RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 GAGE12JA6NER3 117 aa12.87□□□□□ -0.35
SQSTM1-211ENST00000506690 GAGE7O76087 117 aa12.87□□□□□ -0.35
SQSTM1-211ENST00000506690 GAGE12FP0CL80 117 aa12.87□□□□□ -0.35
SQSTM1-211ENST00000506690 GAGE12GP0CL81 117 aa12.87□□□□□ -0.35
SQSTM1-211ENST00000506690 GAGE12IP0CL82 117 aa12.87□□□□□ -0.35
SQSTM1-211ENST00000506690 RPL39P62891 51 aaKnown RBP12.87□□□□□ -0.35
SQSTM1-211ENST00000506690 GAGE4Q13068 117 aa12.87□□□□□ -0.35
SQSTM1-211ENST00000506690 MINOS1Q5TGZ0 78 aa12.87□□□□□ -0.35
SQSTM1-211ENST00000506690 EEF1AKMT3Q96AZ1 226 aa12.87□□□□□ -0.35
SQSTM1-211ENST00000506690 MINOS1-NBL1R4GNA1 71 aa12.87□□□□□ -0.35
SQSTM1-211ENST00000506690 NXPH4O95158 308 aa12.87□□□□□ -0.35
SQSTM1-211ENST00000506690 PRR30Q53SZ7 412 aaPredicted RBP12.87□□□□□ -0.35
SQSTM1-211ENST00000506690 NTN5Q8WTR8 489 aaPredicted RBP12.87□□□□□ -0.35
SQSTM1-211ENST00000506690 CEP295Q9C0D2 2601 aa12.86□□□□□ -0.35
SQSTM1-211ENST00000506690 TRBV7-1A0A0A6YYK4 115 aa12.86□□□□□ -0.35
SQSTM1-211ENST00000506690 LGALS3P17931 250 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-211ENST00000506690 GNRH2O43555 120 aa12.86□□□□□ -0.35
SQSTM1-211ENST00000506690 LY6HO94772 140 aa12.86□□□□□ -0.35
SQSTM1-211ENST00000506690 IFITM1P13164 125 aa12.86□□□□□ -0.35
SQSTM1-211ENST00000506690 FAM19A4Q96LR4 140 aa12.86□□□□□ -0.35
SQSTM1-211ENST00000506690 MUC4Q99102 2169 aa12.85□□□□□ -0.35
SQSTM1-211ENST00000506690 CCDC179H3BU77 68 aa12.85□□□□□ -0.35
SQSTM1-211ENST00000506690 RPL13AP40429 203 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-211ENST00000506690 C1orf122Q6ZSJ8 110 aa12.85□□□□□ -0.35
SQSTM1-211ENST00000506690 ARL3P36405 182 aa12.84□□□□□ -0.35
SQSTM1-211ENST00000506690 TTC32Q5I0X7 151 aa12.84□□□□□ -0.35
SQSTM1-211ENST00000506690 APRG1Q8IVJ8 170 aa12.84□□□□□ -0.35
SQSTM1-211ENST00000506690 OR10J6PQ8NGY7 276 aa12.84□□□□□ -0.35
SQSTM1-211ENST00000506690 ODF3Q96PU9 254 aa12.84□□□□□ -0.35
SQSTM1-211ENST00000506690 ABCA4P78363 2273 aa12.84□□□□□ -0.35
SQSTM1-211ENST00000506690 G3V318 75 aa12.84□□□□□ -0.35
SQSTM1-211ENST00000506690 VCYO14598 125 aa12.84□□□□□ -0.35
SQSTM1-211ENST00000506690 OVOL1O14753 267 aa12.84□□□□□ -0.35
SQSTM1-211ENST00000506690 ELANEP08246 267 aa12.84□□□□□ -0.35
SQSTM1-211ENST00000506690 ATXN8Q156A1 80 aa12.84□□□□□ -0.35
SQSTM1-211ENST00000506690 LINC01620Q4KN68 170 aa12.84□□□□□ -0.35
SQSTM1-211ENST00000506690 LRBAP50851 2863 aa12.84□□□□□ -0.35
SQSTM1-211ENST00000506690 DEFB104AQ8WTQ1 72 aa12.83□□□□□ -0.36
SQSTM1-211ENST00000506690 LEPROTO15243 131 aa12.82□□□□□ -0.36
SQSTM1-211ENST00000506690 RNASE4P34096 147 aaKnown RBP12.82□□□□□ -0.36
SQSTM1-211ENST00000506690 TMEM223A0PJW6 202 aa12.82□□□□□ -0.36
SQSTM1-211ENST00000506690 H7C2G1 150 aa12.82□□□□□ -0.36
SQSTM1-211ENST00000506690 SOCS3O14543 225 aa12.82□□□□□ -0.36
SQSTM1-211ENST00000506690 SUMO4Q6EEV6 95 aa12.82□□□□□ -0.36
SQSTM1-211ENST00000506690 MUSTN1Q8IVN3 82 aa12.82□□□□□ -0.36
SQSTM1-211ENST00000506690 TRBV7-9A0A0J9YWB2 115 aa12.81□□□□□ -0.36
SQSTM1-211ENST00000506690 TEX49A0A1B0GTD5 131 aa12.81□□□□□ -0.36
SQSTM1-211ENST00000506690 DEFB1P60022 68 aa12.81□□□□□ -0.36
SQSTM1-211ENST00000506690 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.81□□□□□ -0.36
SQSTM1-211ENST00000506690 TRAV2A0A0B4J234 112 aa12.81□□□□□ -0.36
SQSTM1-211ENST00000506690 TRBV10-2A0A0K0K1G8 114 aa12.81□□□□□ -0.36
SQSTM1-211ENST00000506690 TRAV8-4A0A0B4J246 113 aa12.8□□□□□ -0.36
SQSTM1-211ENST00000506690 TRBV27A0A0K0K1C4 114 aa12.8□□□□□ -0.36
SQSTM1-211ENST00000506690 LINC01560Q8TB33 94 aa12.8□□□□□ -0.36
SQSTM1-211ENST00000506690 FAM110AQ9BQ89 295 aa12.8□□□□□ -0.36
SQSTM1-211ENST00000506690 SDHAF1A6NFY7 115 aa12.8□□□□□ -0.36
SQSTM1-211ENST00000506690 UCNP55089 124 aa12.8□□□□□ -0.36
SQSTM1-211ENST00000506690 TRBV30A0A0K0K1B3 111 aa12.79□□□□□ -0.36
SQSTM1-211ENST00000506690 C15orf53Q8NAA6 179 aa12.79□□□□□ -0.36
SQSTM1-211ENST00000506690 PTPRQQ9UMZ3 2332 aa12.79□□□□□ -0.36
SQSTM1-211ENST00000506690 SPTBN4Q9H254 2564 aa12.79□□□□□ -0.36
SQSTM1-211ENST00000506690 CACNA1BQ00975 2339 aa12.79□□□□□ -0.36
SQSTM1-211ENST00000506690 A0A0J9YX75 114 aa12.79□□□□□ -0.36
SQSTM1-211ENST00000506690 IGHV1-69P01742 117 aa12.79□□□□□ -0.36
SQSTM1-211ENST00000506690 JPT2Q9H910 190 aa12.79□□□□□ -0.36
SQSTM1-211ENST00000506690 TRBV6-5A0A0K0K1A5 114 aa12.78□□□□□ -0.36
SQSTM1-211ENST00000506690 IGHV4-39P01824 125 aa12.78□□□□□ -0.36
SQSTM1-211ENST00000506690 M0R2P5 195 aa12.78□□□□□ -0.36
SQSTM1-211ENST00000506690 LGALS9O00182 355 aa12.78□□□□□ -0.36
SQSTM1-211ENST00000506690 Q1RN00 199 aa12.78□□□□□ -0.36
SQSTM1-211ENST00000506690 H3BMM0 161 aa12.77□□□□□ -0.37
SQSTM1-211ENST00000506690 UBE2WQ96B02 151 aa12.77□□□□□ -0.37
SQSTM1-211ENST00000506690 SPANXA1Q9NS26 97 aa12.77□□□□□ -0.37
SQSTM1-211ENST00000506690 TRIAP1O43715 76 aa12.77□□□□□ -0.37
SQSTM1-211ENST00000506690 FAM159AQ6UWV7 190 aa12.77□□□□□ -0.37
SQSTM1-211ENST00000506690 SVEP1Q4LDE5 3571 aa12.76□□□□□ -0.37
SQSTM1-211ENST00000506690 F6UB75 175 aa12.76□□□□□ -0.37
SQSTM1-211ENST00000506690 ZNF22P17026 224 aaPredicted RBP12.76□□□□□ -0.37
SQSTM1-211ENST00000506690 CFAP161Q6P656 301 aa12.76□□□□□ -0.37
SQSTM1-211ENST00000506690 OPRPNQ99935 248 aaPredicted RBP12.76□□□□□ -0.37
SQSTM1-211ENST00000506690 SIRPDQ9H106 197 aa12.76□□□□□ -0.37
SQSTM1-211ENST00000506690 A0A087WWL8 130 aa12.76□□□□□ -0.37
SQSTM1-211ENST00000506690 ZFP36P26651 326 aaKnown RBP12.76□□□□□ -0.37
SQSTM1-211ENST00000506690 UNQ9165/PRO28630Q6UXU0 137 aa12.76□□□□□ -0.37
SQSTM1-211ENST00000506690 NSUN5P1Q3KNT7 163 aa12.75□□□□□ -0.37
SQSTM1-211ENST00000506690 A0A0J9YXY3 114 aa12.74□□□□□ -0.37
SQSTM1-211ENST00000506690 F5H697 171 aa12.74□□□□□ -0.37
SQSTM1-211ENST00000506690 MRPL23Q16540 153 aaKnown RBP12.74□□□□□ -0.37
SQSTM1-211ENST00000506690 SHISA2Q6UWI4 295 aa12.74□□□□□ -0.37
SQSTM1-211ENST00000506690 SMIM20Q8N5G0 67 aa12.74□□□□□ -0.37
SQSTM1-211ENST00000506690 BEX4Q9NWD9 120 aaPredicted RBP12.74□□□□□ -0.37
SQSTM1-211ENST00000506690 IGHV3-64A0A075B6Q5 118 aa12.73□□□□□ -0.37
SQSTM1-211ENST00000506690 HERV-K104P63124 156 aa12.73□□□□□ -0.37
SQSTM1-211ENST00000506690 RHOHQ15669 191 aa12.73□□□□□ -0.37
SQSTM1-211ENST00000506690 MDFICQ9P1T7 246 aa12.73□□□□□ -0.37
SQSTM1-211ENST00000506690 ANKHD1Q8IWZ3 2542 aaKnown RBP12.73□□□□□ -0.37
SQSTM1-211ENST00000506690 KLLNB2CW77 178 aa12.73□□□□□ -0.37
SQSTM1-211ENST00000506690 H7C423 109 aa12.73□□□□□ -0.37
SQSTM1-211ENST00000506690 C2orf82Q6UX34 121 aa12.73□□□□□ -0.37
SQSTM1-211ENST00000506690 LITAFQ99732 161 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms