RNA–Protein interactions for RNA: ENST00000497171.1

PHC3-216, Transcript of polyhomeotic homolog 3, humanhuman

TSL 2

Gene PHC3, Length 420 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3-216ENST00000497171 LINC01545Q5VT33 79 aa0.3□□□□□ -2.36
PHC3-216ENST00000497171 SLC48A1Q6P1K1 146 aa0.3□□□□□ -2.36
PHC3-216ENST00000497171 COX7B2Q8TF08 81 aa0.3□□□□□ -2.36
PHC3-216ENST00000497171 COPZ2Q9P299 210 aa0.3□□□□□ -2.36
PHC3-216ENST00000497171 MAP2P11137 1827 aaKnown RBP0.29□□□□□ -2.36
PHC3-216ENST00000497171 KDM6BO15054 1643 aa0.29□□□□□ -2.36
PHC3-216ENST00000497171 TRBV7-1A0A0A6YYK4 115 aa0.29□□□□□ -2.36
PHC3-216ENST00000497171 A6NIN4 97 aa0.29□□□□□ -2.36
PHC3-216ENST00000497171 PIRTP0C851 137 aa0.29□□□□□ -2.36
PHC3-216ENST00000497171 SPANXN1Q5VSR9 72 aa0.29□□□□□ -2.36
PHC3-216ENST00000497171 V9GYV3 84 aa0.29□□□□□ -2.36
PHC3-216ENST00000497171 CACNA1EQ15878 2313 aa0.29□□□□□ -2.36
PHC3-216ENST00000497171 ZNF142P52746 1687 aaPredicted RBP0.28□□□□□ -2.36
PHC3-216ENST00000497171 ABCA1O95477 2261 aa0.28□□□□□ -2.36
PHC3-216ENST00000497171 APODP05090 189 aa0.28□□□□□ -2.36
PHC3-216ENST00000497171 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.28□□□□□ -2.36
PHC3-216ENST00000497171 SMIM11BQ8TCY0 68 aa0.28□□□□□ -2.36
PHC3-216ENST00000497171 TPT1P8Q9HAU6 139 aa0.28□□□□□ -2.36
PHC3-216ENST00000497171 MYH13Q9UKX3 1938 aa0.28□□□□□ -2.36
PHC3-216ENST00000497171 NAV2Q8IVL1 2488 aa0.27□□□□□ -2.37
PHC3-216ENST00000497171 IL5P05113 134 aa0.27□□□□□ -2.37
PHC3-216ENST00000497171 ACYP2P14621 99 aa0.27□□□□□ -2.37
PHC3-216ENST00000497171 ALX1Q15699 326 aa0.27□□□□□ -2.37
PHC3-216ENST00000497171 SMIM21Q3B7S5 101 aa0.27□□□□□ -2.37
PHC3-216ENST00000497171 ANP32BQ92688 251 aaKnown RBP0.27□□□□□ -2.37
PHC3-216ENST00000497171 RPRMQ9NS64 109 aa0.27□□□□□ -2.37
PHC3-216ENST00000497171 TMEM242Q9NWH2 141 aa0.27□□□□□ -2.37
PHC3-216ENST00000497171 SOGA1O94964 1423 aa0.27□□□□□ -2.37
PHC3-216ENST00000497171 VIRMAQ69YN4 1812 aaKnown RBP0.27□□□□□ -2.37
PHC3-216ENST00000497171 A0A087WTM6 91 aa0.26□□□□□ -2.37
PHC3-216ENST00000497171 GVQW2A0A096LPI5 108 aaPredicted RBP0.26□□□□□ -2.37
PHC3-216ENST00000497171 LOC105371267A0A1B0GV96 52 aa0.26□□□□□ -2.37
PHC3-216ENST00000497171 NCR2O95944 276 aa0.26□□□□□ -2.37
PHC3-216ENST00000497171 TSPAN19P0C672 248 aa0.26□□□□□ -2.37
PHC3-216ENST00000497171 RRAS2P62070 204 aaPredicted RBP0.26□□□□□ -2.37
PHC3-216ENST00000497171 UBE2G1P62253 170 aa0.26□□□□□ -2.37
PHC3-216ENST00000497171 COX6A2Q02221 97 aa0.26□□□□□ -2.37
PHC3-216ENST00000497171 SMCO1Q147U7 214 aa0.26□□□□□ -2.37
PHC3-216ENST00000497171 Q6ZUT4 128 aa0.26□□□□□ -2.37
PHC3-216ENST00000497171 CDK13Q14004 1512 aaKnown RBP0.26□□□□□ -2.37
PHC3-216ENST00000497171 ABCA4P78363 2273 aa0.26□□□□□ -2.37
PHC3-216ENST00000497171 CEP152O94986 1710 aa0.25□□□□□ -2.37
PHC3-216ENST00000497171 FHAD1B1AJZ9 1412 aa0.25□□□□□ -2.37
PHC3-216ENST00000497171 NPFFO15130 113 aa0.25□□□□□ -2.37
PHC3-216ENST00000497171 SNCGO76070 127 aa0.25□□□□□ -2.37
PHC3-216ENST00000497171 NMBP08949 121 aa0.25□□□□□ -2.37
PHC3-216ENST00000497171 PIPP12273 146 aaPredicted RBP0.25□□□□□ -2.37
PHC3-216ENST00000497171 COPZ1P61923 177 aa0.25□□□□□ -2.37
PHC3-216ENST00000497171 C9orf116Q5BN46 136 aaPredicted RBP0.25□□□□□ -2.37
PHC3-216ENST00000497171 S100A7L2Q5SY68 101 aa0.25□□□□□ -2.37
PHC3-216ENST00000497171 C10orf82Q8WW14 230 aa0.25□□□□□ -2.37
PHC3-216ENST00000497171 NRXN2Q9P2S2 1712 aa0.24□□□□□ -2.37
PHC3-216ENST00000497171 LAMC3Q9Y6N6 1575 aa0.24□□□□□ -2.37
PHC3-216ENST00000497171 PRG4Q92954 1404 aaPredicted RBP0.24□□□□□ -2.37
PHC3-216ENST00000497171 IFNA17P01571 189 aa0.24□□□□□ -2.37
PHC3-216ENST00000497171 SPTSSBQ8NFR3 76 aa0.24□□□□□ -2.37
PHC3-216ENST00000497171 SPTSSAQ969W0 71 aa0.24□□□□□ -2.37
PHC3-216ENST00000497171 Q96NJ1 140 aa0.24□□□□□ -2.37
PHC3-216ENST00000497171 BDP1A6H8Y1 2624 aa0.24□□□□□ -2.37
PHC3-216ENST00000497171 PHIPQ8WWQ0 1821 aa0.23□□□□□ -2.37
PHC3-216ENST00000497171 TRGV1A0A0A0MS02 117 aa0.23□□□□□ -2.37
PHC3-216ENST00000497171 PITX3O75364 302 aa0.23□□□□□ -2.37
PHC3-216ENST00000497171 SPINK1P00995 79 aa0.23□□□□□ -2.37
PHC3-216ENST00000497171 Q5BKY6 102 aa0.23□□□□□ -2.37
PHC3-216ENST00000497171 SCIMPQ6UWF3 145 aa0.23□□□□□ -2.37
PHC3-216ENST00000497171 KCNRGQ8N5I3 272 aa0.23□□□□□ -2.37
PHC3-216ENST00000497171 FAM213BQ8TBF2 198 aa0.23□□□□□ -2.37
PHC3-216ENST00000497171 MUC22E2RYF6 1773 aaPredicted RBP0.23□□□□□ -2.37
PHC3-216ENST00000497171 GPR98Q8WXG9 6306 aa0.23□□□□□ -2.37
PHC3-216ENST00000497171 FAT4Q6V0I7 4981 aa0.23□□□□□ -2.37
PHC3-216ENST00000497171 MED13LQ71F56 2210 aa0.22□□□□□ -2.37
PHC3-216ENST00000497171 GCHFRP30047 84 aa0.22□□□□□ -2.37
PHC3-216ENST00000497171 GUCA1AP43080 201 aaPredicted RBP0.22□□□□□ -2.37
PHC3-216ENST00000497171 EDDM3BP56851 147 aa0.22□□□□□ -2.37
PHC3-216ENST00000497171 RPS25P62851 125 aaKnown RBP0.22□□□□□ -2.37
PHC3-216ENST00000497171 TCEAL4Q96EI5 215 aa0.22□□□□□ -2.37
PHC3-216ENST00000497171 PFDN5Q99471 154 aa0.22□□□□□ -2.37
PHC3-216ENST00000497171 SCP2D1Q9UJQ7 156 aa0.22□□□□□ -2.37
PHC3-216ENST00000497171 MYH6P13533 1939 aa0.22□□□□□ -2.37
PHC3-216ENST00000497171 PLXNA1Q9UIW2 1896 aa0.22□□□□□ -2.37
PHC3-216ENST00000497171 TMEM2Q9UHN6 1383 aa0.21□□□□□ -2.38
PHC3-216ENST00000497171 UNC13BO14795 1591 aa0.21□□□□□ -2.38
PHC3-216ENST00000497171 FAM92AA1XBS5 289 aa0.21□□□□□ -2.38
PHC3-216ENST00000497171 TMEM14DPA8MWL7 114 aa0.21□□□□□ -2.38
PHC3-216ENST00000497171 Q6ZRX8 168 aa0.21□□□□□ -2.38
PHC3-216ENST00000497171 JMJD1CQ15652 2540 aa0.21□□□□□ -2.38
PHC3-216ENST00000497171 F5P12259 2224 aa0.21□□□□□ -2.38
PHC3-216ENST00000497171 MAST4O15021 2626 aa0.2□□□□□ -2.38
PHC3-216ENST00000497171 PARP14Q460N5 1801 aa0.2□□□□□ -2.38
PHC3-216ENST00000497171 SSC5DA1L4H1 1573 aa0.2□□□□□ -2.38
PHC3-216ENST00000497171 TTC28Q96AY4 2481 aa0.2□□□□□ -2.38
PHC3-216ENST00000497171 NDUFB6O95139 128 aa0.2□□□□□ -2.38
PHC3-216ENST00000497171 SMIM6P0DI80 62 aa0.2□□□□□ -2.38
PHC3-216ENST00000497171 CBLN1P23435 193 aa0.2□□□□□ -2.38
PHC3-216ENST00000497171 UBE2D1P51668 147 aa0.2□□□□□ -2.38
PHC3-216ENST00000497171 SEC11CQ9BY50 192 aa0.2□□□□□ -2.38
PHC3-216ENST00000497171 ARFGEF1Q9Y6D6 1849 aa0.2□□□□□ -2.38
PHC3-216ENST00000497171 IBTKQ9P2D0 1353 aaPredicted RBP0.19□□□□□ -2.38
PHC3-216ENST00000497171 SYNE1Q8NF91 8797 aaKnown RBP0.19□□□□□ -2.38
PHC3-216ENST00000497171 TRAV1-2A0A0B4J238 106 aa0.19□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms