RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ZNF727A8MUV8 499 aa11.21□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 CRYGDP07320 174 aa11.21□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 PEA15Q15121 130 aa11.21□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 LYPD5Q6UWN5 251 aa11.21□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 Q6ZR54 194 aa11.21□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 Q6ZSN1 163 aa11.21□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 RPP21Q9H633 154 aaKnown RBP11.21□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 Q9H8V8 135 aa11.21□□□□□ -0.61
MSH5-SAPCD1-206ENST00000491552 NBDYA0A0U1RRE5 68 aa11.19□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 SSTP61278 116 aa11.19□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 SRSF3P84103 164 aaKnown RBP11.19□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 FAM231DQ6ZW35 169 aa11.19□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 LINC01551Q86U37 167 aa11.19□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 C14orf178Q8N769 122 aaPredicted RBP11.19□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 SMDT1Q9H4I9 107 aa11.19□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 A0A1W2PPQ1 181 aa11.18□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 C9JQL5 133 aa11.18□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 F2Z2F3 143 aa11.18□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 GATCO43716 136 aaKnown RBP11.18□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 RAB14P61106 215 aa11.18□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 CACNG7P62955 275 aa11.18□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 FAM74A3Q4VXF1 159 aa11.18□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 AP1S3Q96PC3 154 aa11.18□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 ERVFC1-1P60608 527 aa11.17□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 ZNF56Q15929 161 aa11.17□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 LYZL1Q6UWQ5 148 aa11.17□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 GAGE12JA6NER3 117 aa11.16□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 SIVA1O15304 175 aa11.16□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 SMIM17P0DL12 118 aa11.16□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 LINC00694P0DN24 101 aa11.16□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 CTRLP40313 264 aa11.16□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 TIRAPP58753 221 aa11.16□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 RAB4BP61018 213 aa11.16□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 GAGE1Q13065 139 aa11.16□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 GAGE4Q13068 117 aa11.16□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 GAGE5Q13069 117 aa11.16□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 GAGE13Q4V321 117 aa11.16□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 TTC32Q5I0X7 151 aa11.16□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 TMEM241Q24JQ0 296 aa11.15□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 ATP6V0E2Q8NHE4 81 aa11.15□□□□□ -0.62
MSH5-SAPCD1-206ENST00000491552 TRBV10-1A0A0K0K1A3 114 aa11.14□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 A8MWL6 223 aa11.14□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 CT83Q5H943 113 aa11.14□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 C1orf134Q5TEV5 83 aa11.14□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 WDR73Q6P4I2 378 aa11.14□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 MSRB1Q9NZV6 116 aa11.14□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 Q9UF83 564 aa11.14□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 NAT8Q9UHE5 227 aa11.14□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 KIF25-AS1Q9Y6Z4 181 aa11.14□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 RTL8CO15255 209 aa11.13□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 TRGC1P0CF51 173 aa11.13□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 RPL23P62829 140 aaKnown RBP11.13□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 IFITM2Q01629 132 aa11.13□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 SOHLH1Q5JUK2 328 aa11.13□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 CLLU1Q5K131 121 aa11.13□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 LINC00336Q6ZUF6 198 aa11.13□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 WFDC10BQ8IUB3 73 aa11.13□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 GTSF1Q8WW33 167 aa11.13□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 CNFNQ9BYD5 112 aa11.13□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 KRTAP1-5Q9BYS1 174 aa11.13□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 GTSF1LQ9H1H1 148 aa11.13□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 OSTCQ9NRP0 149 aa11.13□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 F5H697 171 aa11.12□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 NTF3P20783 257 aa11.12□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 RPL36AP83881 106 aaKnown RBP11.12□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 ADIRFQ15847 76 aa11.12□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 C6orf223Q8N319 242 aa11.12□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 C15orf54Q8N8G6 183 aa11.12□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 RPL36ALQ969Q0 106 aaKnown RBP11.12□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 ISOC2Q96AB3 205 aa11.12□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 MGPP08493 103 aa11.11□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 LINC00315P59091 139 aa11.11□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 LELP1Q5T871 98 aa11.11□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 TRAV8-6A0A0B4J262 113 aa11.1□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 TWIST1Q15672 202 aa11.1□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 OR10J3Q5JRS4 329 aa11.1□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 OR10G8Q8NGN5 311 aa11.1□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 TSKUQ8WUA8 353 aa11.1□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 DPH3P1Q9H4G8 78 aa11.1□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 DNAH10Q8IVF4 4471 aa11.1□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 TRBV7-3A0A075B6L6 115 aa11.09□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 DNAH10OSP0CZ25 163 aa11.09□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 EVI2AP22794 236 aa11.09□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 FOXA3P55318 350 aaPredicted RBP11.09□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 NEXN-AS1Q8NBZ9 246 aa11.09□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 PGLYRP4Q96LB8 373 aa11.09□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 GFRA4Q9GZZ7 299 aa11.09□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 V9GYV3 84 aa11.09□□□□□ -0.63
MSH5-SAPCD1-206ENST00000491552 TRAV9-2A0A087WT02 112 aa11.08□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 IGHV3-38A0A0C4DH36 116 aa11.08□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 PRSS29PA6NIE9 313 aa11.08□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 BTF3P20290 206 aaKnown RBP11.08□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 UBE2D3P61077 147 aa11.08□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 UBE2D2P62837 147 aa11.08□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 BORCS7Q96B45 105 aa11.08□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 A0A087WWC5 75 aa11.07□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 FAM231BA6NCW3 169 aa11.07□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 H7C1H1 209 aa11.07□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 SUMO4Q6EEV6 95 aa11.07□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 DNAH2Q9P225 4427 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 134.8 ms