RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 PSMG4Q5JS54 123 aa9.48□□□□□ -0.89
SHROOM3-208ENST00000486758 RNF5Q99942 180 aa9.48□□□□□ -0.89
SHROOM3-208ENST00000486758 IGF1P05019 195 aa9.48□□□□□ -0.89
SHROOM3-208ENST00000486758 LINC00477Q96M19 166 aa9.48□□□□□ -0.89
SHROOM3-208ENST00000486758 C1QTNF4Q9BXJ3 329 aa9.48□□□□□ -0.89
SHROOM3-208ENST00000486758 IGLV11-55A0A075B6I3 123 aa9.48□□□□□ -0.89
SHROOM3-208ENST00000486758 TRAV12-3A0A0B4J271 114 aa9.48□□□□□ -0.89
SHROOM3-208ENST00000486758 DUSP14O95147 198 aaKnown RBP9.47□□□□□ -0.89
SHROOM3-208ENST00000486758 FLNCQ14315 2725 aa9.47□□□□□ -0.89
SHROOM3-208ENST00000486758 OVOL3O00110 214 aa9.47□□□□□ -0.89
SHROOM3-208ENST00000486758 GNRH2O43555 120 aa9.47□□□□□ -0.89
SHROOM3-208ENST00000486758 LGALS1P09382 135 aaKnown RBP9.47□□□□□ -0.89
SHROOM3-208ENST00000486758 CD7P09564 240 aa9.47□□□□□ -0.89
SHROOM3-208ENST00000486758 FAM159AQ6UWV7 190 aa9.47□□□□□ -0.89
SHROOM3-208ENST00000486758 C8orf31Q8N9H6 132 aa9.47□□□□□ -0.89
SHROOM3-208ENST00000486758 PIMREGQ9BSJ6 248 aa9.47□□□□□ -0.89
SHROOM3-208ENST00000486758 TM2D2Q9BX73 214 aa9.47□□□□□ -0.89
SHROOM3-208ENST00000486758 PRRC2AP48634 2157 aaKnown RBP9.47□□□□□ -0.89
SHROOM3-208ENST00000486758 RPL39P62891 51 aaKnown RBP9.47□□□□□ -0.89
SHROOM3-208ENST00000486758 PPDPFLQ8WWR9 84 aa9.47□□□□□ -0.89
SHROOM3-208ENST00000486758 SLC50A1Q9BRV3 221 aa9.47□□□□□ -0.89
SHROOM3-208ENST00000486758 IGHV3-73A0A0B4J1V6 119 aa9.46□□□□□ -0.89
SHROOM3-208ENST00000486758 ZNF688P0C7X2 276 aa9.46□□□□□ -0.89
SHROOM3-208ENST00000486758 IGLC6P0CF74 106 aa9.46□□□□□ -0.89
SHROOM3-208ENST00000486758 SCGB1A1P11684 91 aa9.46□□□□□ -0.89
SHROOM3-208ENST00000486758 SMIM20Q8N5G0 67 aa9.46□□□□□ -0.89
SHROOM3-208ENST00000486758 OR11H6Q8NGC7 330 aa9.46□□□□□ -0.89
SHROOM3-208ENST00000486758 IGHV3OR16-12A0A075B7B8 117 aa9.46□□□□□ -0.9
SHROOM3-208ENST00000486758 BLCAPP62952 87 aa9.46□□□□□ -0.9
SHROOM3-208ENST00000486758 Q8N9W7 124 aa9.46□□□□□ -0.9
SHROOM3-208ENST00000486758 C11orf21Q9P2W6 132 aa9.46□□□□□ -0.9
SHROOM3-208ENST00000486758 A0A1W2PPR1 153 aa9.45□□□□□ -0.9
SHROOM3-208ENST00000486758 CRYGBP07316 175 aa9.45□□□□□ -0.9
SHROOM3-208ENST00000486758 XGP55808 180 aa9.45□□□□□ -0.9
SHROOM3-208ENST00000486758 MRGPRG-AS1Q2M3A8 158 aa9.45□□□□□ -0.9
SHROOM3-208ENST00000486758 ERG28Q9UKR5 140 aa9.45□□□□□ -0.9
SHROOM3-208ENST00000486758 TRBV12-3P01733 135 aa9.45□□□□□ -0.9
SHROOM3-208ENST00000486758 ID1P41134 155 aa9.45□□□□□ -0.9
SHROOM3-208ENST00000486758 TRPT1Q86TN4 253 aaKnown RBP9.45□□□□□ -0.9
SHROOM3-208ENST00000486758 NTN5Q8WTR8 489 aaPredicted RBP9.45□□□□□ -0.9
SHROOM3-208ENST00000486758 DPH3P1Q9H4G8 78 aa9.45□□□□□ -0.9
SHROOM3-208ENST00000486758 U3KQK5 164 aa9.45□□□□□ -0.9
SHROOM3-208ENST00000486758 TRBV7-9A0A0J9YWB2 115 aa9.45□□□□□ -0.9
SHROOM3-208ENST00000486758 ANKRD29Q8N6D5 301 aa9.45□□□□□ -0.9
SHROOM3-208ENST00000486758 C19orf84I3L1E1 186 aa9.44□□□□□ -0.9
SHROOM3-208ENST00000486758 RNASE13Q5GAN3 156 aaKnown RBP9.44□□□□□ -0.9
SHROOM3-208ENST00000486758 MINOS1Q5TGZ0 78 aa9.44□□□□□ -0.9
SHROOM3-208ENST00000486758 Q6ZUT4 128 aa9.44□□□□□ -0.9
SHROOM3-208ENST00000486758 MINOS1-NBL1R4GNA1 71 aa9.44□□□□□ -0.9
SHROOM3-208ENST00000486758 TSPAN13O95857 204 aa9.44□□□□□ -0.9
SHROOM3-208ENST00000486758 UBE2E1P51965 193 aa9.44□□□□□ -0.9
SHROOM3-208ENST00000486758 JPT2Q9H910 190 aa9.44□□□□□ -0.9
SHROOM3-208ENST00000486758 SMAD5-AS1Q9Y6J3 95 aa9.44□□□□□ -0.9
SHROOM3-208ENST00000486758 TRAV21A0A0B4J279 112 aa9.44□□□□□ -0.9
SHROOM3-208ENST00000486758 SLC25A20O43772 301 aa9.44□□□□□ -0.9
SHROOM3-208ENST00000486758 IGHV4-38-2P0DP08 117 aa9.44□□□□□ -0.9
SHROOM3-208ENST00000486758 SPXQ9BT56 116 aa9.44□□□□□ -0.9
SHROOM3-208ENST00000486758 TCL1BO95988 128 aa9.43□□□□□ -0.9
SHROOM3-208ENST00000486758 RPL13AP40429 203 aaKnown RBP9.43□□□□□ -0.9
SHROOM3-208ENST00000486758 HIST2H2BDQ6DRA6 164 aa9.43□□□□□ -0.9
SHROOM3-208ENST00000486758 OPRPNQ99935 248 aaPredicted RBP9.43□□□□□ -0.9
SHROOM3-208ENST00000486758 TNFRSF13BO14836 293 aaPredicted RBP9.43□□□□□ -0.9
SHROOM3-208ENST00000486758 GATA3P23771 443 aa9.43□□□□□ -0.9
SHROOM3-208ENST00000486758 TAL2Q16559 108 aa9.43□□□□□ -0.9
SHROOM3-208ENST00000486758 ITPR1Q14643 2758 aa9.43□□□□□ -0.9
SHROOM3-208ENST00000486758 IGHV4-61A0A0C4DH41 118 aa9.43□□□□□ -0.9
SHROOM3-208ENST00000486758 C11orf86A6NJI1 115 aa9.43□□□□□ -0.9
SHROOM3-208ENST00000486758 MOB4Q9Y3A3 225 aa9.43□□□□□ -0.9
SHROOM3-208ENST00000486758 ZANQ9Y493 2812 aa9.43□□□□□ -0.9
SHROOM3-208ENST00000486758 BAALCQ8WXS3 180 aa9.42□□□□□ -0.9
SHROOM3-208ENST00000486758 TRAV12-2A0A075B6T6 113 aa9.42□□□□□ -0.9
SHROOM3-208ENST00000486758 FAM110DQ8TAY7 271 aaPredicted RBP9.42□□□□□ -0.9
SHROOM3-208ENST00000486758 RHPN1-AS1Q9BWJ2 59 aa9.42□□□□□ -0.9
SHROOM3-208ENST00000486758 PRO1854Q9UHT4 67 aa9.42□□□□□ -0.9
SHROOM3-208ENST00000486758 BUB3O43684 328 aa9.41□□□□□ -0.9
SHROOM3-208ENST00000486758 UNQ9165/PRO28630Q6UXU0 137 aa9.41□□□□□ -0.9
SHROOM3-208ENST00000486758 NFE4Q86UQ8 179 aa9.41□□□□□ -0.9
SHROOM3-208ENST00000486758 TEN1Q86WV5 123 aa9.41□□□□□ -0.9
SHROOM3-208ENST00000486758 TRAV8-4A0A0B4J246 113 aa9.41□□□□□ -0.9
SHROOM3-208ENST00000486758 CENPVL3A0A0U1RRI6 287 aa9.41□□□□□ -0.9
SHROOM3-208ENST00000486758 LINC01559Q495D7 138 aa9.41□□□□□ -0.9
SHROOM3-208ENST00000486758 PHLDA1Q8WV24 401 aaPredicted RBP9.41□□□□□ -0.9
SHROOM3-208ENST00000486758 A4D1N5 150 aa9.41□□□□□ -0.9
SHROOM3-208ENST00000486758 NPBQ8NG41 125 aa9.41□□□□□ -0.9
SHROOM3-208ENST00000486758 TRBV6-1A0A0K0K1D8 114 aa9.4□□□□□ -0.9
SHROOM3-208ENST00000486758 LY6LH3BQJ8 138 aa9.4□□□□□ -0.9
SHROOM3-208ENST00000486758 SPATA25Q9BR10 227 aa9.4□□□□□ -0.9
SHROOM3-208ENST00000486758 TMEM262E9PQX1 116 aa9.4□□□□□ -0.9
SHROOM3-208ENST00000486758 ZNF625Q96I27 306 aaPredicted RBP9.4□□□□□ -0.9
SHROOM3-208ENST00000486758 SDHAF1A6NFY7 115 aa9.4□□□□□ -0.91
SHROOM3-208ENST00000486758 MRPS12O15235 138 aaKnown RBP9.4□□□□□ -0.91
SHROOM3-208ENST00000486758 COX6CP09669 75 aa9.4□□□□□ -0.91
SHROOM3-208ENST00000486758 DGAT2L7PQ6IED9 249 aa9.4□□□□□ -0.91
SHROOM3-208ENST00000486758 Q6ZS46 218 aa9.4□□□□□ -0.91
SHROOM3-208ENST00000486758 VCX2Q9H322 139 aa9.4□□□□□ -0.91
SHROOM3-208ENST00000486758 MORN3Q6PF18 240 aaPredicted RBP9.39□□□□□ -0.91
SHROOM3-208ENST00000486758 C2orf82Q6UX34 121 aa9.39□□□□□ -0.91
SHROOM3-208ENST00000486758 A0A1W2PRX2 142 aa9.39□□□□□ -0.91
SHROOM3-208ENST00000486758 J3QQQ9 107 aa9.39□□□□□ -0.91
SHROOM3-208ENST00000486758 AKAP9Q99996 3911 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms