RNA–Protein interactions for RNA: ENST00000481173.1

CCNL1-223, Transcript of cyclin L1, human

TSL 2

Gene CCNL1, Length 571 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCNL1-223	ENST00000481173	AGPAT4-IT1	Q9H0P7	198 aa		0.36	□□□□□ -2.35
CCNL1-223	ENST00000481173	C10orf95	Q9H7T3	257 aa		0.36	□□□□□ -2.35
CCNL1-223	ENST00000481173	SERP1	Q9Y6X1	66 aa		0.36	□□□□□ -2.35
CCNL1-223	ENST00000481173		E9PCH4	1651 aa		0.36	□□□□□ -2.35
CCNL1-223	ENST00000481173	SYNJ1	O43426	1573 aa		0.36	□□□□□ -2.35
CCNL1-223	ENST00000481173	GRIN2A	Q12879	1464 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	ZNF518A	Q6AHZ1	1483 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	NUP210	Q8TEM1	1887 aa	Predicted RBP	0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	SCN3A	Q9NY46	2000 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	CPD	O75976	1380 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	KTN1	Q86UP2	1357 aa	Known RBP	0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	N4BP2	Q86UW6	1770 aa	Predicted RBP	0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	MYLK	Q15746	1914 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	CNTRL	Q7Z7A1	2325 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	MYOF	Q9NZM1	2061 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173		A0A096LNT2	108 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	LY6G6C	O95867	125 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	TFF1	P04155	84 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	ACYP2	P14621	99 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	GCHFR	P30047	84 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	S100A3	P33764	101 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	EDDM3B	P56851	147 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	WHAMMP3	Q1A5X7	153 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	S100A7L2	Q5SY68	101 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	TMEM203	Q969S6	136 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173		R4GMQ9	66 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	TNRC6B	Q9UPQ9	1833 aa	Known RBP	0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	CEP152	O94986	1710 aa		0.35	□□□□□ -2.35
CCNL1-223	ENST00000481173	USP54	Q70EL1	1684 aa		0.34	□□□□□ -2.35
CCNL1-223	ENST00000481173	EML6	Q6ZMW3	1958 aa		0.34	□□□□□ -2.35
CCNL1-223	ENST00000481173	EXPH5	Q8NEV8	1989 aa		0.34	□□□□□ -2.35
CCNL1-223	ENST00000481173	TRAV13-2	A0A0B4J235	113 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173		A0A0D9SG42	100 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	FAM24A	A6NFZ4	105 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	TMEM14DP	A8MWL7	114 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	MIF4GD	A9UHW6	222 aa	Known RBP	0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	PIN1P1	O15428	100 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	SSSCA1	O60232	199 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	SNAPC5	O75971	98 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	SIX6	O95475	246 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	UBE2D1	P51668	147 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	TPPP2	P59282	170 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	NPC2	P61916	151 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	C10orf128	Q5T292	105 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173		Q6AWC8	147 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	VMO1	Q7Z5L0	202 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	SMG6	Q86US8	1419 aa	Known RBP	0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	MYOZ3	Q8TDC0	251 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	SMIM4	Q8WVI0	70 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	PP6455	Q8WZ26	134 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	CYP4F30P	Q9H0H9	118 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	PLAC8	Q9NZF1	115 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	APC	P25054	2843 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	KDM6B	O15054	1643 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	CFTR	P13569	1480 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	IFT140	Q96RY7	1462 aa		0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	SNRNP200	O75643	2136 aa	Known RBP	0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	HEATR1	Q9H583	2144 aa	Known RBP	0.34	□□□□□ -2.36
CCNL1-223	ENST00000481173	CDK13	Q14004	1512 aa	Known RBP	0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	ROCK2	O75116	1388 aa	Known RBP	0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	NUP210L	Q5VU65	1888 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	MYH7B	A7E2Y1	1941 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	MYH2	Q9UKX2	1941 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	MYOM3	Q5VTT5	1437 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	KIDINS220	Q9ULH0	1771 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	SPAAR	A0A1B0GVQ0	90 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	LOC285095	A0A1B0GVY8	99 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	HCG22	E2RYF7	251 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	PITX3	O75364	302 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	PPP1R17	O96001	155 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	TNF	P01375	233 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	GNG4	P50150	75 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	RBM3	P98179	157 aa	Known RBP	0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	COX6A2	Q02221	97 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	INSL4	Q14641	139 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173		Q5VV11	94 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	MRPL54	Q6P161	138 aa	Known RBP	0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	BAGE3	Q86Y29	109 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	SVBP	Q8N300	66 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	TTC9C	Q8N5M4	171 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	C10orf82	Q8WW14	230 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	PROK2	Q9HC23	129 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	NPVF	Q9HCQ7	196 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	GNG8	Q9UK08	70 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	LINC00312	Q9Y6C7	94 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	WDR97	A6NE52	1622 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	WDR7	Q9Y4E6	1490 aa		0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	NCOA6	Q14686	2063 aa	Predicted RBP	0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	MYO18A	Q92614	2054 aa	Known RBP	0.33	□□□□□ -2.36
CCNL1-223	ENST00000481173	MYH3	P11055	1940 aa		0.32	□□□□□ -2.36
CCNL1-223	ENST00000481173	CEP192	Q8TEP8	1941 aa		0.32	□□□□□ -2.36
CCNL1-223	ENST00000481173	TET1	Q8NFU7	2136 aa		0.32	□□□□□ -2.36
CCNL1-223	ENST00000481173	MUC4	Q99102	2169 aa		0.32	□□□□□ -2.36
CCNL1-223	ENST00000481173	LRP5	O75197	1615 aa		0.32	□□□□□ -2.36
CCNL1-223	ENST00000481173	SI	P14410	1827 aa		0.32	□□□□□ -2.36
CCNL1-223	ENST00000481173	TRGV1	A0A0A0MS02	117 aa		0.32	□□□□□ -2.36
CCNL1-223	ENST00000481173		A0A0D9SFI3	127 aa		0.32	□□□□□ -2.36
CCNL1-223	ENST00000481173	DLEU1	O43261	78 aa		0.32	□□□□□ -2.36
CCNL1-223	ENST00000481173	APOC3	P02656	99 aa		0.32	□□□□□ -2.36

Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms