RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 COX7A2LO14548 114 aa10.46□□□□□ -0.73
COL6A3-209ENST00000472056 PINLYPA6NC86 204 aa10.46□□□□□ -0.73
COL6A3-209ENST00000472056 ODF1Q14990 250 aa10.46□□□□□ -0.73
COL6A3-209ENST00000472056 IGFL3Q6UXB1 125 aa10.46□□□□□ -0.74
COL6A3-209ENST00000472056 A0A0J9YXY3 114 aa10.46□□□□□ -0.74
COL6A3-209ENST00000472056 IGKV1-39P01597 117 aa10.46□□□□□ -0.74
COL6A3-209ENST00000472056 IGKV1D-39P04432 117 aa10.46□□□□□ -0.74
COL6A3-209ENST00000472056 IGLV3-9A0A075B6K5 115 aa10.45□□□□□ -0.74
COL6A3-209ENST00000472056 BUB3O43684 328 aa10.45□□□□□ -0.74
COL6A3-209ENST00000472056 C9orf47Q6ZRZ4 202 aa10.45□□□□□ -0.74
COL6A3-209ENST00000472056 C3orf22Q8N5N4 141 aa10.45□□□□□ -0.74
COL6A3-209ENST00000472056 DKK4Q9UBT3 224 aa10.45□□□□□ -0.74
COL6A3-209ENST00000472056 RS1O15537 224 aa10.45□□□□□ -0.74
COL6A3-209ENST00000472056 WFDC2Q14508 124 aa10.45□□□□□ -0.74
COL6A3-209ENST00000472056 NDUFA11Q86Y39 141 aa10.45□□□□□ -0.74
COL6A3-209ENST00000472056 TMEM61Q8N0U2 210 aa10.45□□□□□ -0.74
COL6A3-209ENST00000472056 NXPH4O95158 308 aa10.45□□□□□ -0.74
COL6A3-209ENST00000472056 TRBV12-3P01733 135 aa10.45□□□□□ -0.74
COL6A3-209ENST00000472056 CRIPAKQ8N1N5 446 aa10.45□□□□□ -0.74
COL6A3-209ENST00000472056 DEFB104AQ8WTQ1 72 aa10.44□□□□□ -0.74
COL6A3-209ENST00000472056 NPBQ8NG41 125 aa10.44□□□□□ -0.74
COL6A3-209ENST00000472056 GP9P14770 177 aa10.44□□□□□ -0.74
COL6A3-209ENST00000472056 FXYD2P54710 66 aa10.44□□□□□ -0.74
COL6A3-209ENST00000472056 CASC2Q6XLA1 102 aa10.44□□□□□ -0.74
COL6A3-209ENST00000472056 TM2D2Q9BX73 214 aa10.44□□□□□ -0.74
COL6A3-209ENST00000472056 IGKV3D-7A0A0C4DH55 119 aa10.44□□□□□ -0.74
COL6A3-209ENST00000472056 DEFB121Q5J5C9 76 aa10.44□□□□□ -0.74
COL6A3-209ENST00000472056 TLN2Q9Y4G6 2542 aa10.44□□□□□ -0.74
COL6A3-209ENST00000472056 XCL2Q9UBD3 114 aa10.44□□□□□ -0.74
COL6A3-209ENST00000472056 NOTCH2Q04721 2471 aa10.43□□□□□ -0.74
COL6A3-209ENST00000472056 LTBP2Q14767 1821 aa10.43□□□□□ -0.74
COL6A3-209ENST00000472056 FAM236DA0A1B0GTK5 79 aa10.43□□□□□ -0.74
COL6A3-209ENST00000472056 K7EQD1 137 aa10.43□□□□□ -0.74
COL6A3-209ENST00000472056 P0DMU3 169 aa10.43□□□□□ -0.74
COL6A3-209ENST00000472056 FAM231AP0DMU4 169 aa10.43□□□□□ -0.74
COL6A3-209ENST00000472056 FAM231CP0DMU5 169 aa10.43□□□□□ -0.74
COL6A3-209ENST00000472056 FAM236CP0DP71 79 aa10.43□□□□□ -0.74
COL6A3-209ENST00000472056 H7C423 109 aa10.43□□□□□ -0.74
COL6A3-209ENST00000472056 VWCEQ96DN2 955 aa10.43□□□□□ -0.74
COL6A3-209ENST00000472056 MDFICQ9P1T7 246 aa10.43□□□□□ -0.74
COL6A3-209ENST00000472056 MIAQ16674 131 aa10.43□□□□□ -0.74
COL6A3-209ENST00000472056 TFF1P04155 84 aa10.42□□□□□ -0.74
COL6A3-209ENST00000472056 KLK9Q9UKQ9 250 aa10.42□□□□□ -0.74
COL6A3-209ENST00000472056 ZNF503Q96F45 646 aa10.42□□□□□ -0.74
COL6A3-209ENST00000472056 TLN1Q9Y490 2541 aaKnown RBP10.42□□□□□ -0.74
COL6A3-209ENST00000472056 HIST2H2BCQ6DN03 193 aa10.42□□□□□ -0.74
COL6A3-209ENST00000472056 LYNX1G3V0Z9 82 aa10.41□□□□□ -0.74
COL6A3-209ENST00000472056 LYNX1P0DP58 116 aa10.41□□□□□ -0.74
COL6A3-209ENST00000472056 TRBV10-1A0A0K0K1A3 114 aa10.41□□□□□ -0.74
COL6A3-209ENST00000472056 IGKV4-1P06312 121 aa10.41□□□□□ -0.74
COL6A3-209ENST00000472056 MLANAQ16655 118 aa10.41□□□□□ -0.74
COL6A3-209ENST00000472056 HIST2H2BDQ6DRA6 164 aa10.41□□□□□ -0.74
COL6A3-209ENST00000472056 TRAV4A0A0B4J268 109 aa10.41□□□□□ -0.74
COL6A3-209ENST00000472056 GTSF1Q8WW33 167 aa10.41□□□□□ -0.74
COL6A3-209ENST00000472056 E7EQL1 145 aa10.41□□□□□ -0.74
COL6A3-209ENST00000472056 USP17L23D6RBM5 183 aa10.41□□□□□ -0.74
COL6A3-209ENST00000472056 XCL1P47992 114 aa10.41□□□□□ -0.74
COL6A3-209ENST00000472056 Q6ZSR3 168 aa10.41□□□□□ -0.74
COL6A3-209ENST00000472056 DIRC1Q969H9 104 aa10.41□□□□□ -0.74
COL6A3-209ENST00000472056 UPK3BQ9BT76 320 aa10.41□□□□□ -0.74
COL6A3-209ENST00000472056 LYPD2Q6UXB3 125 aa10.4□□□□□ -0.74
COL6A3-209ENST00000472056 FGF23Q9GZV9 251 aaPredicted RBP10.4□□□□□ -0.74
COL6A3-209ENST00000472056 ACANP16112 2415 aa10.4□□□□□ -0.74
COL6A3-209ENST00000472056 BPESC1Q9GZL8 116 aa10.4□□□□□ -0.74
COL6A3-209ENST00000472056 ANKRD39Q53RE8 183 aa10.4□□□□□ -0.74
COL6A3-209ENST00000472056 TMEM89A2RUT3 159 aa10.4□□□□□ -0.74
COL6A3-209ENST00000472056 NDUFA1O15239 70 aa10.4□□□□□ -0.74
COL6A3-209ENST00000472056 FN1P02751 2386 aaKnown RBP10.39□□□□□ -0.75
COL6A3-209ENST00000472056 NDUFA7O95182 113 aa10.39□□□□□ -0.75
COL6A3-209ENST00000472056 MPLKIPQ8TAP9 179 aa10.39□□□□□ -0.75
COL6A3-209ENST00000472056 LOXP28300 417 aaPredicted RBP10.39□□□□□ -0.75
COL6A3-209ENST00000472056 IGFL4Q6B9Z1 124 aa10.39□□□□□ -0.75
COL6A3-209ENST00000472056 KIR2DL5BQ8NHK3 375 aa10.39□□□□□ -0.75
COL6A3-209ENST00000472056 ODF3Q96PU9 254 aa10.39□□□□□ -0.75
COL6A3-209ENST00000472056 ZMAT4Q9H898 229 aa10.39□□□□□ -0.75
COL6A3-209ENST00000472056 IGHV4-28A0A0C4DH34 117 aa10.38□□□□□ -0.75
COL6A3-209ENST00000472056 AGPAT4-IT1Q9H0P7 198 aa10.38□□□□□ -0.75
COL6A3-209ENST00000472056 PRB2P02812 416 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-209ENST00000472056 PRB1P04280 392 aa10.38□□□□□ -0.75
COL6A3-209ENST00000472056 C16orf54Q6UWD8 224 aa10.38□□□□□ -0.75
COL6A3-209ENST00000472056 WFDC11Q8NEX6 87 aa10.38□□□□□ -0.75
COL6A3-209ENST00000472056 EPOPA6NHQ4 379 aa10.38□□□□□ -0.75
COL6A3-209ENST00000472056 TEX22C9J3V5 150 aa10.38□□□□□ -0.75
COL6A3-209ENST00000472056 IGHV3-16A0A0C4DH30 117 aa10.38□□□□□ -0.75
COL6A3-209ENST00000472056 RPL18AQ02543 176 aaKnown RBP10.38□□□□□ -0.75
COL6A3-209ENST00000472056 Q0VFX4 171 aa10.38□□□□□ -0.75
COL6A3-209ENST00000472056 K7EMT4 169 aa10.37□□□□□ -0.75
COL6A3-209ENST00000472056 BRD3OSQ6XYD6 125 aa10.37□□□□□ -0.75
COL6A3-209ENST00000472056 TDRG1Q3Y452 100 aa10.37□□□□□ -0.75
COL6A3-209ENST00000472056 FAM167A-AS1Q96KT0 104 aa10.37□□□□□ -0.75
COL6A3-209ENST00000472056 ZNF581Q9P0T4 197 aa10.36□□□□□ -0.75
COL6A3-209ENST00000472056 A6NED7 52 aa10.36□□□□□ -0.75
COL6A3-209ENST00000472056 MUC7Q8TAX7 377 aa10.36□□□□□ -0.75
COL6A3-209ENST00000472056 VPREB3Q9UKI3 123 aa10.36□□□□□ -0.75
COL6A3-209ENST00000472056 LINC00205P59089 165 aa10.36□□□□□ -0.75
COL6A3-209ENST00000472056 A0A0U1RQV1 116 aa10.36□□□□□ -0.75
COL6A3-209ENST00000472056 KRTAP27-1Q3LI81 207 aa10.36□□□□□ -0.75
COL6A3-209ENST00000472056 Q6Q795 121 aa10.36□□□□□ -0.75
COL6A3-209ENST00000472056 RNF144BQ7Z419 303 aa10.36□□□□□ -0.75
COL6A3-209ENST00000472056 SERP2Q8N6R1 65 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms