RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 CEBPGP53567 150 aa13.78□□□□□ -0.2
NPHP4-206ENST00000468253 SPANXN1Q5VSR9 72 aa13.78□□□□□ -0.2
NPHP4-206ENST00000468253 FAM231DQ6ZW35 169 aa13.78□□□□□ -0.2
NPHP4-206ENST00000468253 FER1L6-AS1Q8NA97 138 aa13.78□□□□□ -0.2
NPHP4-206ENST00000468253 IGLV2-18A0A075B6J9 118 aa13.77□□□□□ -0.21
NPHP4-206ENST00000468253 ZNF727A8MUV8 499 aa13.77□□□□□ -0.21
NPHP4-206ENST00000468253 CACNG7P62955 275 aa13.77□□□□□ -0.21
NPHP4-206ENST00000468253 LOC100131303A0A0U1RQF7 123 aa13.76□□□□□ -0.21
NPHP4-206ENST00000468253 NBDYA0A0U1RRE5 68 aa13.76□□□□□ -0.21
NPHP4-206ENST00000468253 M0R2N4 97 aa13.76□□□□□ -0.21
NPHP4-206ENST00000468253 GZMBP10144 247 aa13.76□□□□□ -0.21
NPHP4-206ENST00000468253 RAB14P61106 215 aa13.76□□□□□ -0.21
NPHP4-206ENST00000468253 RNASE7Q9H1E1 156 aaKnown RBP13.76□□□□□ -0.21
NPHP4-206ENST00000468253 RPP21Q9H633 154 aaKnown RBP13.76□□□□□ -0.21
NPHP4-206ENST00000468253 A0A087WWL8 130 aa13.75□□□□□ -0.21
NPHP4-206ENST00000468253 BTF3P20290 206 aaKnown RBP13.74□□□□□ -0.21
NPHP4-206ENST00000468253 RAB4BP61018 213 aa13.74□□□□□ -0.21
NPHP4-206ENST00000468253 TMEM241Q24JQ0 296 aa13.74□□□□□ -0.21
NPHP4-206ENST00000468253 FAM74A4Q5TZK3 123 aa13.74□□□□□ -0.21
NPHP4-206ENST00000468253 LINC01551Q86U37 167 aa13.74□□□□□ -0.21
NPHP4-206ENST00000468253 DNAH2Q9P225 4427 aa13.74□□□□□ -0.21
NPHP4-206ENST00000468253 TRBV10-1A0A0K0K1A3 114 aa13.73□□□□□ -0.21
NPHP4-206ENST00000468253 C9JQL5 133 aa13.73□□□□□ -0.21
NPHP4-206ENST00000468253 GATCO43716 136 aaKnown RBP13.73□□□□□ -0.21
NPHP4-206ENST00000468253 CT83Q5H943 113 aa13.73□□□□□ -0.21
NPHP4-206ENST00000468253 TTC32Q5I0X7 151 aa13.73□□□□□ -0.21
NPHP4-206ENST00000468253 LYZL1Q6UWQ5 148 aa13.73□□□□□ -0.21
NPHP4-206ENST00000468253 C14orf178Q8N769 122 aaPredicted RBP13.73□□□□□ -0.21
NPHP4-206ENST00000468253 CNFNQ9BYD5 112 aa13.73□□□□□ -0.21
NPHP4-206ENST00000468253 MUC21A0A0G2JKD1 596 aa13.72□□□□□ -0.21
NPHP4-206ENST00000468253 MUC21A0A140T8X8 626 aa13.72□□□□□ -0.21
NPHP4-206ENST00000468253 A8MWL6 223 aa13.72□□□□□ -0.21
NPHP4-206ENST00000468253 K7EP13 123 aa13.72□□□□□ -0.21
NPHP4-206ENST00000468253 SIVA1O15304 175 aa13.72□□□□□ -0.21
NPHP4-206ENST00000468253 FOXA3P55318 350 aaPredicted RBP13.72□□□□□ -0.21
NPHP4-206ENST00000468253 ERVFC1-1P60608 527 aa13.72□□□□□ -0.21
NPHP4-206ENST00000468253 SRSF3P84103 164 aaKnown RBP13.72□□□□□ -0.21
NPHP4-206ENST00000468253 LINC00336Q6ZUF6 198 aa13.72□□□□□ -0.21
NPHP4-206ENST00000468253 ATP6V0E2Q8NHE4 81 aa13.72□□□□□ -0.21
NPHP4-206ENST00000468253 TPPP3Q9BW30 176 aa13.72□□□□□ -0.21
NPHP4-206ENST00000468253 OSTCQ9NRP0 149 aa13.72□□□□□ -0.21
NPHP4-206ENST00000468253 KIF25-AS1Q9Y6Z4 181 aa13.72□□□□□ -0.21
NPHP4-206ENST00000468253 DNAH17Q9UFH2 4485 aa13.72□□□□□ -0.21
NPHP4-206ENST00000468253 LINC00694P0DN24 101 aa13.71□□□□□ -0.21
NPHP4-206ENST00000468253 SOHLH1Q5JUK2 328 aa13.71□□□□□ -0.21
NPHP4-206ENST00000468253 GTSF1LQ9H1H1 148 aa13.71□□□□□ -0.21
NPHP4-206ENST00000468253 SMIM17P0DL12 118 aa13.7□□□□□ -0.22
NPHP4-206ENST00000468253 CTRLP40313 264 aa13.7□□□□□ -0.22
NPHP4-206ENST00000468253 LINC00315P59091 139 aa13.7□□□□□ -0.22
NPHP4-206ENST00000468253 C1orf134Q5TEV5 83 aa13.7□□□□□ -0.22
NPHP4-206ENST00000468253 AP1S3Q96PC3 154 aa13.7□□□□□ -0.22
NPHP4-206ENST00000468253 FAM231BA6NCW3 169 aa13.69□□□□□ -0.22
NPHP4-206ENST00000468253 NTF3P20783 257 aa13.69□□□□□ -0.22
NPHP4-206ENST00000468253 SSTP61278 116 aa13.69□□□□□ -0.22
NPHP4-206ENST00000468253 CLLU1Q5K131 121 aa13.69□□□□□ -0.22
NPHP4-206ENST00000468253 OR10G8Q8NGN5 311 aa13.69□□□□□ -0.22
NPHP4-206ENST00000468253 Q9UF83 564 aa13.69□□□□□ -0.22
NPHP4-206ENST00000468253 NAT8Q9UHE5 227 aa13.69□□□□□ -0.22
NPHP4-206ENST00000468253 TRAV9-2A0A087WT02 112 aa13.68□□□□□ -0.22
NPHP4-206ENST00000468253 GAGE12JA6NER3 117 aa13.68□□□□□ -0.22
NPHP4-206ENST00000468253 RTL8CO15255 209 aa13.68□□□□□ -0.22
NPHP4-206ENST00000468253 TRGC1P0CF51 173 aa13.68□□□□□ -0.22
NPHP4-206ENST00000468253 GAGE1Q13065 139 aa13.68□□□□□ -0.22
NPHP4-206ENST00000468253 GAGE4Q13068 117 aa13.68□□□□□ -0.22
NPHP4-206ENST00000468253 GAGE5Q13069 117 aa13.68□□□□□ -0.22
NPHP4-206ENST00000468253 GAGE13Q4V321 117 aa13.68□□□□□ -0.22
NPHP4-206ENST00000468253 LELP1Q5T871 98 aa13.68□□□□□ -0.22
NPHP4-206ENST00000468253 GTSF1Q8WW33 167 aa13.68□□□□□ -0.22
NPHP4-206ENST00000468253 GFRA4Q9GZZ7 299 aa13.68□□□□□ -0.22
NPHP4-206ENST00000468253 MSRB1Q9NZV6 116 aa13.68□□□□□ -0.22
NPHP4-206ENST00000468253 RPL36AP83881 106 aaKnown RBP13.67□□□□□ -0.22
NPHP4-206ENST00000468253 RPL36ALQ969Q0 106 aaKnown RBP13.67□□□□□ -0.22
NPHP4-206ENST00000468253 FRAS1Q86XX4 4008 aa13.67□□□□□ -0.22
NPHP4-206ENST00000468253 TRBV7-3A0A075B6L6 115 aa13.66□□□□□ -0.22
NPHP4-206ENST00000468253 A0A087WWC5 75 aa13.66□□□□□ -0.22
NPHP4-206ENST00000468253 TRAV8-6A0A0B4J262 113 aa13.66□□□□□ -0.22
NPHP4-206ENST00000468253 DNAH10OSP0CZ25 163 aa13.66□□□□□ -0.22
NPHP4-206ENST00000468253 RPL23P62829 140 aaKnown RBP13.66□□□□□ -0.22
NPHP4-206ENST00000468253 IFITM2Q01629 132 aa13.66□□□□□ -0.22
NPHP4-206ENST00000468253 C6orf223Q8N319 242 aa13.66□□□□□ -0.22
NPHP4-206ENST00000468253 C15orf54Q8N8G6 183 aa13.66□□□□□ -0.22
NPHP4-206ENST00000468253 TSKUQ8WUA8 353 aa13.66□□□□□ -0.22
NPHP4-206ENST00000468253 ISOC2Q96AB3 205 aa13.66□□□□□ -0.22
NPHP4-206ENST00000468253 F5H697 171 aa13.65□□□□□ -0.22
NPHP4-206ENST00000468253 TWIST1Q15672 202 aa13.65□□□□□ -0.22
NPHP4-206ENST00000468253 ZNF56Q15929 161 aa13.65□□□□□ -0.22
NPHP4-206ENST00000468253 EVI2AP22794 236 aa13.64□□□□□ -0.23
NPHP4-206ENST00000468253 IGHV3-38A0A0C4DH36 116 aa13.63□□□□□ -0.23
NPHP4-206ENST00000468253 UBE2D3P61077 147 aa13.63□□□□□ -0.23
NPHP4-206ENST00000468253 UBE2D2P62837 147 aa13.63□□□□□ -0.23
NPHP4-206ENST00000468253 KRTAP1-5Q9BYS1 174 aa13.63□□□□□ -0.23
NPHP4-206ENST00000468253 DPH3P1Q9H4G8 78 aa13.63□□□□□ -0.23
NPHP4-206ENST00000468253 V9GYV3 84 aa13.63□□□□□ -0.23
NPHP4-206ENST00000468253 FAT2Q9NYQ8 4349 aa13.63□□□□□ -0.23
NPHP4-206ENST00000468253 H7C1H1 209 aa13.62□□□□□ -0.23
NPHP4-206ENST00000468253 M0QY20 66 aa13.62□□□□□ -0.23
NPHP4-206ENST00000468253 LINC01556Q5JQF7 62 aa13.62□□□□□ -0.23
NPHP4-206ENST00000468253 OR10J3Q5JRS4 329 aa13.62□□□□□ -0.23
NPHP4-206ENST00000468253 WFDC10BQ8IUB3 73 aa13.62□□□□□ -0.23
NPHP4-206ENST00000468253 NEXN-AS1Q8NBZ9 246 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms