RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 C14orf178Q8N769 122 aaPredicted RBP12.83□□□□□ -0.36
SHH-203ENST00000435425 FER1L6-AS1Q8NA97 138 aa12.83□□□□□ -0.36
SHH-203ENST00000435425 SMIM7Q9BQ49 75 aa12.83□□□□□ -0.36
SHH-203ENST00000435425 XKRY2A2RUG3 117 aa12.82□□□□□ -0.36
SHH-203ENST00000435425 ZNF727A8MUV8 499 aa12.82□□□□□ -0.36
SHH-203ENST00000435425 GAGE12JA6NER3 117 aa12.81□□□□□ -0.36
SHH-203ENST00000435425 IGLC6P0CF74 106 aa12.81□□□□□ -0.36
SHH-203ENST00000435425 GAGE1Q13065 139 aa12.81□□□□□ -0.36
SHH-203ENST00000435425 GAGE4Q13068 117 aa12.81□□□□□ -0.36
SHH-203ENST00000435425 GAGE5Q13069 117 aa12.81□□□□□ -0.36
SHH-203ENST00000435425 GAGE13Q4V321 117 aa12.81□□□□□ -0.36
SHH-203ENST00000435425 SH2D6Q7Z4S9 175 aa12.81□□□□□ -0.36
SHH-203ENST00000435425 RPP21Q9H633 154 aaKnown RBP12.81□□□□□ -0.36
SHH-203ENST00000435425 SIVA1O15304 175 aa12.8□□□□□ -0.36
SHH-203ENST00000435425 SRSF3P84103 164 aaKnown RBP12.8□□□□□ -0.36
SHH-203ENST00000435425 Q9UF83 564 aa12.8□□□□□ -0.36
SHH-203ENST00000435425 C9JQL5 133 aa12.79□□□□□ -0.36
SHH-203ENST00000435425 GATCO43716 136 aaKnown RBP12.79□□□□□ -0.36
SHH-203ENST00000435425 NDUFS6O75380 124 aaKnown RBP12.79□□□□□ -0.36
SHH-203ENST00000435425 PEA15Q15121 130 aa12.79□□□□□ -0.36
SHH-203ENST00000435425 ZNF56Q15929 161 aa12.79□□□□□ -0.36
SHH-203ENST00000435425 C1orf134Q5TEV5 83 aa12.79□□□□□ -0.36
SHH-203ENST00000435425 LYZL1Q6UWQ5 148 aa12.79□□□□□ -0.36
SHH-203ENST00000435425 ERVFC1-1P60608 527 aa12.78□□□□□ -0.36
SHH-203ENST00000435425 ATP6V0E2Q8NHE4 81 aa12.78□□□□□ -0.36
SHH-203ENST00000435425 MSRB1Q9NZV6 116 aa12.78□□□□□ -0.36
SHH-203ENST00000435425 F5H697 171 aa12.77□□□□□ -0.37
SHH-203ENST00000435425 RTL8CO15255 209 aa12.77□□□□□ -0.37
SHH-203ENST00000435425 SMIM17P0DL12 118 aa12.77□□□□□ -0.37
SHH-203ENST00000435425 CACNG7P62955 275 aa12.77□□□□□ -0.37
SHH-203ENST00000435425 WFDC10BQ8IUB3 73 aa12.77□□□□□ -0.37
SHH-203ENST00000435425 LY96Q9Y6Y9 160 aa12.77□□□□□ -0.37
SHH-203ENST00000435425 F2Z2F3 143 aa12.76□□□□□ -0.37
SHH-203ENST00000435425 RAB14P61106 215 aa12.76□□□□□ -0.37
SHH-203ENST00000435425 TTC32Q5I0X7 151 aa12.76□□□□□ -0.37
SHH-203ENST00000435425 SOHLH1Q5JUK2 328 aa12.76□□□□□ -0.37
SHH-203ENST00000435425 LINC01551Q86U37 167 aa12.76□□□□□ -0.37
SHH-203ENST00000435425 AP1S3Q96PC3 154 aa12.76□□□□□ -0.37
SHH-203ENST00000435425 KRTAP1-5Q9BYS1 174 aa12.76□□□□□ -0.37
SHH-203ENST00000435425 A0A1W2PPQ1 181 aa12.75□□□□□ -0.37
SHH-203ENST00000435425 RAB4BP61018 213 aa12.75□□□□□ -0.37
SHH-203ENST00000435425 FAM231DQ6ZW35 169 aa12.75□□□□□ -0.37
SHH-203ENST00000435425 C6orf223Q8N319 242 aa12.75□□□□□ -0.37
SHH-203ENST00000435425 PRSS29PA6NIE9 313 aa12.74□□□□□ -0.37
SHH-203ENST00000435425 MGPP08493 103 aa12.74□□□□□ -0.37
SHH-203ENST00000435425 NTF3P20783 257 aa12.74□□□□□ -0.37
SHH-203ENST00000435425 TMEM241Q24JQ0 296 aa12.74□□□□□ -0.37
SHH-203ENST00000435425 OR10J3Q5JRS4 329 aa12.74□□□□□ -0.37
SHH-203ENST00000435425 LINC00336Q6ZUF6 198 aa12.74□□□□□ -0.37
SHH-203ENST00000435425 GTSF1LQ9H1H1 148 aa12.74□□□□□ -0.37
SHH-203ENST00000435425 DNAH10Q8IVF4 4471 aa12.73□□□□□ -0.37
SHH-203ENST00000435425 TIRAPP58753 221 aa12.73□□□□□ -0.37
SHH-203ENST00000435425 FAM74A3Q4VXF1 159 aa12.73□□□□□ -0.37
SHH-203ENST00000435425 KIF25-AS1Q9Y6Z4 181 aa12.73□□□□□ -0.37
SHH-203ENST00000435425 TRAV8-6A0A0B4J262 113 aa12.72□□□□□ -0.37
SHH-203ENST00000435425 A8MWL6 223 aa12.72□□□□□ -0.37
SHH-203ENST00000435425 LINC00694P0DN24 101 aa12.72□□□□□ -0.37
SHH-203ENST00000435425 CTRLP40313 264 aa12.72□□□□□ -0.37
SHH-203ENST00000435425 RPL36AP83881 106 aaKnown RBP12.72□□□□□ -0.37
SHH-203ENST00000435425 TWIST1Q15672 202 aa12.72□□□□□ -0.37
SHH-203ENST00000435425 GTSF1Q8WW33 167 aa12.72□□□□□ -0.37
SHH-203ENST00000435425 RPL36ALQ969Q0 106 aaKnown RBP12.72□□□□□ -0.37
SHH-203ENST00000435425 SMDT1Q9H4I9 107 aa12.72□□□□□ -0.37
SHH-203ENST00000435425 TRBV10-1A0A0K0K1A3 114 aa12.71□□□□□ -0.37
SHH-203ENST00000435425 TRGC1P0CF51 173 aa12.71□□□□□ -0.37
SHH-203ENST00000435425 EVI2AP22794 236 aa12.71□□□□□ -0.37
SHH-203ENST00000435425 RPL23P62829 140 aaKnown RBP12.71□□□□□ -0.37
SHH-203ENST00000435425 ADIRFQ15847 76 aa12.71□□□□□ -0.37
SHH-203ENST00000435425 LELP1Q5T871 98 aa12.71□□□□□ -0.37
SHH-203ENST00000435425 PGLYRP4Q96LB8 373 aa12.71□□□□□ -0.37
SHH-203ENST00000435425 NAT8Q9UHE5 227 aa12.71□□□□□ -0.37
SHH-203ENST00000435425 LINC00315P59091 139 aa12.7□□□□□ -0.38
SHH-203ENST00000435425 C15orf54Q8N8G6 183 aa12.7□□□□□ -0.38
SHH-203ENST00000435425 OSTCQ9NRP0 149 aa12.7□□□□□ -0.38
SHH-203ENST00000435425 TRBV7-3A0A075B6L6 115 aa12.69□□□□□ -0.38
SHH-203ENST00000435425 TRAV9-2A0A087WT02 112 aa12.69□□□□□ -0.38
SHH-203ENST00000435425 IFITM2Q01629 132 aa12.69□□□□□ -0.38
SHH-203ENST00000435425 WDR73Q6P4I2 378 aa12.69□□□□□ -0.38
SHH-203ENST00000435425 NEXN-AS1Q8NBZ9 246 aa12.69□□□□□ -0.38
SHH-203ENST00000435425 ISOC2Q96AB3 205 aa12.69□□□□□ -0.38
SHH-203ENST00000435425 EPPK1P58107 5090 aaKnown RBP12.69□□□□□ -0.38
SHH-203ENST00000435425 IGHV3-38A0A0C4DH36 116 aa12.68□□□□□ -0.38
SHH-203ENST00000435425 DNAH10OSP0CZ25 163 aa12.68□□□□□ -0.38
SHH-203ENST00000435425 CT83Q5H943 113 aa12.68□□□□□ -0.38
SHH-203ENST00000435425 DPH3P1Q9H4G8 78 aa12.68□□□□□ -0.38
SHH-203ENST00000435425 TNFRSF18Q9Y5U5 241 aa12.68□□□□□ -0.38
SHH-203ENST00000435425 IGHV3-30P01768 117 aa12.67□□□□□ -0.38
SHH-203ENST00000435425 IGHV3-33P01772 117 aa12.67□□□□□ -0.38
SHH-203ENST00000435425 IGHV3-30-3P0DP02 117 aa12.67□□□□□ -0.38
SHH-203ENST00000435425 IGHV3-30-5P0DP03 117 aa12.67□□□□□ -0.38
SHH-203ENST00000435425 UBE2D3P61077 147 aa12.67□□□□□ -0.38
SHH-203ENST00000435425 UBE2D2P62837 147 aa12.67□□□□□ -0.38
SHH-203ENST00000435425 SUMO4Q6EEV6 95 aa12.67□□□□□ -0.38
SHH-203ENST00000435425 TSKUQ8WUA8 353 aa12.67□□□□□ -0.38
SHH-203ENST00000435425 FRAS1Q86XX4 4008 aa12.66□□□□□ -0.38
SHH-203ENST00000435425 TNP2Q05952 138 aa12.66□□□□□ -0.38
SHH-203ENST00000435425 CLLU1Q5K131 121 aa12.66□□□□□ -0.38
SHH-203ENST00000435425 OR10G8Q8NGN5 311 aa12.66□□□□□ -0.38
SHH-203ENST00000435425 BORCS7Q96B45 105 aa12.66□□□□□ -0.38
SHH-203ENST00000435425 CNFNQ9BYD5 112 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms