RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 IGHV3-30-3P0DP02 117 aa14.56□□□□□ -0.08
CCDC28B-201ENST00000373602 IGHV3-30-5P0DP03 117 aa14.56□□□□□ -0.08
CCDC28B-201ENST00000373602 TPT1P13693 172 aaKnown RBP14.56□□□□□ -0.08
CCDC28B-201ENST00000373602 SFRP2Q96HF1 295 aa14.56□□□□□ -0.08
CCDC28B-201ENST00000373602 SCO2A0A1W2PP80 73 aa14.55□□□□□ -0.08
CCDC28B-201ENST00000373602 PFDN1O60925 122 aa14.55□□□□□ -0.08
CCDC28B-201ENST00000373602 TMUB2Q71RG4 321 aa14.55□□□□□ -0.08
CCDC28B-201ENST00000373602 FAM74A4Q5TZK3 123 aa14.54□□□□□ -0.08
CCDC28B-201ENST00000373602 ZFP82Q8N141 532 aa14.54□□□□□ -0.08
CCDC28B-201ENST00000373602 MLST8Q9BVC4 326 aa14.54□□□□□ -0.08
CCDC28B-201ENST00000373602 M0R381 172 aa14.53□□□□□ -0.08
CCDC28B-201ENST00000373602 PSCAO43653 123 aa14.53□□□□□ -0.08
CCDC28B-201ENST00000373602 A0A087WWL8 130 aa14.52□□□□□ -0.09
CCDC28B-201ENST00000373602 LRCOL1A6NCL2 159 aa14.52□□□□□ -0.09
CCDC28B-201ENST00000373602 LAGE3Q14657 143 aa14.52□□□□□ -0.09
CCDC28B-201ENST00000373602 BAGE2Q86Y30 109 aa14.52□□□□□ -0.09
CCDC28B-201ENST00000373602 Q9HAA7 133 aa14.52□□□□□ -0.09
CCDC28B-201ENST00000373602 A0A087WWC5 75 aa14.51□□□□□ -0.09
CCDC28B-201ENST00000373602 KRTAP10-1P60331 282 aa14.51□□□□□ -0.09
CCDC28B-201ENST00000373602 Q8N3U1 123 aa14.51□□□□□ -0.09
CCDC28B-201ENST00000373602 CXCL1P09341 107 aa14.5□□□□□ -0.09
CCDC28B-201ENST00000373602 RPL19P84098 196 aaKnown RBP14.49□□□□□ -0.09
CCDC28B-201ENST00000373602 TRAV1-1A0A0B4J248 108 aa14.48□□□□□ -0.09
CCDC28B-201ENST00000373602 XGP55808 180 aa14.48□□□□□ -0.09
CCDC28B-201ENST00000373602 CCL20P78556 96 aa14.48□□□□□ -0.09
CCDC28B-201ENST00000373602 MANBALQ9NQG1 85 aa14.48□□□□□ -0.09
CCDC28B-201ENST00000373602 TRBV10-1A0A0K0K1A3 114 aa14.47□□□□□ -0.09
CCDC28B-201ENST00000373602 GCSHP23434 173 aa14.47□□□□□ -0.09
CCDC28B-201ENST00000373602 RAB5CP51148 216 aa14.47□□□□□ -0.09
CCDC28B-201ENST00000373602 NTN5Q8WTR8 489 aaPredicted RBP14.47□□□□□ -0.09
CCDC28B-201ENST00000373602 SSBP4Q9BWG4 385 aaPredicted RBP14.47□□□□□ -0.09
CCDC28B-201ENST00000373602 TM2D2Q9BX73 214 aa14.47□□□□□ -0.09
CCDC28B-201ENST00000373602 RPL35P42766 123 aaKnown RBP14.46□□□□□ -0.09
CCDC28B-201ENST00000373602 OR10AG1Q8NH19 301 aa14.46□□□□□ -0.09
CCDC28B-201ENST00000373602 C11orf52Q96A22 123 aa14.46□□□□□ -0.09
CCDC28B-201ENST00000373602 GNG13Q9P2W3 67 aa14.46□□□□□ -0.09
CCDC28B-201ENST00000373602 TRAV8-3A0A0A6YYJ7 113 aa14.45□□□□□ -0.1
CCDC28B-201ENST00000373602 SNAI2O43623 268 aa14.45□□□□□ -0.1
CCDC28B-201ENST00000373602 EIF5AL1Q6IS14 154 aaKnown RBP14.45□□□□□ -0.1
CCDC28B-201ENST00000373602 PRR27Q6MZM9 219 aa14.45□□□□□ -0.1
CCDC28B-201ENST00000373602 DAZ4Q86SG3 579 aaKnown RBP14.45□□□□□ -0.1
CCDC28B-201ENST00000373602 Q8N814 137 aa14.45□□□□□ -0.1
CCDC28B-201ENST00000373602 DAZ3Q9NR90 486 aaKnown RBP14.45□□□□□ -0.1
CCDC28B-201ENST00000373602 IGLV5-52A0A0A0MRZ9 124 aa14.44□□□□□ -0.1
CCDC28B-201ENST00000373602 OR5AL1P0C617 328 aa14.44□□□□□ -0.1
CCDC28B-201ENST00000373602 RPL36AP83881 106 aaKnown RBP14.44□□□□□ -0.1
CCDC28B-201ENST00000373602 TOR2AQ5JU69 321 aa14.44□□□□□ -0.1
CCDC28B-201ENST00000373602 TCTE3Q8IZS6 198 aa14.44□□□□□ -0.1
CCDC28B-201ENST00000373602 RPL36ALQ969Q0 106 aaKnown RBP14.44□□□□□ -0.1
CCDC28B-201ENST00000373602 DERL1Q9BUN8 251 aa14.44□□□□□ -0.1
CCDC28B-201ENST00000373602 TRBV7-3A0A075B6L6 115 aa14.43□□□□□ -0.1
CCDC28B-201ENST00000373602 SULT1A2P50226 295 aa14.43□□□□□ -0.1
CCDC28B-201ENST00000373602 RAB4BP61018 213 aa14.43□□□□□ -0.1
CCDC28B-201ENST00000373602 UBE2D3P61077 147 aa14.43□□□□□ -0.1
CCDC28B-201ENST00000373602 UBE2D2P62837 147 aa14.43□□□□□ -0.1
CCDC28B-201ENST00000373602 NIT1Q86X76 327 aa14.43□□□□□ -0.1
CCDC28B-201ENST00000373602 OR10G8Q8NGN5 311 aa14.43□□□□□ -0.1
CCDC28B-201ENST00000373602 TEX46H3BTG2 121 aa14.42□□□□□ -0.1
CCDC28B-201ENST00000373602 EPM2AB3EWF7 344 aa14.41□□□□□ -0.1
CCDC28B-201ENST00000373602 URGCP-MRPS24S4R325 110 aa14.41□□□□□ -0.1
CCDC28B-201ENST00000373602 MUC21A0A0G2JKD1 596 aa14.4□□□□□ -0.1
CCDC28B-201ENST00000373602 MUC21A0A140T8X8 626 aa14.4□□□□□ -0.1
CCDC28B-201ENST00000373602 ZNF56Q15929 161 aa14.4□□□□□ -0.1
CCDC28B-201ENST00000373602 SPANXN1Q5VSR9 72 aa14.4□□□□□ -0.1
CCDC28B-201ENST00000373602 IGLV2-8P01709 118 aa14.39□□□□□ -0.11
CCDC28B-201ENST00000373602 WFDC2Q14508 124 aa14.39□□□□□ -0.11
CCDC28B-201ENST00000373602 CENPWQ5EE01 88 aa14.39□□□□□ -0.11
CCDC28B-201ENST00000373602 NEXN-AS1Q8NBZ9 246 aa14.39□□□□□ -0.11
CCDC28B-201ENST00000373602 CHCHD7Q9BUK0 85 aa14.39□□□□□ -0.11
CCDC28B-201ENST00000373602 SLC51BQ86UW2 128 aa14.38□□□□□ -0.11
CCDC28B-201ENST00000373602 COX11Q9Y6N1 276 aa14.38□□□□□ -0.11
CCDC28B-201ENST00000373602 C1QBP02746 253 aa14.37□□□□□ -0.11
CCDC28B-201ENST00000373602 MEF2BQ02080 365 aaPredicted RBP14.37□□□□□ -0.11
CCDC28B-201ENST00000373602 TMEM70Q9BUB7 260 aa14.37□□□□□ -0.11
CCDC28B-201ENST00000373602 KLK12Q9UKR0 248 aa14.37□□□□□ -0.11
CCDC28B-201ENST00000373602 KIF25-AS1Q9Y6Z4 181 aa14.37□□□□□ -0.11
CCDC28B-201ENST00000373602 A0A087WX48 190 aa14.36□□□□□ -0.11
CCDC28B-201ENST00000373602 RAB19A4D1S5 217 aa14.36□□□□□ -0.11
CCDC28B-201ENST00000373602 PDE6DO43924 150 aa14.36□□□□□ -0.11
CCDC28B-201ENST00000373602 IFNA1P01562 189 aa14.36□□□□□ -0.11
CCDC28B-201ENST00000373602 SSTP61278 116 aa14.36□□□□□ -0.11
CCDC28B-201ENST00000373602 RMI2Q96E14 147 aa14.36□□□□□ -0.11
CCDC28B-201ENST00000373602 SMIM12Q96EX1 92 aa14.36□□□□□ -0.11
CCDC28B-201ENST00000373602 TRBV6-8A0A0A6YYG3 113 aa14.35□□□□□ -0.11
CCDC28B-201ENST00000373602 C19orf71A6NCJ1 209 aa14.35□□□□□ -0.11
CCDC28B-201ENST00000373602 F5H697 171 aa14.35□□□□□ -0.11
CCDC28B-201ENST00000373602 IGLC6P0CF74 106 aa14.35□□□□□ -0.11
CCDC28B-201ENST00000373602 GNG4P50150 75 aa14.35□□□□□ -0.11
CCDC28B-201ENST00000373602 ELOBQ15370 118 aa14.35□□□□□ -0.11
CCDC28B-201ENST00000373602 KCNIP4Q6PIL6 250 aa14.35□□□□□ -0.11
CCDC28B-201ENST00000373602 Q6ZNX1 250 aa14.35□□□□□ -0.11
CCDC28B-201ENST00000373602 DAZAP1Q96EP5 407 aaKnown RBP14.35□□□□□ -0.11
CCDC28B-201ENST00000373602 DNAJC30Q96LL9 226 aa14.35□□□□□ -0.11
CCDC28B-201ENST00000373602 AP1S3Q96PC3 154 aa14.35□□□□□ -0.11
CCDC28B-201ENST00000373602 FAT1Q14517 4588 aa14.35□□□□□ -0.11
CCDC28B-201ENST00000373602 SMIM17P0DL12 118 aa14.34□□□□□ -0.11
CCDC28B-201ENST00000373602 GZMBP10144 247 aa14.34□□□□□ -0.11
CCDC28B-201ENST00000373602 BCL2P10415 239 aa14.34□□□□□ -0.11
CCDC28B-201ENST00000373602 RPS20P60866 119 aaKnown RBP14.34□□□□□ -0.11
CCDC28B-201ENST00000373602 OR2D3Q8NGH3 330 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 1324.9 ms