RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 NDUFA11Q86Y39 141 aa14.88□□□□□ -0.03
USP48-201ENST00000308271 UBE2E2Q96LR5 201 aa14.88□□□□□ -0.03
USP48-201ENST00000308271 TRAV13-2A0A0B4J235 113 aa14.87□□□□□ -0.03
USP48-201ENST00000308271 IGLV2-11P01706 119 aa14.87□□□□□ -0.03
USP48-201ENST00000308271 SPANXCQ9NY87 97 aa14.87□□□□□ -0.03
USP48-201ENST00000308271 IGHV3-16A0A0C4DH30 117 aa14.87□□□□□ -0.03
USP48-201ENST00000308271 RPL39P62891 51 aaKnown RBP14.87□□□□□ -0.03
USP48-201ENST00000308271 IGHV3-38A0A0C4DH36 116 aa14.87□□□□□ -0.03
USP48-201ENST00000308271 VWC2LB2RUY7 222 aa14.86□□□□□ -0.03
USP48-201ENST00000308271 K7ENP7 123 aa14.86□□□□□ -0.03
USP48-201ENST00000308271 C11orf68Q9H3H3 251 aaKnown RBP14.86□□□□□ -0.03
USP48-201ENST00000308271 IGF2RP11717 2491 aa14.86□□□□□ -0.03
USP48-201ENST00000308271 RNASE13Q5GAN3 156 aaKnown RBP14.86□□□□□ -0.03
USP48-201ENST00000308271 ZNRF2Q8NHG8 242 aa14.86□□□□□ -0.03
USP48-201ENST00000308271 LAMTOR3Q9UHA4 124 aa14.86□□□□□ -0.03
USP48-201ENST00000308271 ICOSQ9Y6W8 199 aa14.86□□□□□ -0.03
USP48-201ENST00000308271 MSMBP08118 114 aa14.86□□□□□ -0.03
USP48-201ENST00000308271 Q6ZUT4 128 aa14.86□□□□□ -0.03
USP48-201ENST00000308271 TRBV10-2A0A0K0K1G8 114 aa14.85□□□□□ -0.03
USP48-201ENST00000308271 URB1-AS1Q96HZ7 61 aa14.85□□□□□ -0.03
USP48-201ENST00000308271 CRYGBP07316 175 aa14.84□□□□□ -0.03
USP48-201ENST00000308271 SMIM20Q8N5G0 67 aa14.84□□□□□ -0.03
USP48-201ENST00000308271 CPAMD8Q8IZJ3 1885 aa14.84□□□□□ -0.03
USP48-201ENST00000308271 H3BT86 120 aa14.83□□□□□ -0.03
USP48-201ENST00000308271 GATA3P23771 443 aa14.83□□□□□ -0.04
USP48-201ENST00000308271 GOLGB1Q14789 3259 aaKnown RBP14.83□□□□□ -0.04
USP48-201ENST00000308271 CSPG4Q6UVK1 2322 aa14.83□□□□□ -0.04
USP48-201ENST00000308271 TCL1BO95988 128 aa14.82□□□□□ -0.04
USP48-201ENST00000308271 BAALC-AS2P0C853 105 aa14.82□□□□□ -0.04
USP48-201ENST00000308271 Q9H8V8 135 aa14.82□□□□□ -0.04
USP48-201ENST00000308271 XCL2Q9UBD3 114 aa14.82□□□□□ -0.04
USP48-201ENST00000308271 MAPKAPK5-AS1Q8N8E1 139 aa14.82□□□□□ -0.04
USP48-201ENST00000308271 TMEM243Q9BU79 118 aa14.82□□□□□ -0.04
USP48-201ENST00000308271 TRACP01848 142 aa14.81□□□□□ -0.04
USP48-201ENST00000308271 SS18Q15532 418 aa14.81□□□□□ -0.04
USP48-201ENST00000308271 RNF185Q96GF1 192 aa14.8□□□□□ -0.04
USP48-201ENST00000308271 IGF2-ASQ6U949 168 aa14.8□□□□□ -0.04
USP48-201ENST00000308271 NEXN-AS1Q8NBZ9 246 aa14.8□□□□□ -0.04
USP48-201ENST00000308271 DSCAML1Q8TD84 2053 aa14.8□□□□□ -0.04
USP48-201ENST00000308271 NAV3Q8IVL0 2385 aa14.8□□□□□ -0.04
USP48-201ENST00000308271 MT-ATP8P03928 68 aa14.8□□□□□ -0.04
USP48-201ENST00000308271 C11orf44Q8N8P7 122 aa14.8□□□□□ -0.04
USP48-201ENST00000308271 LRP4O75096 1905 aa14.79□□□□□ -0.04
USP48-201ENST00000308271 PFN2P35080 140 aa14.79□□□□□ -0.04
USP48-201ENST00000308271 UFSP1Q6NVU6 142 aa14.79□□□□□ -0.04
USP48-201ENST00000308271 UBL5Q9BZL1 73 aa14.78□□□□□ -0.04
USP48-201ENST00000308271 CCDC168Q8NDH2 2452 aa14.78□□□□□ -0.04
USP48-201ENST00000308271 RNF183Q96D59 192 aa14.78□□□□□ -0.04
USP48-201ENST00000308271 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.78□□□□□ -0.04
USP48-201ENST00000308271 IGKV2-29A2NJV5 120 aaPredicted RBP14.78□□□□□ -0.04
USP48-201ENST00000308271 HERV-K104P63124 156 aa14.77□□□□□ -0.04
USP48-201ENST00000308271 LINC01356Q8N9X3 169 aa14.77□□□□□ -0.04
USP48-201ENST00000308271 GRNP28799 593 aaKnown RBP14.77□□□□□ -0.04
USP48-201ENST00000308271 C5orf56Q8N8D9 126 aa14.76□□□□□ -0.05
USP48-201ENST00000308271 HTN3P15516 51 aa14.76□□□□□ -0.05
USP48-201ENST00000308271 AJUBAQ96IF1 538 aa14.76□□□□□ -0.05
USP48-201ENST00000308271 TMEM126AQ9H061 195 aa14.76□□□□□ -0.05
USP48-201ENST00000308271 LINC01619G3V211 115 aa14.75□□□□□ -0.05
USP48-201ENST00000308271 ELANEP08246 267 aa14.75□□□□□ -0.05
USP48-201ENST00000308271 SLC25A29Q8N8R3 303 aa14.75□□□□□ -0.05
USP48-201ENST00000308271 C20orf203Q8NBC4 194 aa14.75□□□□□ -0.05
USP48-201ENST00000308271 A0A0B4J2C4 111 aa14.75□□□□□ -0.05
USP48-201ENST00000308271 SPATA25Q9BR10 227 aa14.75□□□□□ -0.05
USP48-201ENST00000308271 FAM236AA0A1B0GUQ0 79 aa14.74□□□□□ -0.05
USP48-201ENST00000308271 FAM236BA0A1B0GV22 79 aa14.74□□□□□ -0.05
USP48-201ENST00000308271 GNLYP22749 145 aa14.74□□□□□ -0.05
USP48-201ENST00000308271 RPL35AP18077 110 aaKnown RBP14.73□□□□□ -0.05
USP48-201ENST00000308271 Q71RC1 249 aaPredicted RBP14.73□□□□□ -0.05
USP48-201ENST00000308271 Q8N1Y9 231 aa14.73□□□□□ -0.05
USP48-201ENST00000308271 CITED1Q99966 193 aa14.73□□□□□ -0.05
USP48-201ENST00000308271 PTPRSQ13332 1948 aa14.73□□□□□ -0.05
USP48-201ENST00000308271 A0A0J9YY99 117 aa14.73□□□□□ -0.05
USP48-201ENST00000308271 TANC2Q9HCD6 1990 aa14.72□□□□□ -0.05
USP48-201ENST00000308271 K7EMT4 169 aa14.72□□□□□ -0.05
USP48-201ENST00000308271 IGHV1-58A0A0C4DH39 117 aa14.71□□□□□ -0.05
USP48-201ENST00000308271 LGALS9O00182 355 aa14.71□□□□□ -0.05
USP48-201ENST00000308271 RPL32P62910 135 aaKnown RBP14.71□□□□□ -0.05
USP48-201ENST00000308271 IGHV3-30-3P0DP02 117 aa14.71□□□□□ -0.05
USP48-201ENST00000308271 DEFB1P60022 68 aa14.71□□□□□ -0.05
USP48-201ENST00000308271 ODF3BA8MYP8 253 aa14.71□□□□□ -0.05
USP48-201ENST00000308271 NDUFV3P56181 108 aaKnown RBP14.71□□□□□ -0.05
USP48-201ENST00000308271 CCDC140Q96MF4 163 aa14.71□□□□□ -0.05
USP48-201ENST00000308271 WDR87Q6ZQQ6 2873 aa14.7□□□□□ -0.06
USP48-201ENST00000308271 C22orf34Q6ZV56 151 aa14.7□□□□□ -0.06
USP48-201ENST00000308271 ATOX1O00244 68 aa14.7□□□□□ -0.06
USP48-201ENST00000308271 COL5A1P20908 1838 aaPredicted RBP14.69□□□□□ -0.06
USP48-201ENST00000308271 U3KQE9 123 aa14.69□□□□□ -0.06
USP48-201ENST00000308271 H0YGX0 51 aa14.69□□□□□ -0.06
USP48-201ENST00000308271 NBL1P41271 181 aa14.69□□□□□ -0.06
USP48-201ENST00000308271 CLEC2BQ92478 149 aa14.69□□□□□ -0.06
USP48-201ENST00000308271 FSTL3O95633 263 aa14.68□□□□□ -0.06
USP48-201ENST00000308271 SMAD5-AS1Q9Y6J3 95 aa14.68□□□□□ -0.06
USP48-201ENST00000308271 CFAP126Q5VTH2 177 aa14.68□□□□□ -0.06
USP48-201ENST00000308271 UNQ9165/PRO28630Q6UXU0 137 aa14.68□□□□□ -0.06
USP48-201ENST00000308271 MDFICQ9P1T7 246 aa14.68□□□□□ -0.06
USP48-201ENST00000308271 TINCRA0A1B0GVN0 87 aa14.68□□□□□ -0.06
USP48-201ENST00000308271 LY6LH3BQJ8 138 aa14.68□□□□□ -0.06
USP48-201ENST00000308271 DEFB130BP0DP73 79 aa14.68□□□□□ -0.06
USP48-201ENST00000308271 DEFB130AP0DP74 79 aa14.68□□□□□ -0.06
USP48-201ENST00000308271 SIRPDQ9H106 197 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms