RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 TLN2Q9Y4G6 2542 aa4.16□□□□□ -1.74
SCN1A-201ENST00000303395 IGHV1-58A0A0C4DH39 117 aa4.15□□□□□ -1.74
SCN1A-201ENST00000303395 DKK1O94907 266 aa4.15□□□□□ -1.74
SCN1A-201ENST00000303395 IGHV1-2P23083 117 aa4.15□□□□□ -1.74
SCN1A-201ENST00000303395 UPK3BQ9BT76 320 aa4.15□□□□□ -1.74
SCN1A-201ENST00000303395 LINC00473A8K010 186 aa4.15□□□□□ -1.74
SCN1A-201ENST00000303395 CFHR3Q02985 330 aa4.15□□□□□ -1.74
SCN1A-201ENST00000303395 MPLKIPQ8TAP9 179 aa4.15□□□□□ -1.74
SCN1A-201ENST00000303395 ZC2HC1AQ96GY0 325 aa4.15□□□□□ -1.74
SCN1A-201ENST00000303395 MLST8Q9BVC4 326 aa4.15□□□□□ -1.74
SCN1A-201ENST00000303395 TRAV3A0A0B4J244 114 aa4.15□□□□□ -1.74
SCN1A-201ENST00000303395 LOC101059948A0A1B0GTJ6 334 aa4.15□□□□□ -1.74
SCN1A-201ENST00000303395 MRPL51Q4U2R6 128 aaKnown RBP4.15□□□□□ -1.74
SCN1A-201ENST00000303395 SP5Q6BEB4 398 aaPredicted RBP4.15□□□□□ -1.74
SCN1A-201ENST00000303395 TOMM6Q96B49 74 aa4.15□□□□□ -1.74
SCN1A-201ENST00000303395 PYGO1Q9Y3Y4 419 aa4.15□□□□□ -1.74
SCN1A-201ENST00000303395 TRBV30A0A0K0K1B3 111 aa4.15□□□□□ -1.75
SCN1A-201ENST00000303395 BUB1B-PAK6H3BSN5 160 aa4.15□□□□□ -1.75
SCN1A-201ENST00000303395 VPREB1P12018 145 aa4.15□□□□□ -1.75
SCN1A-201ENST00000303395 UBE2E1P51965 193 aa4.15□□□□□ -1.75
SCN1A-201ENST00000303395 C10orf105Q8TEF2 133 aa4.15□□□□□ -1.75
SCN1A-201ENST00000303395 RNF185Q96GF1 192 aa4.15□□□□□ -1.75
SCN1A-201ENST00000303395 PRORYQ9H606 182 aa4.15□□□□□ -1.75
SCN1A-201ENST00000303395 TRBV10-3A0A0K0K1G6 114 aa4.15□□□□□ -1.75
SCN1A-201ENST00000303395 GAFA1Q96PS6 74 aa4.15□□□□□ -1.75
SCN1A-201ENST00000303395 TRAV4A0A0B4J268 109 aa4.15□□□□□ -1.75
SCN1A-201ENST00000303395 LINC01565O15544 149 aa4.15□□□□□ -1.75
SCN1A-201ENST00000303395 EFNA2O43921 213 aa4.15□□□□□ -1.75
SCN1A-201ENST00000303395 C14orf178Q8N769 122 aaPredicted RBP4.15□□□□□ -1.75
SCN1A-201ENST00000303395 MDFICQ9P1T7 246 aa4.15□□□□□ -1.75
SCN1A-201ENST00000303395 ODF1Q14990 250 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-201ENST00000303395 CLPSL2Q6UWE3 100 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 COL5A1P20908 1838 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-201ENST00000303395 IGKV2-40A0A087WW87 121 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-201ENST00000303395 IGKV2D-40P01614 121 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-201ENST00000303395 PYYP10082 97 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 UBE2D3P61077 147 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 GNG5P63218 68 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 CAMK2N2Q96S95 79 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 SS18L2Q9UHA2 77 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 A0A087WWL8 130 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 XCL1P47992 114 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 TFF2Q03403 129 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 C7orf33Q8WU49 177 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 A6NED7 52 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 TRBV12-3P01733 135 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 PLA2G1BP04054 148 aaKnown RBP4.14□□□□□ -1.75
SCN1A-201ENST00000303395 ARMS2P0C7Q2 107 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 CCDC140Q96MF4 163 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 NDUFV3P56181 108 aaKnown RBP4.14□□□□□ -1.75
SCN1A-201ENST00000303395 UFSP1Q6NVU6 142 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 hDV102S1A0JD36 115 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 Q6ZUT4 128 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 FAM167A-AS1Q96KT0 104 aa4.14□□□□□ -1.75
SCN1A-201ENST00000303395 OPRPNQ99935 248 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-201ENST00000303395 TRBV6-5A0A0K0K1A5 114 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 IGHV1-46P01743 117 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 LTBP2Q14767 1821 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 IGKV1D-17A0A075B6S4 117 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 ELANEP08246 267 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 CELA3BP08861 270 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 ZNF134P52741 427 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 VMO1Q7Z5L0 202 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 PTH2Q96A98 100 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 LRCOL1A6NCL2 159 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 F8WDY8 70 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 H3BUX3 64 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 MYCNOSP40205 109 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 A0A0G2JRQ6 117 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 RNASE8Q8TDE3 154 aaKnown RBP4.13□□□□□ -1.75
SCN1A-201ENST00000303395 KLK9Q9UKQ9 250 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 CD177Q8N6Q3 437 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 COX7B2Q8TF08 81 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 MRPL35Q9NZE8 188 aaKnown RBP4.13□□□□□ -1.75
SCN1A-201ENST00000303395 XCL2Q9UBD3 114 aa4.13□□□□□ -1.75
SCN1A-201ENST00000303395 PLA2G2AP14555 144 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 SLC25A29Q8N8R3 303 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 C20orf173Q96LM9 149 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 TP53TG1Q9Y2A0 90 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 LRP4O75096 1905 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 IGHV1-18A0A0C4DH31 117 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 DAZ2Q13117 558 aaKnown RBP4.12□□□□□ -1.75
SCN1A-201ENST00000303395 DAZ4Q86SG3 579 aaKnown RBP4.12□□□□□ -1.75
SCN1A-201ENST00000303395 DAZ3Q9NR90 486 aaKnown RBP4.12□□□□□ -1.75
SCN1A-201ENST00000303395 ICOSQ9Y6W8 199 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 FAM236DA0A1B0GTK5 79 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 LINC01546A6NGU7 62 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 FAM236CP0DP71 79 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 PCP2Q8IVA1 136 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 FAM110AQ9BQ89 295 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 K7EN84 100 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 PTPRSQ13332 1948 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 VWCEQ96DN2 955 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 IGFL2Q6UWQ7 119 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 IGLC6P0CF74 106 aa4.12□□□□□ -1.75
SCN1A-201ENST00000303395 IGHV1OR15-1A0A075B7D0 117 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 TMEM256-PLSCR3K7ERE1 68 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 COX7A2LO14548 114 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 FAM216BQ8N7L0 139 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms