RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 F8W1H4 67 aa16.48■□□□□ 0.23
TPM4-201ENST00000300933 FSHBP01225 129 aa16.48■□□□□ 0.23
TPM4-201ENST00000300933 NXT2Q9NPJ8 142 aaKnown RBP16.48■□□□□ 0.23
TPM4-201ENST00000300933 ZNF688P0C7X2 276 aa16.47■□□□□ 0.23
TPM4-201ENST00000300933 DUX3Q96PT4 197 aa16.47■□□□□ 0.23
TPM4-201ENST00000300933 IGHV4OR15-8A0A075B7B6 117 aa16.47■□□□□ 0.23
TPM4-201ENST00000300933 A0A087WW49 117 aa16.47■□□□□ 0.23
TPM4-201ENST00000300933 C12orf74Q32Q52 190 aa16.47■□□□□ 0.23
TPM4-201ENST00000300933 SPANXN1Q5VSR9 72 aa16.47■□□□□ 0.23
TPM4-201ENST00000300933 HIST1H4GQ99525 98 aa16.47■□□□□ 0.23
TPM4-201ENST00000300933 NIPBLQ6KC79 2804 aaeCLIP16.47■□□□□ 0.236e-6■■■□□ 16.7
TPM4-201ENST00000300933 GNRH2O43555 120 aa16.46■□□□□ 0.23
TPM4-201ENST00000300933 SRSF2Q01130 221 aaKnown RBP16.46■□□□□ 0.23
TPM4-201ENST00000300933 LINC00477Q96M19 166 aa16.46■□□□□ 0.23
TPM4-201ENST00000300933 CLUHP3Q96NS8 147 aa16.46■□□□□ 0.23
TPM4-201ENST00000300933 CNFNQ9BYD5 112 aa16.46■□□□□ 0.23
TPM4-201ENST00000300933 J3QR89 54 aa16.46■□□□□ 0.23
TPM4-201ENST00000300933 M0R381 172 aa16.46■□□□□ 0.23
TPM4-201ENST00000300933 NOTCH2Q04721 2471 aa16.46■□□□□ 0.22
TPM4-201ENST00000300933 OVOL1O14753 267 aa16.45■□□□□ 0.22
TPM4-201ENST00000300933 ANXA2RQ3ZCQ2 193 aa16.44■□□□□ 0.22
TPM4-201ENST00000300933 DCANP1Q8TF63 244 aa16.44■□□□□ 0.22
TPM4-201ENST00000300933 PDZD2O15018 2839 aa16.44■□□□□ 0.22
TPM4-201ENST00000300933 ATP5LO75964 103 aa16.43■□□□□ 0.22
TPM4-201ENST00000300933 SCGB1A1P11684 91 aa16.43■□□□□ 0.22
TPM4-201ENST00000300933 A0A1B0GV72 72 aa16.43■□□□□ 0.22
TPM4-201ENST00000300933 GAGE13Q4V321 117 aa16.43■□□□□ 0.22
TPM4-201ENST00000300933 PSMG4Q5JS54 123 aa16.43■□□□□ 0.22
TPM4-201ENST00000300933 S100A4P26447 101 aaKnown RBP16.42■□□□□ 0.22
TPM4-201ENST00000300933 MYOZ3Q8TDC0 251 aa16.42■□□□□ 0.22
TPM4-201ENST00000300933 LINC01546A6NGU7 62 aa16.42■□□□□ 0.22
TPM4-201ENST00000300933 HOXD3P31249 432 aaPredicted RBP16.42■□□□□ 0.22
TPM4-201ENST00000300933 KHDC1LQ5JSQ8 128 aa16.41■□□□□ 0.22
TPM4-201ENST00000300933 Q8N8P6 123 aa16.41■□□□□ 0.22
TPM4-201ENST00000300933 ZNF580Q9UK33 172 aa16.41■□□□□ 0.22
TPM4-201ENST00000300933 HECTD1Q9ULT8 2610 aa16.4■□□□□ 0.22
TPM4-201ENST00000300933 TRAV21A0A0B4J279 112 aa16.4■□□□□ 0.22
TPM4-201ENST00000300933 K7EMT4 169 aa16.4■□□□□ 0.22
TPM4-201ENST00000300933 SLURP1P55000 103 aa16.4■□□□□ 0.22
TPM4-201ENST00000300933 SPATA25Q9BR10 227 aa16.4■□□□□ 0.22
TPM4-201ENST00000300933 FASNP49327 2511 aaKnown RBP16.4■□□□□ 0.22
TPM4-201ENST00000300933 TRAV12-2A0A075B6T6 113 aa16.4■□□□□ 0.22
TPM4-201ENST00000300933 MUC4Q99102 2169 aa16.39■□□□□ 0.21
TPM4-201ENST00000300933 SFTA2Q6UW10 78 aa16.39■□□□□ 0.21
TPM4-201ENST00000300933 C11orf44Q8N8P7 122 aa16.39■□□□□ 0.21
TPM4-201ENST00000300933 IGLV2-18A0A075B6J9 118 aa16.39■□□□□ 0.21
TPM4-201ENST00000300933 A0A1B0GWB2 263 aa16.39■□□□□ 0.21
TPM4-201ENST00000300933 UNC79Q9P2D8 2635 aa16.38■□□□□ 0.21
TPM4-201ENST00000300933 NOTCH3Q9UM47 2321 aa16.38■□□□□ 0.21
TPM4-201ENST00000300933 TRAV12-3A0A0B4J271 114 aa16.38■□□□□ 0.21
TPM4-201ENST00000300933 LGALS1P09382 135 aaKnown RBP16.38■□□□□ 0.21
TPM4-201ENST00000300933 CKS1BP61024 79 aa16.38■□□□□ 0.21
TPM4-201ENST00000300933 LAGE3Q14657 143 aa16.38■□□□□ 0.21
TPM4-201ENST00000300933 RRN3P1Q2M238 152 aa16.38■□□□□ 0.21
TPM4-201ENST00000300933 LRRC75A-AS1Q8N1F1 130 aa16.38■□□□□ 0.21
TPM4-201ENST00000300933 C14orf178Q8N769 122 aaPredicted RBP16.38■□□□□ 0.21
TPM4-201ENST00000300933 CYSLTR1Q9Y271 337 aa16.38■□□□□ 0.21
TPM4-201ENST00000300933 LENEPQ9Y5L5 61 aa16.38■□□□□ 0.21
TPM4-201ENST00000300933 DEFB104AQ8WTQ1 72 aa16.37■□□□□ 0.21
TPM4-201ENST00000300933 FAM19A4Q96LR4 140 aa16.37■□□□□ 0.21
TPM4-201ENST00000300933 C20orf78Q9BR46 151 aa16.37■□□□□ 0.21
TPM4-201ENST00000300933 PRO0461Q9UI25 63 aa16.36■□□□□ 0.21
TPM4-201ENST00000300933 PHLDA3Q9Y5J5 127 aa16.36■□□□□ 0.21
TPM4-201ENST00000300933 A0A087WX48 190 aa16.36■□□□□ 0.21
TPM4-201ENST00000300933 ID1P41134 155 aa16.36■□□□□ 0.21
TPM4-201ENST00000300933 GCN1Q92616 2671 aaKnown RBP16.35■□□□□ 0.21
TPM4-201ENST00000300933 APOMO95445 188 aa16.35■□□□□ 0.21
TPM4-201ENST00000300933 ELANEP08246 267 aa16.35■□□□□ 0.21
TPM4-201ENST00000300933 ASIPP42127 132 aa16.35■□□□□ 0.21
TPM4-201ENST00000300933 UBE2E2Q96LR5 201 aa16.35■□□□□ 0.21
TPM4-201ENST00000300933 TAL2Q16559 108 aa16.34■□□□□ 0.21
TPM4-201ENST00000300933 JPT2Q9H910 190 aa16.34■□□□□ 0.21
TPM4-201ENST00000300933 KMT2BQ9UMN6 2715 aaPredicted RBP16.34■□□□□ 0.21
TPM4-201ENST00000300933 TRBV7-3A0A075B6L6 115 aa16.33■□□□□ 0.21
TPM4-201ENST00000300933 RNASE3P12724 160 aaKnown RBP16.33■□□□□ 0.21
TPM4-201ENST00000300933 TCTEX1D4Q5JR98 221 aa16.33■□□□□ 0.21
TPM4-201ENST00000300933 NRACQ8N912 160 aa16.33■□□□□ 0.21
TPM4-201ENST00000300933 HLA-DRB4P13762 266 aa16.33■□□□□ 0.2
TPM4-201ENST00000300933 HLA-DRB4X5D2U9 266 aa16.33■□□□□ 0.2
TPM4-201ENST00000300933 PGPEP1Q9NXJ5 209 aa16.32■□□□□ 0.2
TPM4-201ENST00000300933 MGPP08493 103 aa16.32■□□□□ 0.2
TPM4-201ENST00000300933 SPINK13Q1W4C9 94 aa16.32■□□□□ 0.2
TPM4-201ENST00000300933 OR11H1Q8NG94 326 aa16.32■□□□□ 0.2
TPM4-201ENST00000300933 TMEM89A2RUT3 159 aa16.32■□□□□ 0.2
TPM4-201ENST00000300933 OR11H12B2RN74 326 aa16.32■□□□□ 0.2
TPM4-201ENST00000300933 PLNP26678 52 aa16.32■□□□□ 0.2
TPM4-201ENST00000300933 OR11H2Q8NH07 326 aa16.32■□□□□ 0.2
TPM4-201ENST00000300933 MORN3Q6PF18 240 aaPredicted RBP16.31■□□□□ 0.2
TPM4-201ENST00000300933 RPL39LQ96EH5 51 aaKnown RBP16.31■□□□□ 0.2
TPM4-201ENST00000300933 MRPL16Q9NX20 251 aaKnown RBP16.31■□□□□ 0.2
TPM4-201ENST00000300933 MYMXA0A1B0GTQ4 84 aa16.31■□□□□ 0.2
TPM4-201ENST00000300933 SYT8Q8NBV8 401 aa16.31■□□□□ 0.2
TPM4-201ENST00000300933 K7EQG2 157 aa16.3■□□□□ 0.2
TPM4-201ENST00000300933 CD7P09564 240 aa16.3■□□□□ 0.2
TPM4-201ENST00000300933 SNRPD3P62318 126 aaKnown RBP16.3■□□□□ 0.2
TPM4-201ENST00000300933 SCGB2A2Q13296 93 aa16.3■□□□□ 0.2
TPM4-201ENST00000300933 TRAV26-1A0A087WT03 109 aa16.3■□□□□ 0.2
TPM4-201ENST00000300933 KLLNB2CW77 178 aa16.3■□□□□ 0.2
TPM4-201ENST00000300933 FAM159AQ6UWV7 190 aa16.3■□□□□ 0.2
TPM4-201ENST00000300933 IGHV4-4A0A075B6R2 117 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms