RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 ANKRD39Q53RE8 183 aa10.49□□□□□ -0.73
SF3A1-201ENST00000215793 HIST2H2BCQ6DN03 193 aa10.48□□□□□ -0.73
SF3A1-201ENST00000215793 IGLV2-23P01705 113 aa10.48□□□□□ -0.73
SF3A1-201ENST00000215793 CCL18P55774 89 aa10.48□□□□□ -0.73
SF3A1-201ENST00000215793 C2orf70A6NJV1 201 aa10.48□□□□□ -0.73
SF3A1-201ENST00000215793 Q8N1Y9 231 aa10.48□□□□□ -0.73
SF3A1-201ENST00000215793 PLXND1Q9Y4D7 1925 aa10.47□□□□□ -0.73
SF3A1-201ENST00000215793 ADORA2A-AS1P86434 159 aa10.47□□□□□ -0.73
SF3A1-201ENST00000215793 A4D1N5 150 aa10.47□□□□□ -0.73
SF3A1-201ENST00000215793 GTSF1Q8WW33 167 aa10.47□□□□□ -0.73
SF3A1-201ENST00000215793 TIMM17AQ99595 171 aa10.47□□□□□ -0.73
SF3A1-201ENST00000215793 OPRPNQ99935 248 aaPredicted RBP10.47□□□□□ -0.73
SF3A1-201ENST00000215793 TRBV7-3A0A075B6L6 115 aa10.47□□□□□ -0.73
SF3A1-201ENST00000215793 IGHV4OR15-8A0A075B7B6 117 aa10.47□□□□□ -0.73
SF3A1-201ENST00000215793 A0A087WW49 117 aa10.47□□□□□ -0.73
SF3A1-201ENST00000215793 IGHG2P01859 326 aa10.47□□□□□ -0.73
SF3A1-201ENST00000215793 PLA2G2EQ9NZK7 142 aa10.47□□□□□ -0.73
SF3A1-201ENST00000215793 TRBV6-1A0A0K0K1D8 114 aa10.46□□□□□ -0.73
SF3A1-201ENST00000215793 CTRLP40313 264 aa10.46□□□□□ -0.73
SF3A1-201ENST00000215793 MUSTN1Q8IVN3 82 aa10.46□□□□□ -0.73
SF3A1-201ENST00000215793 ZNF503Q96F45 646 aa10.46□□□□□ -0.73
SF3A1-201ENST00000215793 SPRY4Q9C004 299 aa10.46□□□□□ -0.73
SF3A1-201ENST00000215793 PRAC2D3DTV9 90 aa10.46□□□□□ -0.73
SF3A1-201ENST00000215793 SEM1Q6ZVN7 128 aa10.46□□□□□ -0.73
SF3A1-201ENST00000215793 MRAPQ8TCY5 172 aa10.46□□□□□ -0.73
SF3A1-201ENST00000215793 HIGD1BQ9P298 99 aa10.46□□□□□ -0.73
SF3A1-201ENST00000215793 TANC1Q9C0D5 1861 aa10.46□□□□□ -0.73
SF3A1-201ENST00000215793 NUPR1O60356 82 aa10.46□□□□□ -0.74
SF3A1-201ENST00000215793 LINC00173Q6ZV60 143 aa10.46□□□□□ -0.74
SF3A1-201ENST00000215793 FBXL19-AS1Q494R0 122 aa10.46□□□□□ -0.74
SF3A1-201ENST00000215793 Q8N7P7 452 aa10.46□□□□□ -0.74
SF3A1-201ENST00000215793 COX7B2Q8TF08 81 aa10.46□□□□□ -0.74
SF3A1-201ENST00000215793 H3BQ85 93 aa10.45□□□□□ -0.74
SF3A1-201ENST00000215793 DEFB105AQ8NG35 78 aa10.45□□□□□ -0.74
SF3A1-201ENST00000215793 ODF3L1Q8IXM7 274 aa10.45□□□□□ -0.74
SF3A1-201ENST00000215793 IGLV10-54A0A075B6I4 117 aa10.44□□□□□ -0.74
SF3A1-201ENST00000215793 MYCNOSP40205 109 aa10.44□□□□□ -0.74
SF3A1-201ENST00000215793 CDPF1Q6NVV7 123 aa10.44□□□□□ -0.74
SF3A1-201ENST00000215793 RPL18AQ02543 176 aaKnown RBP10.44□□□□□ -0.74
SF3A1-201ENST00000215793 ZFP36P26651 326 aaKnown RBP10.43□□□□□ -0.74
SF3A1-201ENST00000215793 TOMM6Q96B49 74 aa10.43□□□□□ -0.74
SF3A1-201ENST00000215793 E9PLD3 99 aa10.43□□□□□ -0.74
SF3A1-201ENST00000215793 IGLV2-14P01704 120 aa10.43□□□□□ -0.74
SF3A1-201ENST00000215793 CXCL5P42830 114 aa10.43□□□□□ -0.74
SF3A1-201ENST00000215793 TMEM258P61165 79 aa10.43□□□□□ -0.74
SF3A1-201ENST00000215793 HHLA3Q9XRX5 114 aa10.43□□□□□ -0.74
SF3A1-201ENST00000215793 RPL39P62891 51 aaKnown RBP10.42□□□□□ -0.74
SF3A1-201ENST00000215793 MRPL36Q9P0J6 103 aaKnown RBP10.42□□□□□ -0.74
SF3A1-201ENST00000215793 NDUFA1O15239 70 aa10.42□□□□□ -0.74
SF3A1-201ENST00000215793 RBM3P98179 157 aaKnown RBP10.42□□□□□ -0.74
SF3A1-201ENST00000215793 PTPN13Q12923 2485 aa10.42□□□□□ -0.74
SF3A1-201ENST00000215793 LINC01620Q4KN68 170 aa10.42□□□□□ -0.74
SF3A1-201ENST00000215793 TEN1Q86WV5 123 aa10.42□□□□□ -0.74
SF3A1-201ENST00000215793 SIRPDQ9H106 197 aa10.42□□□□□ -0.74
SF3A1-201ENST00000215793 RS1O15537 224 aa10.42□□□□□ -0.74
SF3A1-201ENST00000215793 NDUFS5O43920 106 aa10.42□□□□□ -0.74
SF3A1-201ENST00000215793 BAALCQ8WXS3 180 aa10.42□□□□□ -0.74
SF3A1-201ENST00000215793 NUP210Q8TEM1 1887 aaPredicted RBP10.41□□□□□ -0.74
SF3A1-201ENST00000215793 TIRAPP58753 221 aa10.41□□□□□ -0.74
SF3A1-201ENST00000215793 VSIG2Q96IQ7 327 aa10.41□□□□□ -0.74
SF3A1-201ENST00000215793 SORL1Q92673 2214 aa10.41□□□□□ -0.74
SF3A1-201ENST00000215793 E7EUB6 86 aa10.41□□□□□ -0.74
SF3A1-201ENST00000215793 IGHV3-30P01768 117 aa10.41□□□□□ -0.74
SF3A1-201ENST00000215793 IGHV3-33P01772 117 aa10.41□□□□□ -0.74
SF3A1-201ENST00000215793 IGHV3-30-3P0DP02 117 aa10.41□□□□□ -0.74
SF3A1-201ENST00000215793 IGHV3-30-5P0DP03 117 aa10.41□□□□□ -0.74
SF3A1-201ENST00000215793 KMT2EQ8IZD2 1858 aa10.41□□□□□ -0.74
SF3A1-201ENST00000215793 FANCD2OSQ96PS1 177 aa10.41□□□□□ -0.74
SF3A1-201ENST00000215793 C11orf86A6NJI1 115 aa10.4□□□□□ -0.74
SF3A1-201ENST00000215793 IGHV4-4A0A075B6R2 117 aa10.4□□□□□ -0.74
SF3A1-201ENST00000215793 FXYD2P54710 66 aa10.4□□□□□ -0.74
SF3A1-201ENST00000215793 TDRG1Q3Y452 100 aa10.4□□□□□ -0.74
SF3A1-201ENST00000215793 C4orf3Q8WVX3 66 aa10.4□□□□□ -0.75
SF3A1-201ENST00000215793 A0A0J9YX75 114 aa10.39□□□□□ -0.75
SF3A1-201ENST00000215793 C19orf71A6NCJ1 209 aa10.39□□□□□ -0.75
SF3A1-201ENST00000215793 TRBV10-1A0A0K0K1A3 114 aa10.39□□□□□ -0.75
SF3A1-201ENST00000215793 A0A0B4J2C4 111 aa10.39□□□□□ -0.75
SF3A1-201ENST00000215793 A0A1W2PNU3 283 aaPredicted RBP10.39□□□□□ -0.75
SF3A1-201ENST00000215793 JMJD7-PLA2G4BH0Y9G9 81 aa10.39□□□□□ -0.75
SF3A1-201ENST00000215793 OTOGLQ3ZCN5 2332 aa10.39□□□□□ -0.75
SF3A1-201ENST00000215793 NDUFB1O75438 58 aa10.39□□□□□ -0.75
SF3A1-201ENST00000215793 C20orf203Q8NBC4 194 aa10.39□□□□□ -0.75
SF3A1-201ENST00000215793 FREM1Q5H8C1 2179 aa10.39□□□□□ -0.75
SF3A1-201ENST00000215793 MSMPQ1L6U9 139 aa10.38□□□□□ -0.75
SF3A1-201ENST00000215793 CLPSL1A2RUU4 121 aa10.38□□□□□ -0.75
SF3A1-201ENST00000215793 INSL3P51460 131 aa10.38□□□□□ -0.75
SF3A1-201ENST00000215793 TMEM61Q8N0U2 210 aa10.38□□□□□ -0.75
SF3A1-201ENST00000215793 CITED2Q99967 270 aaPredicted RBP10.38□□□□□ -0.75
SF3A1-201ENST00000215793 NCKAP5O14513 1909 aa10.38□□□□□ -0.75
SF3A1-201ENST00000215793 TM2D2Q9BX73 214 aa10.38□□□□□ -0.75
SF3A1-201ENST00000215793 ODF1Q14990 250 aa10.38□□□□□ -0.75
SF3A1-201ENST00000215793 ESM1Q9NQ30 184 aa10.38□□□□□ -0.75
SF3A1-201ENST00000215793 A6NDX4 124 aa10.37□□□□□ -0.75
SF3A1-201ENST00000215793 PRB1P04280 392 aa10.37□□□□□ -0.75
SF3A1-201ENST00000215793 TMEM263Q8WUH6 116 aaKnown RBP10.37□□□□□ -0.75
SF3A1-201ENST00000215793 TTTY13Q9BZ97 58 aa10.37□□□□□ -0.75
SF3A1-201ENST00000215793 C11orf1Q9H5F2 150 aa10.37□□□□□ -0.75
SF3A1-201ENST00000215793 NREPQ16612 68 aa10.37□□□□□ -0.75
SF3A1-201ENST00000215793 NRGNQ92686 78 aa10.37□□□□□ -0.75
SF3A1-201ENST00000215793 DENND4CQ5VZ89 1909 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms