RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 GNRH2O43555 120 aa9.13□□□□□ -0.95
UPF1-208ENST00000600012 TYMSP04818 313 aa9.13□□□□□ -0.95
UPF1-208ENST00000600012 FAM159AQ6UWV7 190 aa9.13□□□□□ -0.95
UPF1-208ENST00000600012 C1orf158Q8N1D5 194 aa9.13□□□□□ -0.95
UPF1-208ENST00000600012 NUP35Q8NFH5 326 aa9.13□□□□□ -0.95
UPF1-208ENST00000600012 CSTL1Q9H114 145 aa9.13□□□□□ -0.95
UPF1-208ENST00000600012 NAT8BQ9UHF3 227 aa9.13□□□□□ -0.95
UPF1-208ENST00000600012 TP53TG3Q9ULZ0 132 aa9.13□□□□□ -0.95
UPF1-208ENST00000600012 MUC4Q99102 2169 aa9.13□□□□□ -0.95
UPF1-208ENST00000600012 IGHV3OR16-12A0A075B7B8 117 aa9.12□□□□□ -0.95
UPF1-208ENST00000600012 H3BVH4 76 aa9.12□□□□□ -0.95
UPF1-208ENST00000600012 IGLC6P0CF74 106 aa9.12□□□□□ -0.95
UPF1-208ENST00000600012 MRPL54Q6P161 138 aaKnown RBP9.12□□□□□ -0.95
UPF1-208ENST00000600012 C20orf144Q9BQM9 153 aa9.12□□□□□ -0.95
UPF1-208ENST00000600012 GFRA4Q9GZZ7 299 aa9.12□□□□□ -0.95
UPF1-208ENST00000600012 C11orf68Q9H3H3 251 aaKnown RBP9.12□□□□□ -0.95
UPF1-208ENST00000600012 TIMM8BQ9Y5J9 83 aaPredicted RBP9.12□□□□□ -0.95
UPF1-208ENST00000600012 MUC21A0A0G2JKD1 596 aa9.11□□□□□ -0.95
UPF1-208ENST00000600012 MUC21A0A140T8X8 626 aa9.11□□□□□ -0.95
UPF1-208ENST00000600012 FAM231BA6NCW3 169 aa9.11□□□□□ -0.95
UPF1-208ENST00000600012 COLCA2A8K830 154 aa9.11□□□□□ -0.95
UPF1-208ENST00000600012 PRM2P04554 102 aa9.11□□□□□ -0.95
UPF1-208ENST00000600012 HTN1P15515 57 aa9.11□□□□□ -0.95
UPF1-208ENST00000600012 ASIPP42127 132 aa9.11□□□□□ -0.95
UPF1-208ENST00000600012 LYZL1Q6UWQ5 148 aa9.11□□□□□ -0.95
UPF1-208ENST00000600012 FER1L6-AS1Q8NA97 138 aa9.11□□□□□ -0.95
UPF1-208ENST00000600012 BTF3L4Q96K17 158 aa9.11□□□□□ -0.95
UPF1-208ENST00000600012 KCNS1Q96KK3 526 aa9.11□□□□□ -0.95
UPF1-208ENST00000600012 LINC01587Q99440 93 aa9.11□□□□□ -0.95
UPF1-208ENST00000600012 PYGO2Q9BRQ0 406 aa9.11□□□□□ -0.95
UPF1-208ENST00000600012 TMEM208Q9BTX3 173 aa9.11□□□□□ -0.95
UPF1-208ENST00000600012 C1QTNF4Q9BXJ3 329 aa9.11□□□□□ -0.95
UPF1-208ENST00000600012 TRBV24-1A0A075B6N3 115 aa9.1□□□□□ -0.95
UPF1-208ENST00000600012 CBY3A6NI87 242 aa9.1□□□□□ -0.95
UPF1-208ENST00000600012 ARMS2P0C7Q2 107 aa9.1□□□□□ -0.95
UPF1-208ENST00000600012 RNASE3P12724 160 aaKnown RBP9.1□□□□□ -0.95
UPF1-208ENST00000600012 S100A4P26447 101 aaKnown RBP9.1□□□□□ -0.95
UPF1-208ENST00000600012 CTRLP40313 264 aa9.1□□□□□ -0.95
UPF1-208ENST00000600012 SSTP61278 116 aa9.1□□□□□ -0.95
UPF1-208ENST00000600012 TDRG1Q3Y452 100 aa9.1□□□□□ -0.95
UPF1-208ENST00000600012 CSNK1G2-AS1Q8NCQ2 148 aa9.1□□□□□ -0.95
UPF1-208ENST00000600012 C11orf45Q8TAV5 145 aa9.1□□□□□ -0.95
UPF1-208ENST00000600012 FAM210BQ96KR6 192 aa9.1□□□□□ -0.95
UPF1-208ENST00000600012 GOLT1BQ9Y3E0 138 aa9.1□□□□□ -0.95
UPF1-208ENST00000600012 TRGV11A0A075B6L2 103 aa9.09□□□□□ -0.95
UPF1-208ENST00000600012 TRAV9-1A0A075B6T8 112 aa9.09□□□□□ -0.95
UPF1-208ENST00000600012 IGHV3-16A0A0C4DH30 117 aa9.09□□□□□ -0.95
UPF1-208ENST00000600012 FOXA3P55318 350 aaPredicted RBP9.09□□□□□ -0.95
UPF1-208ENST00000600012 TCTAP57738 103 aa9.09□□□□□ -0.95
UPF1-208ENST00000600012 NANOS2P60321 138 aaKnown RBP9.09□□□□□ -0.95
UPF1-208ENST00000600012 TMEM256Q8N2U0 113 aa9.09□□□□□ -0.95
UPF1-208ENST00000600012 OR11H2Q8NH07 326 aa9.09□□□□□ -0.95
UPF1-208ENST00000600012 MDFICQ9P1T7 246 aa9.09□□□□□ -0.95
UPF1-208ENST00000600012 SNAI2O43623 268 aa9.08□□□□□ -0.96
UPF1-208ENST00000600012 DNLZQ5SXM8 178 aa9.08□□□□□ -0.96
UPF1-208ENST00000600012 OR10AG1Q8NH19 301 aa9.08□□□□□ -0.96
UPF1-208ENST00000600012 BORCS7Q96B45 105 aa9.08□□□□□ -0.96
UPF1-208ENST00000600012 LINC00467Q9BRT7 94 aa9.08□□□□□ -0.96
UPF1-208ENST00000600012 A0A1B0GUT8 65 aa9.07□□□□□ -0.96
UPF1-208ENST00000600012 A0A1B0GXF2 115 aa9.07□□□□□ -0.96
UPF1-208ENST00000600012 MED14OSP0DP75 135 aa9.07□□□□□ -0.96
UPF1-208ENST00000600012 AZU1P20160 251 aa9.07□□□□□ -0.96
UPF1-208ENST00000600012 RAB5AP20339 215 aa9.07□□□□□ -0.96
UPF1-208ENST00000600012 HERC2O95714 4834 aa9.06□□□□□ -0.96
UPF1-208ENST00000600012 OR5AL1P0C617 328 aa9.06□□□□□ -0.96
UPF1-208ENST00000600012 CAMPP49913 170 aa9.06□□□□□ -0.96
UPF1-208ENST00000600012 ZNF415Q09FC8 603 aa9.06□□□□□ -0.96
UPF1-208ENST00000600012 RIGQ13278 110 aa9.06□□□□□ -0.96
UPF1-208ENST00000600012 ZNF705AQ6ZN79 300 aaPredicted RBP9.06□□□□□ -0.96
UPF1-208ENST00000600012 ATP5L2Q7Z4Y8 100 aa9.06□□□□□ -0.96
UPF1-208ENST00000600012 C9orf85Q96MD7 179 aa9.06□□□□□ -0.96
UPF1-208ENST00000600012 SSBP4Q9BWG4 385 aaPredicted RBP9.06□□□□□ -0.96
UPF1-208ENST00000600012 GSN-AS1Q9NRJ2 163 aa9.06□□□□□ -0.96
UPF1-208ENST00000600012 NACAE9PAV3 2078 aa9.05□□□□□ -0.96
UPF1-208ENST00000600012 F2Z2F3 143 aa9.05□□□□□ -0.96
UPF1-208ENST00000600012 M0R381 172 aa9.05□□□□□ -0.96
UPF1-208ENST00000600012 RPS10P46783 165 aaKnown RBP9.05□□□□□ -0.96
UPF1-208ENST00000600012 RAB4BP61018 213 aa9.05□□□□□ -0.96
UPF1-208ENST00000600012 HBBP68871 147 aa9.05□□□□□ -0.96
UPF1-208ENST00000600012 TWIST1Q15672 202 aa9.05□□□□□ -0.96
UPF1-208ENST00000600012 SPANXN1Q5VSR9 72 aa9.05□□□□□ -0.96
UPF1-208ENST00000600012 C11orf72Q8NBR9 251 aa9.05□□□□□ -0.96
UPF1-208ENST00000600012 CNFNQ9BYD5 112 aa9.05□□□□□ -0.96
UPF1-208ENST00000600012 SCRT2Q9NQ03 307 aa9.05□□□□□ -0.96
UPF1-208ENST00000600012 MSRB1Q9NZV6 116 aa9.05□□□□□ -0.96
UPF1-208ENST00000600012 PHLDA3Q9Y5J5 127 aa9.05□□□□□ -0.96
UPF1-208ENST00000600012 DNAH10Q8IVF4 4471 aa9.04□□□□□ -0.96
UPF1-208ENST00000600012 SNURFLB1AK76 121 aa9.04□□□□□ -0.96
UPF1-208ENST00000600012 DEFB4AO15263 64 aa9.04□□□□□ -0.96
UPF1-208ENST00000600012 NTF3P20783 257 aa9.04□□□□□ -0.96
UPF1-208ENST00000600012 CACNG7P62955 275 aa9.04□□□□□ -0.96
UPF1-208ENST00000600012 TMEM136Q6ZRR5 245 aa9.04□□□□□ -0.96
UPF1-208ENST00000600012 RNASE8Q8TDE3 154 aaKnown RBP9.04□□□□□ -0.96
UPF1-208ENST00000600012 TMEM263Q8WUH6 116 aaKnown RBP9.04□□□□□ -0.96
UPF1-208ENST00000600012 X6R8D5 127 aa9.04□□□□□ -0.96
UPF1-208ENST00000600012 RRN3P1Q2M238 152 aa9.03□□□□□ -0.96
UPF1-208ENST00000600012 ZFP82Q8N141 532 aa9.03□□□□□ -0.96
UPF1-208ENST00000600012 Q8NAQ8 132 aa9.03□□□□□ -0.96
UPF1-208ENST00000600012 APLNQ9ULZ1 77 aa9.03□□□□□ -0.96
UPF1-208ENST00000600012 A0A1B0GW15 77 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms