RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 RPL13AP40429 203 aaKnown RBP9.65□□□□□ -0.86
VPS53-218ENST00000575207 PKIAP61925 76 aa9.65□□□□□ -0.86
VPS53-218ENST00000575207 ID3Q02535 119 aa9.65□□□□□ -0.86
VPS53-218ENST00000575207 TPRXLQ17RH7 258 aa9.65□□□□□ -0.86
VPS53-218ENST00000575207 SMIM8Q96KF7 97 aa9.65□□□□□ -0.86
VPS53-218ENST00000575207 GGACTQ9BVM4 153 aa9.65□□□□□ -0.86
VPS53-218ENST00000575207 USH2AO75445 5202 aa9.64□□□□□ -0.87
VPS53-218ENST00000575207 FAM24AA6NFZ4 105 aa9.64□□□□□ -0.87
VPS53-218ENST00000575207 SSSCA1O60232 199 aa9.64□□□□□ -0.87
VPS53-218ENST00000575207 TSPAN13O95857 204 aa9.64□□□□□ -0.87
VPS53-218ENST00000575207 NBEAP1P0C6P0 100 aa9.64□□□□□ -0.87
VPS53-218ENST00000575207 AKAIN1P0CW23 69 aa9.64□□□□□ -0.87
VPS53-218ENST00000575207 UFSP1Q6NVU6 142 aa9.64□□□□□ -0.87
VPS53-218ENST00000575207 NRARPQ7Z6K4 114 aa9.64□□□□□ -0.87
VPS53-218ENST00000575207 TMED6Q8WW62 240 aa9.64□□□□□ -0.87
VPS53-218ENST00000575207 F6UZH7 168 aa9.63□□□□□ -0.87
VPS53-218ENST00000575207 UBE2D1P51668 147 aa9.63□□□□□ -0.87
VPS53-218ENST00000575207 SSBP1Q04837 148 aaKnown RBP9.63□□□□□ -0.87
VPS53-218ENST00000575207 SPCS2Q15005 226 aa9.63□□□□□ -0.87
VPS53-218ENST00000575207 CLVS1Q8IUQ0 354 aaPredicted RBP9.63□□□□□ -0.87
VPS53-218ENST00000575207 CHCHD5Q9BSY4 110 aa9.63□□□□□ -0.87
VPS53-218ENST00000575207 FCGBPQ9Y6R7 5405 aaPredicted RBP9.63□□□□□ -0.87
VPS53-218ENST00000575207 H0Y9J4 135 aa9.62□□□□□ -0.87
VPS53-218ENST00000575207 LORP23490 312 aaPredicted RBP9.62□□□□□ -0.87
VPS53-218ENST00000575207 ARL16Q0P5N6 197 aa9.62□□□□□ -0.87
VPS53-218ENST00000575207 LGALSLQ3ZCW2 172 aaPredicted RBP9.62□□□□□ -0.87
VPS53-218ENST00000575207 PTTG1O95997 202 aa9.61□□□□□ -0.87
VPS53-218ENST00000575207 MT-ND6P03923 174 aa9.61□□□□□ -0.87
VPS53-218ENST00000575207 RNASE3P12724 160 aaKnown RBP9.61□□□□□ -0.87
VPS53-218ENST00000575207 UBE2D3P61077 147 aa9.61□□□□□ -0.87
VPS53-218ENST00000575207 UBE2D2P62837 147 aa9.61□□□□□ -0.87
VPS53-218ENST00000575207 LCE2CQ5TA81 110 aa9.61□□□□□ -0.87
VPS53-218ENST00000575207 C15orf40Q8WUR7 153 aa9.61□□□□□ -0.87
VPS53-218ENST00000575207 PHYHIPLQ96FC7 376 aa9.61□□□□□ -0.87
VPS53-218ENST00000575207 SLC25A2Q9BXI2 301 aa9.61□□□□□ -0.87
VPS53-218ENST00000575207 JPT2Q9H910 190 aa9.61□□□□□ -0.87
VPS53-218ENST00000575207 RABL2AQ9UBK7 228 aaPredicted RBP9.61□□□□□ -0.87
VPS53-218ENST00000575207 EXTL2Q9UBQ6 330 aa9.61□□□□□ -0.87
VPS53-218ENST00000575207 SCP2D1Q9UJQ7 156 aa9.61□□□□□ -0.87
VPS53-218ENST00000575207 GZMBP10144 247 aa9.6□□□□□ -0.87
VPS53-218ENST00000575207 LSM3P62310 102 aaKnown RBP9.6□□□□□ -0.87
VPS53-218ENST00000575207 RBX1P62877 108 aa9.6□□□□□ -0.87
VPS53-218ENST00000575207 RPL36AP83881 106 aaKnown RBP9.6□□□□□ -0.87
VPS53-218ENST00000575207 PIK3CD-AS1Q5SR53 167 aa9.6□□□□□ -0.87
VPS53-218ENST00000575207 SUN5Q8TC36 379 aa9.6□□□□□ -0.87
VPS53-218ENST00000575207 RPL36ALQ969Q0 106 aaKnown RBP9.6□□□□□ -0.87
VPS53-218ENST00000575207 GFRA4Q9GZZ7 299 aa9.6□□□□□ -0.87
VPS53-218ENST00000575207 C11orf21Q9P2W6 132 aa9.6□□□□□ -0.87
VPS53-218ENST00000575207 RHODO00212 210 aa9.59□□□□□ -0.87
VPS53-218ENST00000575207 RPL29P47914 159 aaKnown RBP9.59□□□□□ -0.87
VPS53-218ENST00000575207 REG3AQ06141 175 aa9.59□□□□□ -0.87
VPS53-218ENST00000575207 C1orf137Q5JT78 98 aa9.59□□□□□ -0.87
VPS53-218ENST00000575207 C15orf56Q8N910 161 aa9.59□□□□□ -0.87
VPS53-218ENST00000575207 KRTAP4-1Q9BYQ7 146 aa9.59□□□□□ -0.87
VPS53-218ENST00000575207 TREM1Q9NP99 234 aa9.59□□□□□ -0.87
VPS53-218ENST00000575207 TRBV7-3A0A075B6L6 115 aa9.58□□□□□ -0.88
VPS53-218ENST00000575207 TRAV8-4A0A0B4J246 113 aa9.58□□□□□ -0.88
VPS53-218ENST00000575207 TSC22D2O75157 780 aa9.58□□□□□ -0.88
VPS53-218ENST00000575207 P01737 135 aa9.58□□□□□ -0.88
VPS53-218ENST00000575207 S100A10P60903 97 aa9.58□□□□□ -0.88
VPS53-218ENST00000575207 TMEM128Q5BJH2 165 aa9.58□□□□□ -0.88
VPS53-218ENST00000575207 TRBV10-1A0A0K0K1A3 114 aa9.57□□□□□ -0.88
VPS53-218ENST00000575207 RANP62826 216 aaKnown RBP9.57□□□□□ -0.88
VPS53-218ENST00000575207 TVP23CQ96ET8 276 aa9.57□□□□□ -0.88
VPS53-218ENST00000575207 FAM167A-AS1Q96KT0 104 aa9.57□□□□□ -0.88
VPS53-218ENST00000575207 RAB5CP51148 216 aa9.56□□□□□ -0.88
VPS53-218ENST00000575207 NEDD8Q15843 81 aa9.56□□□□□ -0.88
VPS53-218ENST00000575207 FAM74A4Q5TZK3 123 aa9.56□□□□□ -0.88
VPS53-218ENST00000575207 FXYD5Q96DB9 178 aa9.56□□□□□ -0.88
VPS53-218ENST00000575207 DIRAS2Q96HU8 199 aa9.56□□□□□ -0.88
VPS53-218ENST00000575207 Q9H521 79 aa9.56□□□□□ -0.88
VPS53-218ENST00000575207 PKIGQ9Y2B9 76 aa9.56□□□□□ -0.88
VPS53-218ENST00000575207 IGLV7-43P04211 117 aa9.55□□□□□ -0.88
VPS53-218ENST00000575207 TAS2R30P59541 319 aa9.55□□□□□ -0.88
VPS53-218ENST00000575207 MRPS10P82664 201 aaKnown RBP9.55□□□□□ -0.88
VPS53-218ENST00000575207 HIGD2BQ4VC39 106 aa9.55□□□□□ -0.88
VPS53-218ENST00000575207 FAM162BQ5T6X4 162 aa9.55□□□□□ -0.88
VPS53-218ENST00000575207 CFAP161Q6P656 301 aa9.55□□□□□ -0.88
VPS53-218ENST00000575207 ARL6IP6Q8N6S5 226 aa9.55□□□□□ -0.88
VPS53-218ENST00000575207 WDR83OSQ9Y284 106 aa9.55□□□□□ -0.88
VPS53-218ENST00000575207 MT1HP80294 61 aa9.54□□□□□ -0.88
VPS53-218ENST00000575207 GCSAMLQ5JQS6 135 aa9.54□□□□□ -0.88
VPS53-218ENST00000575207 MZT2AQ6P582 158 aa9.54□□□□□ -0.88
VPS53-218ENST00000575207 SLIRPQ9GZT3 109 aaKnown RBP9.54□□□□□ -0.88
VPS53-218ENST00000575207 MCUBQ9NWR8 336 aa9.54□□□□□ -0.88
VPS53-218ENST00000575207 RAB26Q9ULW5 256 aa9.54□□□□□ -0.88
VPS53-218ENST00000575207 MACF1Q9UPN3 7388 aaKnown RBP9.53□□□□□ -0.88
VPS53-218ENST00000575207 KRTAP10-6P60371 365 aaPredicted RBP9.53□□□□□ -0.88
VPS53-218ENST00000575207 GAGE6Q13070 117 aa9.53□□□□□ -0.88
VPS53-218ENST00000575207 MIR17HGQ75NE6 70 aa9.53□□□□□ -0.88
VPS53-218ENST00000575207 SMIM4Q8WVI0 70 aa9.53□□□□□ -0.88
VPS53-218ENST00000575207 HYLS1Q96M11 299 aa9.53□□□□□ -0.88
VPS53-218ENST00000575207 BCL7BQ9BQE9 202 aa9.53□□□□□ -0.88
VPS53-218ENST00000575207 MLST8Q9BVC4 326 aa9.53□□□□□ -0.88
VPS53-218ENST00000575207 NMES1Q9C002 83 aa9.53□□□□□ -0.88
VPS53-218ENST00000575207 CARHSP1Q9Y2V2 147 aaKnown RBP9.53□□□□□ -0.88
VPS53-218ENST00000575207 SFT2D2O95562 160 aa9.51□□□□□ -0.89
VPS53-218ENST00000575207 ZNF80P51504 273 aaPredicted RBP9.51□□□□□ -0.89
VPS53-218ENST00000575207 RAB2AP61019 212 aa9.51□□□□□ -0.89
VPS53-218ENST00000575207 BAXQ07812 192 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms