RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 ZNF415Q09FC8 603 aa10.12□□□□□ -0.79
CLK3-209ENST00000562670 PTH2Q96A98 100 aa10.12□□□□□ -0.79
CLK3-209ENST00000562670 LINC01587Q99440 93 aa10.12□□□□□ -0.79
CLK3-209ENST00000562670 TMEM208Q9BTX3 173 aa10.12□□□□□ -0.79
CLK3-209ENST00000562670 NDUFAF3Q9BU61 184 aa10.12□□□□□ -0.79
CLK3-209ENST00000562670 SNURFLB1AK76 121 aa10.11□□□□□ -0.79
CLK3-209ENST00000562670 PHOX2AO14813 284 aa10.11□□□□□ -0.79
CLK3-209ENST00000562670 SPINK4O60575 86 aa10.11□□□□□ -0.79
CLK3-209ENST00000562670 DMRTA1Q5VZB9 504 aa10.11□□□□□ -0.79
CLK3-209ENST00000562670 ZFP82Q8N141 532 aa10.11□□□□□ -0.79
CLK3-209ENST00000562670 C11orf72Q8NBR9 251 aa10.11□□□□□ -0.79
CLK3-209ENST00000562670 OR10AG1Q8NH19 301 aa10.11□□□□□ -0.79
CLK3-209ENST00000562670 IL17DQ8TAD2 202 aa10.11□□□□□ -0.79
CLK3-209ENST00000562670 TMEM263Q8WUH6 116 aaKnown RBP10.11□□□□□ -0.79
CLK3-209ENST00000562670 PHLDA3Q9Y5J5 127 aa10.11□□□□□ -0.79
CLK3-209ENST00000562670 NTF3P20783 257 aa10.1□□□□□ -0.79
CLK3-209ENST00000562670 SPANXN1Q5VSR9 72 aa10.1□□□□□ -0.79
CLK3-209ENST00000562670 RNASE8Q8TDE3 154 aaKnown RBP10.1□□□□□ -0.79
CLK3-209ENST00000562670 SPXQ9BT56 116 aa10.1□□□□□ -0.79
CLK3-209ENST00000562670 TMEM191AQ9H0A3 160 aa10.1□□□□□ -0.79
CLK3-209ENST00000562670 MDFICQ9P1T7 246 aa10.1□□□□□ -0.79
CLK3-209ENST00000562670 SMIM9A6NGZ8 99 aa10.09□□□□□ -0.79
CLK3-209ENST00000562670 FRMD6-AS1P0C7T7 363 aa10.09□□□□□ -0.79
CLK3-209ENST00000562670 TRGC1P0CF51 173 aa10.09□□□□□ -0.79
CLK3-209ENST00000562670 CAMPP49913 170 aa10.09□□□□□ -0.79
CLK3-209ENST00000562670 Q6ZWC4 215 aa10.09□□□□□ -0.79
CLK3-209ENST00000562670 SYT8Q8NBV8 401 aa10.09□□□□□ -0.79
CLK3-209ENST00000562670 C16orf74Q96GX8 76 aa10.09□□□□□ -0.79
CLK3-209ENST00000562670 TRAPPC1Q9Y5R8 145 aa10.09□□□□□ -0.79
CLK3-209ENST00000562670 C1orf196B1AJZ1 125 aa10.08□□□□□ -0.8
CLK3-209ENST00000562670 TRGC2P03986 189 aa10.08□□□□□ -0.8
CLK3-209ENST00000562670 TWIST1Q15672 202 aa10.08□□□□□ -0.8
CLK3-209ENST00000562670 AP1S3Q96PC3 154 aa10.08□□□□□ -0.8
CLK3-209ENST00000562670 MRPL18Q9H0U6 180 aaKnown RBP10.08□□□□□ -0.8
CLK3-209ENST00000562670 RAB4BP61018 213 aa10.07□□□□□ -0.8
CLK3-209ENST00000562670 RRN3P1Q2M238 152 aa10.07□□□□□ -0.8
CLK3-209ENST00000562670 SMIM15Q7Z3B0 74 aa10.07□□□□□ -0.8
CLK3-209ENST00000562670 M0R2P5 195 aa10.06□□□□□ -0.8
CLK3-209ENST00000562670 M0R381 172 aa10.06□□□□□ -0.8
CLK3-209ENST00000562670 SPRY2O43597 315 aa10.06□□□□□ -0.8
CLK3-209ENST00000562670 APCSP02743 223 aa10.06□□□□□ -0.8
CLK3-209ENST00000562670 RAB5BP61020 215 aa10.06□□□□□ -0.8
CLK3-209ENST00000562670 FABP9Q0Z7S8 132 aa10.06□□□□□ -0.8
CLK3-209ENST00000562670 DAZ2Q13117 558 aaKnown RBP10.06□□□□□ -0.8
CLK3-209ENST00000562670 SLAQ13239 276 aa10.06□□□□□ -0.8
CLK3-209ENST00000562670 FAM104BQ5XKR9 115 aa10.06□□□□□ -0.8
CLK3-209ENST00000562670 FRZBQ92765 325 aa10.06□□□□□ -0.8
CLK3-209ENST00000562670 TP53TG1Q9Y2A0 90 aa10.06□□□□□ -0.8
CLK3-209ENST00000562670 IGHV3OR16-12A0A075B7B8 117 aa10.05□□□□□ -0.8
CLK3-209ENST00000562670 MUC21A0A0G2JKD1 596 aa10.05□□□□□ -0.8
CLK3-209ENST00000562670 MUC21A0A140T8X8 626 aa10.05□□□□□ -0.8
CLK3-209ENST00000562670 LGALS9BQ3B8N2 356 aa10.05□□□□□ -0.8
CLK3-209ENST00000562670 RCHY1Q96PM5 261 aa10.05□□□□□ -0.8
CLK3-209ENST00000562670 GSN-AS1Q9NRJ2 163 aa10.05□□□□□ -0.8
CLK3-209ENST00000562670 MSRB1Q9NZV6 116 aa10.05□□□□□ -0.8
CLK3-209ENST00000562670 TIMM8BQ9Y5J9 83 aaPredicted RBP10.05□□□□□ -0.8
CLK3-209ENST00000562670 X6R8D5 127 aa10.05□□□□□ -0.8
CLK3-209ENST00000562670 MGAM2Q2M2H8 2515 aa10.05□□□□□ -0.8
CLK3-209ENST00000562670 PLAC8L1A1L4L8 177 aa10.04□□□□□ -0.8
CLK3-209ENST00000562670 HTN1P15515 57 aa10.04□□□□□ -0.8
CLK3-209ENST00000562670 AZU1P20160 251 aa10.04□□□□□ -0.8
CLK3-209ENST00000562670 POM121L12Q8N7R1 296 aa10.04□□□□□ -0.8
CLK3-209ENST00000562670 RASL10AQ92737 203 aa10.04□□□□□ -0.8
CLK3-209ENST00000562670 RNF183Q96D59 192 aa10.04□□□□□ -0.8
CLK3-209ENST00000562670 DPH3P1Q9H4G8 78 aa10.04□□□□□ -0.8
CLK3-209ENST00000562670 NBEAL1Q6ZS30 2694 aa10.04□□□□□ -0.8
CLK3-209ENST00000562670 PPBPP02775 128 aa10.03□□□□□ -0.8
CLK3-209ENST00000562670 DEFB135Q30KP9 77 aa10.03□□□□□ -0.8
CLK3-209ENST00000562670 ZNF876PQ49A33 203 aa10.03□□□□□ -0.8
CLK3-209ENST00000562670 MUC4Q99102 2169 aa10.03□□□□□ -0.8
CLK3-209ENST00000562670 OVOL2Q9BRP0 275 aa10.03□□□□□ -0.8
CLK3-209ENST00000562670 KIF25-AS1Q9Y6Z4 181 aa10.03□□□□□ -0.8
CLK3-209ENST00000562670 A8MWV9 139 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 HIST1H2BKO60814 126 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 PRM2P04554 102 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 HIST1H2BJP06899 126 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 MIFP14174 115 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 EVI2AP22794 236 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 HIST1H2BOP23527 126 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 HIST1H2BBP33778 126 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 HIST1H2BDP58876 126 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 HIST1H2BCP62807 126 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 HIST2H2BEQ16778 126 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.02□□□□□ -0.81
CLK3-209ENST00000562670 AMN1Q8IY45 258 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 HIST1H2BHQ93079 126 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 RNF185Q96GF1 192 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 HIST1H2BNQ99877 126 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 HIST1H2BMQ99879 126 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 LAMTOR2Q9Y2Q5 125 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 U3KQK5 164 aa10.02□□□□□ -0.81
CLK3-209ENST00000562670 K7EIL1 84 aa10.01□□□□□ -0.81
CLK3-209ENST00000562670 RAB4AP20338 218 aa10.01□□□□□ -0.81
CLK3-209ENST00000562670 MRPL51Q4U2R6 128 aaKnown RBP10.01□□□□□ -0.81
CLK3-209ENST00000562670 MRAP2Q96G30 205 aa10.01□□□□□ -0.81
CLK3-209ENST00000562670 NOTCH1P46531 2555 aa10.01□□□□□ -0.81
CLK3-209ENST00000562670 RHODO00212 210 aa10□□□□□ -0.81
CLK3-209ENST00000562670 SMIM17P0DL12 118 aa10□□□□□ -0.81
CLK3-209ENST00000562670 LINC00315P59091 139 aa10□□□□□ -0.81
CLK3-209ENST00000562670 SSTP61278 116 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms