RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 SPINK4O60575 86 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 MT-ND6P03923 174 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 TYMSP04818 313 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 ARMS2P0C7Q2 107 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 IGHV4-30-4P0DP06 118 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 GZMBP10144 247 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 RAB5AP20339 215 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 KRTAP10-11P60412 298 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 HBBP68871 147 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 ZNF415Q09FC8 603 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 SPANXN1Q5VSR9 72 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 LYZL1Q6UWQ5 148 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 ZNF493Q6ZR52 646 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 GTSF1Q8WW33 167 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 C11orf21Q9P2W6 132 aa4.7□□□□□ -1.66
SPG11-221ENST00000560299 DNAH9Q9NYC9 4486 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 TENM3Q9P273 2699 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 SMIM9A6NGZ8 99 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 H3BVH4 76 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 GNRH2O43555 120 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 SNAI2O43623 268 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 HLA-DQA1P01909 254 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 TRGC1P0CF51 173 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 IGLC6P0CF74 106 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 NHLRC4P0CG21 123 aaPredicted RBP4.69□□□□□ -1.66
SPG11-221ENST00000560299 CTRLP40313 264 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 RPS10P46783 165 aaKnown RBP4.69□□□□□ -1.66
SPG11-221ENST00000560299 RAB4BP61018 213 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 DEFA6Q01524 100 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 TWIST1Q15672 202 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 RRN3P1Q2M238 152 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 MRPL54Q6P161 138 aaKnown RBP4.69□□□□□ -1.66
SPG11-221ENST00000560299 Q6ZQT7 251 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 ZFP82Q8N141 532 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 SYT8Q8NBV8 401 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 SPXQ9BT56 116 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 SSBP4Q9BWG4 385 aaPredicted RBP4.69□□□□□ -1.66
SPG11-221ENST00000560299 GNB1LQ9BYB4 327 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 TIMM8BQ9Y5J9 83 aaPredicted RBP4.69□□□□□ -1.66
SPG11-221ENST00000560299 COL7A1Q02388 2944 aa4.69□□□□□ -1.66
SPG11-221ENST00000560299 IGHV3-16A0A0C4DH30 117 aa4.68□□□□□ -1.66
SPG11-221ENST00000560299 SNURFLB1AK76 121 aa4.68□□□□□ -1.66
SPG11-221ENST00000560299 GIG44P09565 113 aaPredicted RBP4.68□□□□□ -1.66
SPG11-221ENST00000560299 SMIM17P0DL12 118 aa4.68□□□□□ -1.66
SPG11-221ENST00000560299 NTF3P20783 257 aa4.68□□□□□ -1.66
SPG11-221ENST00000560299 CAMPP49913 170 aa4.68□□□□□ -1.66
SPG11-221ENST00000560299 Q6ZWC4 215 aa4.68□□□□□ -1.66
SPG11-221ENST00000560299 C1orf158Q8N1D5 194 aa4.68□□□□□ -1.66
SPG11-221ENST00000560299 CSNK1G2-AS1Q8NCQ2 148 aa4.68□□□□□ -1.66
SPG11-221ENST00000560299 TMEM263Q8WUH6 116 aaKnown RBP4.68□□□□□ -1.66
SPG11-221ENST00000560299 FRZBQ92765 325 aa4.68□□□□□ -1.66
SPG11-221ENST00000560299 C16orf74Q96GX8 76 aa4.68□□□□□ -1.66
SPG11-221ENST00000560299 YPEL4Q96NS1 127 aa4.68□□□□□ -1.66
SPG11-221ENST00000560299 RCHY1Q96PM5 261 aa4.68□□□□□ -1.66
SPG11-221ENST00000560299 B9D2Q9BPU9 175 aa4.68□□□□□ -1.66
SPG11-221ENST00000560299 CNFNQ9BYD5 112 aa4.68□□□□□ -1.66
SPG11-221ENST00000560299 TP53TG3Q9ULZ0 132 aa4.68□□□□□ -1.66
SPG11-221ENST00000560299 TRAPPC1Q9Y5R8 145 aa4.68□□□□□ -1.66
SPG11-221ENST00000560299 IGHV4-4A0A075B6R2 117 aa4.67□□□□□ -1.66
SPG11-221ENST00000560299 A0A1B0GXF2 115 aa4.67□□□□□ -1.66
SPG11-221ENST00000560299 C1orf196B1AJZ1 125 aa4.67□□□□□ -1.66
SPG11-221ENST00000560299 M0R2P5 195 aa4.67□□□□□ -1.66
SPG11-221ENST00000560299 M0R381 172 aa4.67□□□□□ -1.66
SPG11-221ENST00000560299 RBMY1A1P0DJD3 496 aaKnown RBP4.67□□□□□ -1.66
SPG11-221ENST00000560299 RBMY1CP0DJD4 496 aa4.67□□□□□ -1.66
SPG11-221ENST00000560299 RNASE3P12724 160 aaKnown RBP4.67□□□□□ -1.66
SPG11-221ENST00000560299 SSTP61278 116 aa4.67□□□□□ -1.66
SPG11-221ENST00000560299 FABP9Q0Z7S8 132 aa4.67□□□□□ -1.66
SPG11-221ENST00000560299 RBMY1FQ15415 496 aaKnown RBP4.67□□□□□ -1.66
SPG11-221ENST00000560299 DEFB121Q5J5C9 76 aa4.67□□□□□ -1.66
SPG11-221ENST00000560299 PIK3CD-AS1Q5SR53 167 aa4.67□□□□□ -1.66
SPG11-221ENST00000560299 ZNF705AQ6ZN79 300 aaPredicted RBP4.67□□□□□ -1.66
SPG11-221ENST00000560299 OR10AG1Q8NH19 301 aa4.67□□□□□ -1.66
SPG11-221ENST00000560299 PTH2Q96A98 100 aa4.67□□□□□ -1.66
SPG11-221ENST00000560299 C9orf85Q96MD7 179 aa4.67□□□□□ -1.66
SPG11-221ENST00000560299 NDUFAF3Q9BU61 184 aa4.67□□□□□ -1.66
SPG11-221ENST00000560299 SCRT2Q9NQ03 307 aa4.67□□□□□ -1.66
SPG11-221ENST00000560299 MUC21A0A0G2JKD1 596 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 MUC21A0A140T8X8 626 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 K7EIL1 84 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 PAX4O43316 350 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 SPRY2O43597 315 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 APCSP02743 223 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 FRMD6-AS1P0C7T7 363 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 MIFP14174 115 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 RAB5BP61020 215 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 DEFB135Q30KP9 77 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 LGALS9BQ3B8N2 356 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 ZNF876PQ49A33 203 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 TMEM136Q6ZRR5 245 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 ZNF575Q86XF7 245 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 OR11H2Q8NH07 326 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 RNASE8Q8TDE3 154 aaKnown RBP4.66□□□□□ -1.66
SPG11-221ENST00000560299 RNF183Q96D59 192 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 AP1S3Q96PC3 154 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 TMEM191AQ9H0A3 160 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 MRPL18Q9H0U6 180 aaKnown RBP4.66□□□□□ -1.66
SPG11-221ENST00000560299 GSN-AS1Q9NRJ2 163 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 MDFICQ9P1T7 246 aa4.66□□□□□ -1.66
SPG11-221ENST00000560299 TP53TG1Q9Y2A0 90 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms