RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 TEN1Q86WV5 123 aa2.46□□□□□ -2.02
PRPF39-210ENST00000556718 OR5AS1Q8N127 324 aa2.46□□□□□ -2.02
PRPF39-210ENST00000556718 OR11H6Q8NGC7 330 aa2.46□□□□□ -2.02
PRPF39-210ENST00000556718 ZNRF2Q8NHG8 242 aa2.46□□□□□ -2.02
PRPF39-210ENST00000556718 AMELYQ99218 206 aa2.46□□□□□ -2.02
PRPF39-210ENST00000556718 SHANK2-AS3Q9BTD1 123 aa2.46□□□□□ -2.02
PRPF39-210ENST00000556718 NPCDR1Q9BY65 106 aa2.46□□□□□ -2.02
PRPF39-210ENST00000556718 IMUPQ9GZP8 106 aa2.46□□□□□ -2.02
PRPF39-210ENST00000556718 PRTFDC1Q9NRG1 225 aa2.46□□□□□ -2.02
PRPF39-210ENST00000556718 HIGD1AQ9Y241 93 aa2.46□□□□□ -2.02
PRPF39-210ENST00000556718 HLA-DRB4X5D2U9 266 aa2.46□□□□□ -2.02
PRPF39-210ENST00000556718 MCM3APO60318 1980 aa2.46□□□□□ -2.02
PRPF39-210ENST00000556718 BRWD3Q6RI45 1802 aa2.46□□□□□ -2.02
PRPF39-210ENST00000556718 ZNF831Q5JPB2 1677 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 C15orf65H3BRN8 121 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 K7EM74 188 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 ACYP1P07311 99 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 SCTP09683 121 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 C8orf88P0DMB2 117 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 FKBP2P26885 142 aaKnown RBP2.45□□□□□ -2.02
PRPF39-210ENST00000556718 GLRXP35754 106 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 RPS27P42677 84 aaKnown RBP2.45□□□□□ -2.02
PRPF39-210ENST00000556718 HSPE1P61604 102 aaKnown RBP2.45□□□□□ -2.02
PRPF39-210ENST00000556718 C12orf74Q32Q52 190 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 KPRPQ5T749 579 aaPredicted RBP2.45□□□□□ -2.02
PRPF39-210ENST00000556718 C9orf153Q5TBE3 101 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 HES3Q5TGS1 186 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 COPS9Q8WXC6 57 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 BORCS8Q96FH0 119 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 C20orf78Q9BR46 151 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 PRADC1Q9BSG0 188 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 OR2H1Q9GZK4 316 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 NHP2Q9NX24 153 aaKnown RBP2.45□□□□□ -2.02
PRPF39-210ENST00000556718 IDI2-AS1Q9NZ38 188 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 ICOSQ9Y6W8 199 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 MYO16Q9Y6X6 1858 aa2.45□□□□□ -2.02
PRPF39-210ENST00000556718 PLXND1Q9Y4D7 1925 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 COL4A1P02462 1669 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 CCDC88CQ9P219 2028 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 UBR3Q6ZT12 1888 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 PLXNA1Q9UIW2 1896 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 IGKV1D-42A0A075B6H8 117 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 TMED7-TICAM2A0A0A6YYA0 188 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 TRAV2A0A0B4J234 112 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 A0A1W2PQD3 144 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 TCRBV4S1A1TA0A5B7 111 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 F5H768 121 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 UQCRQO14949 82 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 NPFFO15130 113 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 TRACP01848 142 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 IGHG2P01859 326 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 ARL14EPLP0DKL9 152 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 CTLA4P16410 223 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 EDDM3BP56851 147 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 RBM11P57052 281 aaKnown RBP2.44□□□□□ -2.02
PRPF39-210ENST00000556718 TNFAIP6P98066 277 aaPredicted RBP2.44□□□□□ -2.02
PRPF39-210ENST00000556718 PLGLB1Q02325 96 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 ZNF818PQ6ZRF7 136 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 C3orf22Q8N5N4 141 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 OR1L8Q8NGR8 309 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 MGST2Q99735 147 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 NAA38Q9BRA0 125 aaKnown RBP2.44□□□□□ -2.02
PRPF39-210ENST00000556718 Q9Y3F1 56 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 LHFPL6Q9Y693 200 aa2.44□□□□□ -2.02
PRPF39-210ENST00000556718 SBF1O95248 1867 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 KIF26AQ9ULI4 1882 aaPredicted RBP2.43□□□□□ -2.02
PRPF39-210ENST00000556718 LOC107984156A0A0G2JMH3 177 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 CCDC179H3BU77 68 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 DPM2O94777 84 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 NPYP01303 97 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 IGKV1D-33P01593 117 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 IGKV1-33P01594 117 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 IGLV3-19P01714 112 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 HBDP02042 147 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 LGALS1P09382 135 aaKnown RBP2.43□□□□□ -2.02
PRPF39-210ENST00000556718 FGF6P10767 208 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 FCER1GP30273 86 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 FAM53BQ14153 422 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 FXYD3Q14802 87 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 CST6Q15828 149 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 DEFB134Q4QY38 66 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 PRR9Q5T870 116 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 CFAP126Q5VTH2 177 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 AMTNQ6UX39 209 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 SCGB1D4Q6XE38 83 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 Q6ZQT7 251 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 FAM19A5Q7Z5A7 132 aaPredicted RBP2.43□□□□□ -2.02
PRPF39-210ENST00000556718 FAM19A3Q7Z5A8 133 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 ARL17AQ8IVW1 177 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 IFI27L1Q96BM0 104 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 AICDAQ9GZX7 198 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 RNASE7Q9H1E1 156 aaKnown RBP2.43□□□□□ -2.02
PRPF39-210ENST00000556718 ZNF492Q9P255 531 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 AMMECR1Q9Y4X0 333 aaPredicted RBP2.43□□□□□ -2.02
PRPF39-210ENST00000556718 TIMM8BQ9Y5J9 83 aaPredicted RBP2.43□□□□□ -2.02
PRPF39-210ENST00000556718 MPC1Q9Y5U8 109 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 CASP8AP2Q9UKL3 1982 aa2.43□□□□□ -2.02
PRPF39-210ENST00000556718 XIRP1Q702N8 1843 aaKnown RBP2.42□□□□□ -2.02
PRPF39-210ENST00000556718 LCTP09848 1927 aa2.42□□□□□ -2.02
PRPF39-210ENST00000556718 ADAMTSL1Q8N6G6 1762 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms