RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 MUC21Q5SSG8 566 aa6.88□□□□□ -1.31
LIMA1-211ENST00000552338 LINC00612Q8N6U2 182 aa6.88□□□□□ -1.31
LIMA1-211ENST00000552338 RASL10AQ92737 203 aa6.88□□□□□ -1.31
LIMA1-211ENST00000552338 TMEM208Q9BTX3 173 aa6.88□□□□□ -1.31
LIMA1-211ENST00000552338 C11orf68Q9H3H3 251 aaKnown RBP6.88□□□□□ -1.31
LIMA1-211ENST00000552338 NACAE9PAV3 2078 aa6.88□□□□□ -1.31
LIMA1-211ENST00000552338 SPINK4O60575 86 aa6.87□□□□□ -1.31
LIMA1-211ENST00000552338 ARMS2P0C7Q2 107 aa6.87□□□□□ -1.31
LIMA1-211ENST00000552338 ZNF415Q09FC8 603 aa6.87□□□□□ -1.31
LIMA1-211ENST00000552338 ATRAIDQ6UW56 229 aa6.87□□□□□ -1.31
LIMA1-211ENST00000552338 FER1L6-AS1Q8NA97 138 aa6.87□□□□□ -1.31
LIMA1-211ENST00000552338 YPEL4Q96NS1 127 aa6.87□□□□□ -1.31
LIMA1-211ENST00000552338 MDFICQ9P1T7 246 aa6.87□□□□□ -1.31
LIMA1-211ENST00000552338 NAT8BQ9UHF3 227 aa6.87□□□□□ -1.31
LIMA1-211ENST00000552338 TIMM8BQ9Y5J9 83 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-211ENST00000552338 LYRM9A8MSI8 78 aa6.86□□□□□ -1.31
LIMA1-211ENST00000552338 HIGD1CA8MV81 97 aa6.86□□□□□ -1.31
LIMA1-211ENST00000552338 M0R2P5 195 aa6.86□□□□□ -1.31
LIMA1-211ENST00000552338 CIDEAO60543 219 aa6.86□□□□□ -1.31
LIMA1-211ENST00000552338 CACNG7P62955 275 aa6.86□□□□□ -1.31
LIMA1-211ENST00000552338 ATP5L2Q7Z4Y8 100 aa6.86□□□□□ -1.31
LIMA1-211ENST00000552338 GATD1Q8NB37 220 aa6.86□□□□□ -1.31
LIMA1-211ENST00000552338 NUP35Q8NFH5 326 aa6.86□□□□□ -1.31
LIMA1-211ENST00000552338 BTF3L4Q96K17 158 aa6.86□□□□□ -1.31
LIMA1-211ENST00000552338 RPS10P5Q9NQ39 176 aa6.86□□□□□ -1.31
LIMA1-211ENST00000552338 TRBV24-1A0A075B6N3 115 aa6.85□□□□□ -1.31
LIMA1-211ENST00000552338 IGHV3OR16-12A0A075B7B8 117 aa6.85□□□□□ -1.31
LIMA1-211ENST00000552338 TEX48A0A1B0GUV7 120 aa6.85□□□□□ -1.31
LIMA1-211ENST00000552338 A0A1B0GW15 77 aa6.85□□□□□ -1.31
LIMA1-211ENST00000552338 GRIFINA4D1Z8 144 aa6.85□□□□□ -1.31
LIMA1-211ENST00000552338 PRM2P04554 102 aa6.85□□□□□ -1.31
LIMA1-211ENST00000552338 S100A4P26447 101 aaKnown RBP6.85□□□□□ -1.31
LIMA1-211ENST00000552338 RASL11AQ6T310 242 aa6.85□□□□□ -1.31
LIMA1-211ENST00000552338 LYZL1Q6UWQ5 148 aa6.85□□□□□ -1.31
LIMA1-211ENST00000552338 ZMAT4Q9H898 229 aa6.85□□□□□ -1.31
LIMA1-211ENST00000552338 GSN-AS1Q9NRJ2 163 aa6.85□□□□□ -1.31
LIMA1-211ENST00000552338 NAGKQ9UJ70 344 aa6.85□□□□□ -1.31
LIMA1-211ENST00000552338 IGHV4-28A0A0C4DH34 117 aa6.84□□□□□ -1.31
LIMA1-211ENST00000552338 A0A1B0GUT8 65 aa6.84□□□□□ -1.31
LIMA1-211ENST00000552338 A0A1B0GXF2 115 aa6.84□□□□□ -1.31
LIMA1-211ENST00000552338 SNURFLB1AK76 121 aa6.84□□□□□ -1.31
LIMA1-211ENST00000552338 GZMBP10144 247 aa6.84□□□□□ -1.31
LIMA1-211ENST00000552338 ELOBQ15370 118 aa6.84□□□□□ -1.31
LIMA1-211ENST00000552338 KCNIP4Q6PIL6 250 aa6.84□□□□□ -1.31
LIMA1-211ENST00000552338 ZFP82Q8N141 532 aa6.84□□□□□ -1.31
LIMA1-211ENST00000552338 SMCO4Q9NRQ5 59 aa6.84□□□□□ -1.31
LIMA1-211ENST00000552338 DKK2Q9UBU2 259 aa6.84□□□□□ -1.31
LIMA1-211ENST00000552338 DNAH9Q9NYC9 4486 aa6.84□□□□□ -1.31
LIMA1-211ENST00000552338 HUWE1Q7Z6Z7 4374 aaKnown RBP6.83□□□□□ -1.32
LIMA1-211ENST00000552338 TMSB15BA0A087X1C1 80 aa6.83□□□□□ -1.32
LIMA1-211ENST00000552338 H3BVH4 76 aa6.83□□□□□ -1.32
LIMA1-211ENST00000552338 NTF3P20783 257 aa6.83□□□□□ -1.32
LIMA1-211ENST00000552338 S100PP25815 95 aa6.83□□□□□ -1.32
LIMA1-211ENST00000552338 COX19Q49B96 90 aa6.83□□□□□ -1.32
LIMA1-211ENST00000552338 UFSP1Q6NVU6 142 aa6.83□□□□□ -1.32
LIMA1-211ENST00000552338 POM121L12Q8N7R1 296 aa6.83□□□□□ -1.32
LIMA1-211ENST00000552338 OR10AG1Q8NH19 301 aa6.83□□□□□ -1.32
LIMA1-211ENST00000552338 FRZBQ92765 325 aa6.83□□□□□ -1.32
LIMA1-211ENST00000552338 PHLDA3Q9Y5J5 127 aa6.83□□□□□ -1.32
LIMA1-211ENST00000552338 A8MWV9 139 aa6.82□□□□□ -1.32
LIMA1-211ENST00000552338 RS1O15537 224 aa6.82□□□□□ -1.32
LIMA1-211ENST00000552338 HTN1P15515 57 aa6.82□□□□□ -1.32
LIMA1-211ENST00000552338 FAM3BP58499 235 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-211ENST00000552338 RIGQ13278 110 aa6.82□□□□□ -1.32
LIMA1-211ENST00000552338 ZNF876PQ49A33 203 aa6.82□□□□□ -1.32
LIMA1-211ENST00000552338 SYT8Q8NBV8 401 aa6.82□□□□□ -1.32
LIMA1-211ENST00000552338 PGLYRP4Q96LB8 373 aa6.82□□□□□ -1.32
LIMA1-211ENST00000552338 RETNQ9HD89 108 aa6.82□□□□□ -1.32
LIMA1-211ENST00000552338 NOP10Q9NPE3 64 aaKnown RBP6.82□□□□□ -1.32
LIMA1-211ENST00000552338 KIF25-AS1Q9Y6Z4 181 aa6.82□□□□□ -1.32
LIMA1-211ENST00000552338 TRAV4A0A0B4J268 109 aa6.81□□□□□ -1.32
LIMA1-211ENST00000552338 S100A8P05109 93 aa6.81□□□□□ -1.32
LIMA1-211ENST00000552338 CRYGDP07320 174 aa6.81□□□□□ -1.32
LIMA1-211ENST00000552338 TRGC1P0CF51 173 aa6.81□□□□□ -1.32
LIMA1-211ENST00000552338 SPART-AS1P0CW21 52 aa6.81□□□□□ -1.32
LIMA1-211ENST00000552338 LINC00315P59091 139 aa6.81□□□□□ -1.32
LIMA1-211ENST00000552338 SPANXN1Q5VSR9 72 aa6.81□□□□□ -1.32
LIMA1-211ENST00000552338 ZFP2Q6ZN57 461 aa6.81□□□□□ -1.32
LIMA1-211ENST00000552338 TMEM191AQ9H0A3 160 aa6.81□□□□□ -1.32
LIMA1-211ENST00000552338 EDA2RQ9HAV5 297 aa6.81□□□□□ -1.32
LIMA1-211ENST00000552338 PRKDCP78527 4128 aaKnown RBP6.81□□□□□ -1.32
LIMA1-211ENST00000552338 HBBP68871 147 aa6.8□□□□□ -1.32
LIMA1-211ENST00000552338 FAM222AQ5U5X8 452 aa6.8□□□□□ -1.32
LIMA1-211ENST00000552338 Q6ZTI0 123 aa6.8□□□□□ -1.32
LIMA1-211ENST00000552338 BORCS7Q96B45 105 aa6.8□□□□□ -1.32
LIMA1-211ENST00000552338 GNB1LQ9BYB4 327 aa6.8□□□□□ -1.32
LIMA1-211ENST00000552338 MSRB1Q9NZV6 116 aa6.8□□□□□ -1.32
LIMA1-211ENST00000552338 COLCA2A8K830 154 aa6.79□□□□□ -1.32
LIMA1-211ENST00000552338 RHODO00212 210 aa6.79□□□□□ -1.32
LIMA1-211ENST00000552338 CFAP126Q5VTH2 177 aa6.79□□□□□ -1.32
LIMA1-211ENST00000552338 DPH3P1Q9H4G8 78 aa6.79□□□□□ -1.32
LIMA1-211ENST00000552338 PGPEP1Q9NXJ5 209 aa6.79□□□□□ -1.32
LIMA1-211ENST00000552338 TRGV1A0A0A0MS02 117 aa6.78□□□□□ -1.32
LIMA1-211ENST00000552338 A0A0J9YWU9 116 aa6.78□□□□□ -1.32
LIMA1-211ENST00000552338 M0R381 172 aa6.78□□□□□ -1.32
LIMA1-211ENST00000552338 MT-ND6P03923 174 aa6.78□□□□□ -1.32
LIMA1-211ENST00000552338 EVI2AP22794 236 aa6.78□□□□□ -1.32
LIMA1-211ENST00000552338 TWIST1Q15672 202 aa6.78□□□□□ -1.32
LIMA1-211ENST00000552338 C12orf74Q32Q52 190 aa6.78□□□□□ -1.32
LIMA1-211ENST00000552338 LCE2CQ5TA81 110 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms