RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 CBLN2Q8IUK8 224 aa9.37□□□□□ -0.91
CHD3-210ENST00000479080 FER1L6-AS1Q8NA97 138 aa9.37□□□□□ -0.91
CHD3-210ENST00000479080 C16orf74Q96GX8 76 aa9.37□□□□□ -0.91
CHD3-210ENST00000479080 GFRA4Q9GZZ7 299 aa9.37□□□□□ -0.91
CHD3-210ENST00000479080 CELA1Q9UNI1 258 aa9.37□□□□□ -0.91
CHD3-210ENST00000479080 HIGD1CA8MV81 97 aa9.36□□□□□ -0.91
CHD3-210ENST00000479080 OR5AL1P0C617 328 aa9.36□□□□□ -0.91
CHD3-210ENST00000479080 MIFP14174 115 aa9.36□□□□□ -0.91
CHD3-210ENST00000479080 ZNF493Q6ZR52 646 aa9.36□□□□□ -0.91
CHD3-210ENST00000479080 PGLYRP4Q96LB8 373 aa9.36□□□□□ -0.91
CHD3-210ENST00000479080 CNFNQ9BYD5 112 aa9.36□□□□□ -0.91
CHD3-210ENST00000479080 TMEM242Q9NWH2 141 aa9.36□□□□□ -0.91
CHD3-210ENST00000479080 TIMM8BQ9Y5J9 83 aaPredicted RBP9.36□□□□□ -0.91
CHD3-210ENST00000479080 FAM231BA6NCW3 169 aa9.35□□□□□ -0.91
CHD3-210ENST00000479080 TMEM88Q6PEY1 159 aa9.35□□□□□ -0.91
CHD3-210ENST00000479080 LINC00612Q8N6U2 182 aa9.35□□□□□ -0.91
CHD3-210ENST00000479080 MUC4Q99102 2169 aa9.35□□□□□ -0.91
CHD3-210ENST00000479080 JPT2Q9H910 190 aa9.35□□□□□ -0.91
CHD3-210ENST00000479080 MRPL16Q9NX20 251 aaKnown RBP9.35□□□□□ -0.91
CHD3-210ENST00000479080 MSRB1Q9NZV6 116 aa9.35□□□□□ -0.91
CHD3-210ENST00000479080 A0A1B0GXF2 115 aa9.34□□□□□ -0.91
CHD3-210ENST00000479080 SPINK4O60575 86 aa9.34□□□□□ -0.91
CHD3-210ENST00000479080 S100A4P26447 101 aaKnown RBP9.34□□□□□ -0.91
CHD3-210ENST00000479080 EMP1P54849 157 aa9.34□□□□□ -0.91
CHD3-210ENST00000479080 DAZ2Q13117 558 aaKnown RBP9.34□□□□□ -0.91
CHD3-210ENST00000479080 DMRTA1Q5VZB9 504 aa9.34□□□□□ -0.91
CHD3-210ENST00000479080 Q6ZTI0 123 aa9.34□□□□□ -0.91
CHD3-210ENST00000479080 TPPP3Q9BW30 176 aa9.34□□□□□ -0.91
CHD3-210ENST00000479080 C11orf68Q9H3H3 251 aaKnown RBP9.34□□□□□ -0.91
CHD3-210ENST00000479080 NOP10Q9NPE3 64 aaKnown RBP9.34□□□□□ -0.91
CHD3-210ENST00000479080 NAT8BQ9UHF3 227 aa9.34□□□□□ -0.91
CHD3-210ENST00000479080 COL7A1Q02388 2944 aa9.33□□□□□ -0.92
CHD3-210ENST00000479080 IGHV4-4A0A075B6R2 117 aa9.33□□□□□ -0.92
CHD3-210ENST00000479080 A0A1W2PPQ1 181 aa9.33□□□□□ -0.92
CHD3-210ENST00000479080 XKRY2A2RUG3 117 aa9.33□□□□□ -0.92
CHD3-210ENST00000479080 POM121L12Q8N7R1 296 aa9.33□□□□□ -0.92
CHD3-210ENST00000479080 PTH2Q96A98 100 aa9.33□□□□□ -0.92
CHD3-210ENST00000479080 IMMP2LQ96T52 175 aa9.33□□□□□ -0.92
CHD3-210ENST00000479080 URGCP-MRPS24S4R325 110 aa9.33□□□□□ -0.92
CHD3-210ENST00000479080 A0A0J9YWU9 116 aa9.32□□□□□ -0.92
CHD3-210ENST00000479080 M0R2P5 195 aa9.32□□□□□ -0.92
CHD3-210ENST00000479080 ELOBQ15370 118 aa9.32□□□□□ -0.92
CHD3-210ENST00000479080 FAM222AQ5U5X8 452 aa9.32□□□□□ -0.92
CHD3-210ENST00000479080 SPXQ9BT56 116 aa9.32□□□□□ -0.92
CHD3-210ENST00000479080 DKK2Q9UBU2 259 aa9.32□□□□□ -0.92
CHD3-210ENST00000479080 DYNC2H1Q8NCM8 4307 aaKnown RBP9.32□□□□□ -0.92
CHD3-210ENST00000479080 TGIF2-C20orf24A0A0A6YYL0 155 aa9.31□□□□□ -0.92
CHD3-210ENST00000479080 SNURFLB1AK76 121 aa9.31□□□□□ -0.92
CHD3-210ENST00000479080 M0R381 172 aa9.31□□□□□ -0.92
CHD3-210ENST00000479080 SSTP61278 116 aa9.31□□□□□ -0.92
CHD3-210ENST00000479080 MRPL54Q6P161 138 aaKnown RBP9.31□□□□□ -0.92
CHD3-210ENST00000479080 RASL10AQ92737 203 aa9.31□□□□□ -0.92
CHD3-210ENST00000479080 SAMD10Q9BYL1 202 aa9.31□□□□□ -0.92
CHD3-210ENST00000479080 KIF25-AS1Q9Y6Z4 181 aa9.31□□□□□ -0.92
CHD3-210ENST00000479080 TRGV1A0A0A0MS02 117 aa9.3□□□□□ -0.92
CHD3-210ENST00000479080 A0A1B0GUT8 65 aa9.3□□□□□ -0.92
CHD3-210ENST00000479080 CXorf65A6NEN9 183 aa9.3□□□□□ -0.92
CHD3-210ENST00000479080 F2Z2F3 143 aa9.3□□□□□ -0.92
CHD3-210ENST00000479080 NTF3P20783 257 aa9.3□□□□□ -0.92
CHD3-210ENST00000479080 LINC00315P59091 139 aa9.3□□□□□ -0.92
CHD3-210ENST00000479080 ZNF876PQ49A33 203 aa9.3□□□□□ -0.92
CHD3-210ENST00000479080 UFSP1Q6NVU6 142 aa9.3□□□□□ -0.92
CHD3-210ENST00000479080 WDR73Q6P4I2 378 aa9.3□□□□□ -0.92
CHD3-210ENST00000479080 GATD1Q8NB37 220 aa9.3□□□□□ -0.92
CHD3-210ENST00000479080 PHLDA3Q9Y5J5 127 aa9.3□□□□□ -0.92
CHD3-210ENST00000479080 DNAH7Q8WXX0 4024 aa9.3□□□□□ -0.92
CHD3-210ENST00000479080 GAGE12BA1L429 117 aa9.29□□□□□ -0.92
CHD3-210ENST00000479080 RS1O15537 224 aa9.29□□□□□ -0.92
CHD3-210ENST00000479080 GAGE7O76087 117 aa9.29□□□□□ -0.92
CHD3-210ENST00000479080 CRYGDP07320 174 aa9.29□□□□□ -0.92
CHD3-210ENST00000479080 GAGE12FP0CL80 117 aa9.29□□□□□ -0.92
CHD3-210ENST00000479080 GAGE12GP0CL81 117 aa9.29□□□□□ -0.92
CHD3-210ENST00000479080 GAGE12IP0CL82 117 aa9.29□□□□□ -0.92
CHD3-210ENST00000479080 CACNG7P62955 275 aa9.29□□□□□ -0.92
CHD3-210ENST00000479080 SPANXN1Q5VSR9 72 aa9.29□□□□□ -0.92
CHD3-210ENST00000479080 ZFP82Q8N141 532 aa9.29□□□□□ -0.92
CHD3-210ENST00000479080 ZMAT4Q9H898 229 aa9.29□□□□□ -0.92
CHD3-210ENST00000479080 SMCO4Q9NRQ5 59 aa9.29□□□□□ -0.92
CHD3-210ENST00000479080 TRBV24-1A0A075B6N3 115 aa9.28□□□□□ -0.92
CHD3-210ENST00000479080 TRAV9-1A0A075B6T8 112 aa9.28□□□□□ -0.92
CHD3-210ENST00000479080 LYRM9A8MSI8 78 aa9.28□□□□□ -0.92
CHD3-210ENST00000479080 C12orf74Q32Q52 190 aa9.28□□□□□ -0.92
CHD3-210ENST00000479080 LGALS9BQ3B8N2 356 aa9.28□□□□□ -0.92
CHD3-210ENST00000479080 CFAP126Q5VTH2 177 aa9.28□□□□□ -0.92
CHD3-210ENST00000479080 KCNIP4Q6PIL6 250 aa9.28□□□□□ -0.92
CHD3-210ENST00000479080 EDA2RQ9HAV5 297 aa9.28□□□□□ -0.92
CHD3-210ENST00000479080 TGP01266 2768 aa9.28□□□□□ -0.92
CHD3-210ENST00000479080 COLCA2A8K830 154 aa9.27□□□□□ -0.93
CHD3-210ENST00000479080 NHLRC4P0CG21 123 aaPredicted RBP9.27□□□□□ -0.93
CHD3-210ENST00000479080 EVI2AP22794 236 aa9.27□□□□□ -0.93
CHD3-210ENST00000479080 TWIST1Q15672 202 aa9.27□□□□□ -0.93
CHD3-210ENST00000479080 PIK3CD-AS1Q5SR53 167 aa9.27□□□□□ -0.93
CHD3-210ENST00000479080 TMEM136Q6ZRR5 245 aa9.27□□□□□ -0.93
CHD3-210ENST00000479080 ATP5L2Q7Z4Y8 100 aa9.27□□□□□ -0.93
CHD3-210ENST00000479080 RNF185Q96GF1 192 aa9.27□□□□□ -0.93
CHD3-210ENST00000479080 ZNF479Q96JC4 524 aa9.27□□□□□ -0.93
CHD3-210ENST00000479080 BTF3L4Q96K17 158 aa9.27□□□□□ -0.93
CHD3-210ENST00000479080 C18orf15Q96N68 181 aa9.27□□□□□ -0.93
CHD3-210ENST00000479080 STARD9Q9P2P6 4700 aa9.26□□□□□ -0.93
CHD3-210ENST00000479080 A0A087WWL8 130 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms