RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 PRSS29PA6NIE9 313 aa7.41□□□□□ -1.22
CD44-206ENST00000415148 RPL32P62910 135 aaKnown RBP7.41□□□□□ -1.22
CD44-206ENST00000415148 SFTA2Q6UW10 78 aa7.41□□□□□ -1.22
CD44-206ENST00000415148 HIST1H4GQ99525 98 aa7.41□□□□□ -1.22
CD44-206ENST00000415148 IGHV1-69DA0A0B4J2H0 117 aa7.4□□□□□ -1.22
CD44-206ENST00000415148 GAGE12HA6NDE8 117 aa7.4□□□□□ -1.22
CD44-206ENST00000415148 OR11H12B2RN74 326 aa7.4□□□□□ -1.22
CD44-206ENST00000415148 IGHV1-69P01742 117 aa7.4□□□□□ -1.22
CD44-206ENST00000415148 MORN3Q6PF18 240 aaPredicted RBP7.4□□□□□ -1.22
CD44-206ENST00000415148 OR11H1Q8NG94 326 aa7.4□□□□□ -1.22
CD44-206ENST00000415148 OR11H2Q8NH07 326 aa7.4□□□□□ -1.22
CD44-206ENST00000415148 RPL39LQ96EH5 51 aaKnown RBP7.4□□□□□ -1.22
CD44-206ENST00000415148 SPOCK3Q9BQ16 436 aa7.4□□□□□ -1.22
CD44-206ENST00000415148 CACNA1AO00555 2505 aa7.4□□□□□ -1.23
CD44-206ENST00000415148 NXPH4O95158 308 aa7.4□□□□□ -1.23
CD44-206ENST00000415148 ANXA2RQ3ZCQ2 193 aa7.4□□□□□ -1.23
CD44-206ENST00000415148 CYSLTR1Q9Y271 337 aa7.4□□□□□ -1.23
CD44-206ENST00000415148 RAXQ9Y2V3 346 aa7.4□□□□□ -1.23
CD44-206ENST00000415148 RNF223E7ERA6 249 aa7.39□□□□□ -1.23
CD44-206ENST00000415148 UNQ9165/PRO28630Q6UXU0 137 aa7.39□□□□□ -1.23
CD44-206ENST00000415148 TMEM219Q86XT9 240 aa7.39□□□□□ -1.23
CD44-206ENST00000415148 C14orf178Q8N769 122 aaPredicted RBP7.39□□□□□ -1.23
CD44-206ENST00000415148 PLEKHB2Q96CS7 222 aa7.39□□□□□ -1.23
CD44-206ENST00000415148 MAP1AP78559 2803 aaPredicted RBP7.39□□□□□ -1.23
CD44-206ENST00000415148 IGHV4OR15-8A0A075B7B6 117 aa7.39□□□□□ -1.23
CD44-206ENST00000415148 A0A087WW49 117 aa7.39□□□□□ -1.23
CD44-206ENST00000415148 IGHG2P01859 326 aa7.39□□□□□ -1.23
CD44-206ENST00000415148 RRN3P1Q2M238 152 aa7.39□□□□□ -1.23
CD44-206ENST00000415148 PAPPA-AS1Q5QFB9 102 aa7.39□□□□□ -1.23
CD44-206ENST00000415148 C2orf66Q6UXQ4 117 aa7.39□□□□□ -1.23
CD44-206ENST00000415148 BAALCQ8WXS3 180 aa7.39□□□□□ -1.23
CD44-206ENST00000415148 SIGMAR1Q99720 223 aa7.39□□□□□ -1.23
CD44-206ENST00000415148 PTPRQQ9UMZ3 2332 aa7.38□□□□□ -1.23
CD44-206ENST00000415148 LGALS1P09382 135 aaKnown RBP7.38□□□□□ -1.23
CD44-206ENST00000415148 RNASE3P12724 160 aaKnown RBP7.38□□□□□ -1.23
CD44-206ENST00000415148 SMCPP49901 116 aaPredicted RBP7.38□□□□□ -1.23
CD44-206ENST00000415148 CD300EQ496F6 205 aaPredicted RBP7.38□□□□□ -1.23
CD44-206ENST00000415148 WFDC12Q8WWY7 111 aa7.38□□□□□ -1.23
CD44-206ENST00000415148 LINC00527Q9UJ94 153 aa7.38□□□□□ -1.23
CD44-206ENST00000415148 MUC4Q99102 2169 aa7.38□□□□□ -1.23
CD44-206ENST00000415148 RNASE4P34096 147 aaKnown RBP7.38□□□□□ -1.23
CD44-206ENST00000415148 J3QR89 54 aa7.37□□□□□ -1.23
CD44-206ENST00000415148 EMP1P54849 157 aa7.37□□□□□ -1.23
CD44-206ENST00000415148 KLHL30-AS1Q8NEE0 82 aa7.37□□□□□ -1.23
CD44-206ENST00000415148 KIF25-AS1Q9Y6Z4 181 aa7.37□□□□□ -1.23
CD44-206ENST00000415148 TMEM238LA0A1B0GVL6 79 aa7.37□□□□□ -1.23
CD44-206ENST00000415148 A6NJY4 79 aa7.37□□□□□ -1.23
CD44-206ENST00000415148 K7EMT4 169 aa7.37□□□□□ -1.23
CD44-206ENST00000415148 HOXA3O43365 443 aaPredicted RBP7.37□□□□□ -1.23
CD44-206ENST00000415148 GNRH2O43555 120 aa7.37□□□□□ -1.23
CD44-206ENST00000415148 TRBV12-3P01733 135 aa7.37□□□□□ -1.23
CD44-206ENST00000415148 MGPP08493 103 aa7.37□□□□□ -1.23
CD44-206ENST00000415148 FHL3Q13643 280 aa7.37□□□□□ -1.23
CD44-206ENST00000415148 GAGE13Q4V321 117 aa7.37□□□□□ -1.23
CD44-206ENST00000415148 NCOR2Q9Y618 2525 aa7.36□□□□□ -1.23
CD44-206ENST00000415148 A6NDX4 124 aa7.36□□□□□ -1.23
CD44-206ENST00000415148 KLLNB2CW77 178 aa7.36□□□□□ -1.23
CD44-206ENST00000415148 ZFP2Q6ZN57 461 aa7.36□□□□□ -1.23
CD44-206ENST00000415148 PTH2Q96A98 100 aa7.36□□□□□ -1.23
CD44-206ENST00000415148 SPATA25Q9BR10 227 aa7.36□□□□□ -1.23
CD44-206ENST00000415148 RHPN1-AS1Q9BWJ2 59 aa7.36□□□□□ -1.23
CD44-206ENST00000415148 IGLV1-40P01703 118 aa7.35□□□□□ -1.23
CD44-206ENST00000415148 ID1P41134 155 aa7.35□□□□□ -1.23
CD44-206ENST00000415148 LINC00315P59091 139 aa7.35□□□□□ -1.23
CD44-206ENST00000415148 RPL11P62913 178 aaKnown RBP7.35□□□□□ -1.23
CD44-206ENST00000415148 NFE4Q86UQ8 179 aa7.35□□□□□ -1.23
CD44-206ENST00000415148 TMEM141Q96I45 108 aa7.35□□□□□ -1.23
CD44-206ENST00000415148 PRADC1Q9BSG0 188 aa7.35□□□□□ -1.23
CD44-206ENST00000415148 PGPEP1Q9NXJ5 209 aa7.35□□□□□ -1.23
CD44-206ENST00000415148 CRYBG3Q68DQ2 2970 aa7.35□□□□□ -1.23
CD44-206ENST00000415148 F6UB75 175 aa7.35□□□□□ -1.23
CD44-206ENST00000415148 VCYO14598 125 aa7.35□□□□□ -1.23
CD44-206ENST00000415148 CIDEAO60543 219 aa7.35□□□□□ -1.23
CD44-206ENST00000415148 IGHV4-39P01824 125 aa7.35□□□□□ -1.23
CD44-206ENST00000415148 SCGB1A1P11684 91 aa7.35□□□□□ -1.23
CD44-206ENST00000415148 POLR2KP53803 58 aaKnown RBP7.35□□□□□ -1.23
CD44-206ENST00000415148 DAZ1Q9NQZ3 744 aaKnown RBP7.35□□□□□ -1.23
CD44-206ENST00000415148 IGF2RP11717 2491 aa7.35□□□□□ -1.23
CD44-206ENST00000415148 COL6A6A6NMZ7 2263 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 IGIPA6NJ69 53 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 CRYGDP07320 174 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 COX6B1P14854 86 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 HERVK_113P61574 105 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 SCGB2A2Q13296 93 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 FAM159AQ6UWV7 190 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 PIMREGQ9BSJ6 248 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 ZNF580Q9UK33 172 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 ZNF815PA8K554 130 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 NDUFS8O00217 210 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 DUSP14O95147 198 aaKnown RBP7.34□□□□□ -1.23
CD44-206ENST00000415148 TSHBP01222 138 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 PF4V1P10720 104 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 PMVKQ15126 192 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 BRD3OSQ6XYD6 125 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 CLUHP3Q96NS8 147 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 ODF3Q96PU9 254 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 TIMM17AQ99595 171 aa7.34□□□□□ -1.23
CD44-206ENST00000415148 SPTAN1Q13813 2472 aaKnown RBP7.34□□□□□ -1.23
CD44-206ENST00000415148 IGHV3OR16-10A0A075B7F0 116 aa7.33□□□□□ -1.24
CD44-206ENST00000415148 TRBV6-5A0A0K0K1A5 114 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms