RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 F2Z2F3 143 aa12.99□□□□□ -0.33
SDC1-203ENST00000403076 S100PP25815 95 aa12.99□□□□□ -0.33
SDC1-203ENST00000403076 FAM3BP58499 235 aaPredicted RBP12.99□□□□□ -0.33
SDC1-203ENST00000403076 KCNIP4Q6PIL6 250 aa12.99□□□□□ -0.33
SDC1-203ENST00000403076 Q8NAQ8 132 aa12.99□□□□□ -0.33
SDC1-203ENST00000403076 BORCS7Q96B45 105 aa12.99□□□□□ -0.33
SDC1-203ENST00000403076 C9orf85Q96MD7 179 aa12.99□□□□□ -0.33
SDC1-203ENST00000403076 NOP10Q9NPE3 64 aaKnown RBP12.99□□□□□ -0.33
SDC1-203ENST00000403076 OR5AL1P0C617 328 aa12.98□□□□□ -0.33
SDC1-203ENST00000403076 SPANXN1Q5VSR9 72 aa12.98□□□□□ -0.33
SDC1-203ENST00000403076 NUP35Q8NFH5 326 aa12.98□□□□□ -0.33
SDC1-203ENST00000403076 IMMP2LQ96T52 175 aa12.98□□□□□ -0.33
SDC1-203ENST00000403076 SSBP4Q9BWG4 385 aaPredicted RBP12.98□□□□□ -0.33
SDC1-203ENST00000403076 SNAI2O43623 268 aa12.98□□□□□ -0.33
SDC1-203ENST00000403076 FOXA3P55318 350 aaPredicted RBP12.98□□□□□ -0.33
SDC1-203ENST00000403076 URGCP-MRPS24S4R325 110 aa12.98□□□□□ -0.33
SDC1-203ENST00000403076 PLAC8L1A1L4L8 177 aa12.97□□□□□ -0.33
SDC1-203ENST00000403076 CXorf65A6NEN9 183 aa12.97□□□□□ -0.33
SDC1-203ENST00000403076 M0R381 172 aa12.97□□□□□ -0.33
SDC1-203ENST00000403076 SPINK4O60575 86 aa12.97□□□□□ -0.33
SDC1-203ENST00000403076 NHLRC4P0CG21 123 aaPredicted RBP12.97□□□□□ -0.33
SDC1-203ENST00000403076 CTRLP40313 264 aa12.97□□□□□ -0.33
SDC1-203ENST00000403076 SYT8Q8NBV8 401 aa12.97□□□□□ -0.33
SDC1-203ENST00000403076 OR10AG1Q8NH19 301 aa12.97□□□□□ -0.33
SDC1-203ENST00000403076 SCRT2Q9NQ03 307 aa12.97□□□□□ -0.33
SDC1-203ENST00000403076 TRGV1A0A0A0MS02 117 aa12.96□□□□□ -0.33
SDC1-203ENST00000403076 M0R2P5 195 aa12.96□□□□□ -0.33
SDC1-203ENST00000403076 DAZ2Q13117 558 aaKnown RBP12.96□□□□□ -0.33
SDC1-203ENST00000403076 ZNF876PQ49A33 203 aa12.96□□□□□ -0.33
SDC1-203ENST00000403076 ZFP82Q8N141 532 aa12.96□□□□□ -0.33
SDC1-203ENST00000403076 MRPL16Q9NX20 251 aaKnown RBP12.96□□□□□ -0.33
SDC1-203ENST00000403076 A0A1B0GUT8 65 aa12.95□□□□□ -0.34
SDC1-203ENST00000403076 CACNG7P62955 275 aa12.95□□□□□ -0.34
SDC1-203ENST00000403076 IL17DQ8TAD2 202 aa12.95□□□□□ -0.34
SDC1-203ENST00000403076 SMCO4Q9NRQ5 59 aa12.95□□□□□ -0.34
SDC1-203ENST00000403076 TWIST1Q15672 202 aa12.94□□□□□ -0.34
SDC1-203ENST00000403076 TMEM88Q6PEY1 159 aa12.94□□□□□ -0.34
SDC1-203ENST00000403076 MEGF8Q7Z7M0 2845 aa12.94□□□□□ -0.34
SDC1-203ENST00000403076 A0A0J9YWU9 116 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 NTF3P20783 257 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 RIGQ13278 110 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 FAM222AQ5U5X8 452 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 DMRTA1Q5VZB9 504 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 WDR73Q6P4I2 378 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 Q6ZTI0 123 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 CBLN2Q8IUK8 224 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 C11orf68Q9H3H3 251 aaKnown RBP12.93□□□□□ -0.34
SDC1-203ENST00000403076 GAGE12BA1L429 117 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 LYRM9A8MSI8 78 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 SCO1O75880 301 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 GAGE7O76087 117 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 GAGE12FP0CL80 117 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 GAGE12GP0CL81 117 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 GAGE12IP0CL82 117 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 SPART-AS1P0CW21 52 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 LGALS9BQ3B8N2 356 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 MRPL54Q6P161 138 aaKnown RBP12.93□□□□□ -0.34
SDC1-203ENST00000403076 BTF3L4Q96K17 158 aa12.93□□□□□ -0.34
SDC1-203ENST00000403076 DEFB130BP0DP73 79 aa12.92□□□□□ -0.34
SDC1-203ENST00000403076 DEFB130AP0DP74 79 aa12.92□□□□□ -0.34
SDC1-203ENST00000403076 DKK2Q9UBU2 259 aa12.92□□□□□ -0.34
SDC1-203ENST00000403076 MUC4Q99102 2169 aa12.91□□□□□ -0.34
SDC1-203ENST00000403076 TRAV9-1A0A075B6T8 112 aa12.91□□□□□ -0.34
SDC1-203ENST00000403076 RASL10AQ92737 203 aa12.91□□□□□ -0.34
SDC1-203ENST00000403076 PTH2Q96A98 100 aa12.91□□□□□ -0.34
SDC1-203ENST00000403076 CNFNQ9BYD5 112 aa12.91□□□□□ -0.34
SDC1-203ENST00000403076 MSRB1Q9NZV6 116 aa12.91□□□□□ -0.34
SDC1-203ENST00000403076 TRGV2A0A075B6R0 118 aa12.9□□□□□ -0.34
SDC1-203ENST00000403076 IGHV4-4A0A075B6R2 117 aa12.9□□□□□ -0.34
SDC1-203ENST00000403076 TEX48A0A1B0GUV7 120 aa12.9□□□□□ -0.34
SDC1-203ENST00000403076 NXPH4O95158 308 aa12.9□□□□□ -0.34
SDC1-203ENST00000403076 CAMPP49913 170 aa12.9□□□□□ -0.34
SDC1-203ENST00000403076 DAD1P61803 113 aa12.9□□□□□ -0.34
SDC1-203ENST00000403076 SMIM15Q7Z3B0 74 aa12.9□□□□□ -0.34
SDC1-203ENST00000403076 CELA1Q9UNI1 258 aa12.9□□□□□ -0.34
SDC1-203ENST00000403076 TRGC1P0CF51 173 aa12.89□□□□□ -0.35
SDC1-203ENST00000403076 JPT2Q9H910 190 aa12.89□□□□□ -0.35
SDC1-203ENST00000403076 S100A8P05109 93 aa12.88□□□□□ -0.35
SDC1-203ENST00000403076 HBBP68871 147 aa12.88□□□□□ -0.35
SDC1-203ENST00000403076 ELOBQ15370 118 aa12.88□□□□□ -0.35
SDC1-203ENST00000403076 PIK3CD-AS1Q5SR53 167 aa12.88□□□□□ -0.35
SDC1-203ENST00000403076 ATP5L2Q7Z4Y8 100 aa12.88□□□□□ -0.35
SDC1-203ENST00000403076 AP1S3Q96PC3 154 aa12.88□□□□□ -0.35
SDC1-203ENST00000403076 TGIF2-C20orf24A0A0A6YYL0 155 aa12.88□□□□□ -0.35
SDC1-203ENST00000403076 A0A1B0GW15 77 aa12.88□□□□□ -0.35
SDC1-203ENST00000403076 A8MWV9 139 aa12.88□□□□□ -0.35
SDC1-203ENST00000403076 SMIM17P0DL12 118 aa12.88□□□□□ -0.35
SDC1-203ENST00000403076 RAB4BP61018 213 aa12.88□□□□□ -0.35
SDC1-203ENST00000403076 NDUFAF3Q9BU61 184 aa12.88□□□□□ -0.35
SDC1-203ENST00000403076 U3KQK5 164 aa12.88□□□□□ -0.35
SDC1-203ENST00000403076 TENM3Q9P273 2699 aa12.87□□□□□ -0.35
SDC1-203ENST00000403076 FAM74A4Q5TZK3 123 aa12.87□□□□□ -0.35
SDC1-203ENST00000403076 C14orf178Q8N769 122 aaPredicted RBP12.87□□□□□ -0.35
SDC1-203ENST00000403076 OR4C5Q8NGB2 326 aa12.87□□□□□ -0.35
SDC1-203ENST00000403076 TRBV24-1A0A075B6N3 115 aa12.86□□□□□ -0.35
SDC1-203ENST00000403076 A0A087WWL8 130 aa12.86□□□□□ -0.35
SDC1-203ENST00000403076 IGHV3-53P01767 116 aa12.86□□□□□ -0.35
SDC1-203ENST00000403076 EVI2AP22794 236 aa12.86□□□□□ -0.35
SDC1-203ENST00000403076 LINC00612Q8N6U2 182 aa12.86□□□□□ -0.35
SDC1-203ENST00000403076 C11orf45Q8TAV5 145 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms