RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 SYNJ2BPP57105 145 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 MBD6Q96DN6 1003 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 U3KQE9 123 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 MGAMO43451 1857 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 BRWD3Q6RI45 1802 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 IGHV4-28A0A0C4DH34 117 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 E9PLN8 166 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 C2orf66Q6UXQ4 117 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 ANKHD1Q8IWZ3 2542 aaKnown RBP4.19□□□□□ -1.74
SCN1A-201ENST00000303395 I3L3M4 83 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 B3GALT5-AS1P59052 145 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 ZNF726P1Q15940 193 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 A0A1B0GW54 56 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 NDUFA4O00483 81 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 IGHV1-8P0DP01 117 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 NREPQ16612 68 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 LINC01620Q4KN68 170 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 SIGLEC9Q9Y336 463 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 IGHV3OR16-8A0A075B7F1 116 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 PRB1P04280 392 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 AMTNQ6UX39 209 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 C8orf86Q6ZUL3 223 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 GTSF1Q8WW33 167 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 CFHR4Q92496 578 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 TSSC4Q9Y5U2 329 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-201ENST00000303395 U3KQK5 164 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 RBX1P62877 108 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 PTPRBP23467 1997 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 FOXI1Q12951 378 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 RSPO4Q2I0M5 234 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-201ENST00000303395 C12orf74Q32Q52 190 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 CDCP2Q5VXM1 449 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 PIP4P2Q8N4L2 257 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 FXYD5Q96DB9 178 aa4.19□□□□□ -1.74
SCN1A-201ENST00000303395 IGKV1D-43A0A0B4J1Z2 117 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 C15orf32Q32M92 178 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 C14orf177Q52M58 125 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 LYZL1Q6UWQ5 148 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 ZNF580Q9UK33 172 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 A4D1N5 150 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 IGFBP6P24592 240 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-201ENST00000303395 ZNF826PQ6ZT77 177 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 SLC25A45Q8N413 288 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 NAA38Q9BRA0 125 aaKnown RBP4.18□□□□□ -1.74
SCN1A-201ENST00000303395 DAZ1Q9NQZ3 744 aaKnown RBP4.18□□□□□ -1.74
SCN1A-201ENST00000303395 UBE2D4Q9Y2X8 147 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 B4DSR2 109 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 NDUFS7O75251 213 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 Q8N1Y9 231 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 TRBV10-2A0A0K0K1G8 114 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 C19orf71A6NCJ1 209 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 C2orf70A6NJV1 201 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 C15orf65H3BRN8 121 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 SH2D1AO60880 128 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 BAALC-AS2P0C853 105 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 TCF15Q12870 199 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 MRGPRG-AS1Q2M3A8 158 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 IGKV1OR2-108A0A075B7D4 117 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 IGKV1-6A0A0C4DH72 117 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 SEM1Q6ZVN7 128 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 Q9HAA7 133 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 NUP210LQ5VU65 1888 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 RPL39P5Q59GN2 51 aa4.18□□□□□ -1.74
SCN1A-201ENST00000303395 TINCRA0A1B0GVN0 87 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 FXYD7P58549 80 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 LINC01356Q8N9X3 169 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 WFDC12Q8WWY7 111 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 LINC00479Q96M42 142 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 J3QQQ9 107 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 BRI3O95415 125 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 J3QLI3 93 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 C16orf47Q6ZP98 133 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-201ENST00000303395 IGHV4-4A0A075B6R2 117 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 MORN5Q5VZ52 161 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 FGFBP3Q8TAT2 258 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 PMS2P5A8MQ11 134 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 GP9P14770 177 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 ZFP2Q6ZN57 461 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 Q6ZRM9 215 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 C5orf63A6NC05 138 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 PSMB8P28062 276 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 UBE2D1P51668 147 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 EFNA4P52798 201 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 SERP2Q8N6R1 65 aa4.17□□□□□ -1.74
SCN1A-201ENST00000303395 IGHV4OR15-8A0A075B7B6 117 aa4.16□□□□□ -1.74
SCN1A-201ENST00000303395 A0A087WW49 117 aa4.16□□□□□ -1.74
SCN1A-201ENST00000303395 NPBQ8NG41 125 aa4.16□□□□□ -1.74
SCN1A-201ENST00000303395 K7EMT4 169 aa4.16□□□□□ -1.74
SCN1A-201ENST00000303395 RPS28P62857 69 aaKnown RBP4.16□□□□□ -1.74
SCN1A-201ENST00000303395 NXPH4O95158 308 aa4.16□□□□□ -1.74
SCN1A-201ENST00000303395 MSRB2Q9Y3D2 182 aa4.16□□□□□ -1.74
SCN1A-201ENST00000303395 TRBV10-1A0A0K0K1A3 114 aa4.16□□□□□ -1.74
SCN1A-201ENST00000303395 CENPVL3A0A0U1RRI6 287 aa4.16□□□□□ -1.74
SCN1A-201ENST00000303395 PPIFP30405 207 aaKnown RBP4.16□□□□□ -1.74
SCN1A-201ENST00000303395 PLA2G2FQ9BZM2 168 aa4.16□□□□□ -1.74
SCN1A-201ENST00000303395 BPESC1Q9GZL8 116 aa4.16□□□□□ -1.74
SCN1A-201ENST00000303395 IGKV1-39P01597 117 aa4.16□□□□□ -1.74
SCN1A-201ENST00000303395 IGKV1D-39P04432 117 aa4.16□□□□□ -1.74
SCN1A-201ENST00000303395 FGF6P10767 208 aa4.16□□□□□ -1.74
SCN1A-201ENST00000303395 COLQQ9Y215 455 aaPredicted RBP4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms