RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 IGHV1OR15-1A0A075B7D0 117 aa14.93□□□□□ -0.02
CLN3-245ENST00000636172 GATCO43716 136 aaKnown RBP14.93□□□□□ -0.02
CLN3-245ENST00000636172 SNAPINO95295 136 aa14.93□□□□□ -0.02
CLN3-245ENST00000636172 TDRG1Q3Y452 100 aa14.93□□□□□ -0.02
CLN3-245ENST00000636172 ZNF705AQ6ZN79 300 aaPredicted RBP14.93□□□□□ -0.02
CLN3-245ENST00000636172 ZNF575Q86XF7 245 aa14.93□□□□□ -0.02
CLN3-245ENST00000636172 OR2D3Q8NGH3 330 aa14.93□□□□□ -0.02
CLN3-245ENST00000636172 PYGO2Q9BRQ0 406 aa14.93□□□□□ -0.02
CLN3-245ENST00000636172 V9GYV3 84 aa14.93□□□□□ -0.02
CLN3-245ENST00000636172 TMSB15BA0A087X1C1 80 aa14.92□□□□□ -0.02
CLN3-245ENST00000636172 C7orf77A4D0Y5 90 aa14.92□□□□□ -0.02
CLN3-245ENST00000636172 TMEM189A5PLL7 270 aa14.92□□□□□ -0.02
CLN3-245ENST00000636172 ZNF705GA8MUZ8 300 aaPredicted RBP14.92□□□□□ -0.02
CLN3-245ENST00000636172 RHEBQ15382 184 aa14.92□□□□□ -0.02
CLN3-245ENST00000636172 FAM159AQ6UWV7 190 aa14.92□□□□□ -0.02
CLN3-245ENST00000636172 Q6ZWC4 215 aa14.92□□□□□ -0.02
CLN3-245ENST00000636172 MT-ND4LP03901 98 aa14.92□□□□□ -0.02
CLN3-245ENST00000636172 PRM2P04554 102 aa14.92□□□□□ -0.02
CLN3-245ENST00000636172 MRAPQ8TCY5 172 aa14.92□□□□□ -0.02
CLN3-245ENST00000636172 LINC00467Q9BRT7 94 aa14.92□□□□□ -0.02
CLN3-245ENST00000636172 HTN1P15515 57 aa14.91□□□□□ -0.02
CLN3-245ENST00000636172 S100A1P23297 94 aa14.91□□□□□ -0.02
CLN3-245ENST00000636172 ATRAIDQ6UW56 229 aa14.91□□□□□ -0.02
CLN3-245ENST00000636172 KCNS1Q96KK3 526 aa14.91□□□□□ -0.02
CLN3-245ENST00000636172 RCHY1Q96PM5 261 aa14.91□□□□□ -0.02
CLN3-245ENST00000636172 TP53TG3Q9ULZ0 132 aa14.91□□□□□ -0.02
CLN3-245ENST00000636172 GNRH2O43555 120 aa14.9□□□□□ -0.02
CLN3-245ENST00000636172 TYMSP04818 313 aa14.9□□□□□ -0.02
CLN3-245ENST00000636172 CT83Q5H943 113 aa14.9□□□□□ -0.02
CLN3-245ENST00000636172 RNF183Q96D59 192 aa14.9□□□□□ -0.02
CLN3-245ENST00000636172 ANAPC16Q96DE5 110 aa14.9□□□□□ -0.02
CLN3-245ENST00000636172 PPP1R2P9O14990 202 aa14.89□□□□□ -0.03
CLN3-245ENST00000636172 GZMBP10144 247 aa14.89□□□□□ -0.03
CLN3-245ENST00000636172 SBSPONQ8IVN8 264 aa14.89□□□□□ -0.03
CLN3-245ENST00000636172 RPS10P5Q9NQ39 176 aa14.89□□□□□ -0.03
CLN3-245ENST00000636172 A0A087WWC5 75 aa14.88□□□□□ -0.03
CLN3-245ENST00000636172 GRIFINA4D1Z8 144 aa14.88□□□□□ -0.03
CLN3-245ENST00000636172 CBY3A6NI87 242 aa14.88□□□□□ -0.03
CLN3-245ENST00000636172 DEFA6Q01524 100 aa14.88□□□□□ -0.03
CLN3-245ENST00000636172 X6R8D5 127 aa14.88□□□□□ -0.03
CLN3-245ENST00000636172 AZU1P20160 251 aa14.87□□□□□ -0.03
CLN3-245ENST00000636172 RPS20P60866 119 aaKnown RBP14.87□□□□□ -0.03
CLN3-245ENST00000636172 CTDSP1Q9GZU7 261 aa14.87□□□□□ -0.03
CLN3-245ENST00000636172 RETNQ9HD89 108 aa14.87□□□□□ -0.03
CLN3-245ENST00000636172 A8MWL6 223 aa14.87□□□□□ -0.03
CLN3-245ENST00000636172 SPRY2O43597 315 aa14.87□□□□□ -0.03
CLN3-245ENST00000636172 CXCL1P09341 107 aa14.87□□□□□ -0.03
CLN3-245ENST00000636172 TSKUQ8WUA8 353 aa14.87□□□□□ -0.03
CLN3-245ENST00000636172 TP53TG1Q9Y2A0 90 aa14.87□□□□□ -0.03
CLN3-245ENST00000636172 TRGV11A0A075B6L2 103 aa14.86□□□□□ -0.03
CLN3-245ENST00000636172 IGHV3-16A0A0C4DH30 117 aa14.86□□□□□ -0.03
CLN3-245ENST00000636172 XKRY2A2RUG3 117 aa14.86□□□□□ -0.03
CLN3-245ENST00000636172 OR11H2Q8NH07 326 aa14.86□□□□□ -0.03
CLN3-245ENST00000636172 GTSF1Q8WW33 167 aa14.86□□□□□ -0.03
CLN3-245ENST00000636172 NEU1Q99519 415 aa14.86□□□□□ -0.03
CLN3-245ENST00000636172 OVOL2Q9BRP0 275 aa14.86□□□□□ -0.03
CLN3-245ENST00000636172 MDFICQ9P1T7 246 aa14.86□□□□□ -0.03
CLN3-245ENST00000636172 ASIPP42127 132 aa14.85□□□□□ -0.03
CLN3-245ENST00000636172 DNLZQ5SXM8 178 aa14.85□□□□□ -0.03
CLN3-245ENST00000636172 RNASE8Q8TDE3 154 aaKnown RBP14.85□□□□□ -0.03
CLN3-245ENST00000636172 TMEM242Q9NWH2 141 aa14.85□□□□□ -0.03
CLN3-245ENST00000636172 RNASE3P12724 160 aaKnown RBP14.84□□□□□ -0.03
CLN3-245ENST00000636172 TCL1AP56279 114 aa14.84□□□□□ -0.03
CLN3-245ENST00000636172 RRN3P1Q2M238 152 aa14.84□□□□□ -0.03
CLN3-245ENST00000636172 C11orf72Q8NBR9 251 aa14.84□□□□□ -0.03
CLN3-245ENST00000636172 IL36BQ9NZH7 164 aa14.84□□□□□ -0.03
CLN3-245ENST00000636172 TENM3Q9P273 2699 aa14.83□□□□□ -0.04
CLN3-245ENST00000636172 SMIM27A0A1W2PRY6 76 aa14.83□□□□□ -0.04
CLN3-245ENST00000636172 H3BVH4 76 aa14.83□□□□□ -0.04
CLN3-245ENST00000636172 IGLC6P0CF74 106 aa14.83□□□□□ -0.04
CLN3-245ENST00000636172 TMEM263Q8WUH6 116 aaKnown RBP14.83□□□□□ -0.04
CLN3-245ENST00000636172 TM2D3Q9BRN9 247 aa14.83□□□□□ -0.04
CLN3-245ENST00000636172 GFRA4Q9GZZ7 299 aa14.83□□□□□ -0.04
CLN3-245ENST00000636172 SMIM9A6NGZ8 99 aa14.82□□□□□ -0.04
CLN3-245ENST00000636172 S100A4P26447 101 aaKnown RBP14.82□□□□□ -0.04
CLN3-245ENST00000636172 GSN-AS1Q9NRJ2 163 aa14.82□□□□□ -0.04
CLN3-245ENST00000636172 FAM231BA6NCW3 169 aa14.82□□□□□ -0.04
CLN3-245ENST00000636172 ARMS2P0C7Q2 107 aa14.82□□□□□ -0.04
CLN3-245ENST00000636172 FER1L6-AS1Q8NA97 138 aa14.82□□□□□ -0.04
CLN3-245ENST00000636172 C16orf74Q96GX8 76 aa14.82□□□□□ -0.04
CLN3-245ENST00000636172 C9orf85Q96MD7 179 aa14.82□□□□□ -0.04
CLN3-245ENST00000636172 B9D2Q9BPU9 175 aa14.82□□□□□ -0.04
CLN3-245ENST00000636172 PLAC8L1A1L4L8 177 aa14.81□□□□□ -0.04
CLN3-245ENST00000636172 HIGD1CA8MV81 97 aa14.81□□□□□ -0.04
CLN3-245ENST00000636172 FOXA3P55318 350 aaPredicted RBP14.81□□□□□ -0.04
CLN3-245ENST00000636172 ZNF415Q09FC8 603 aa14.81□□□□□ -0.04
CLN3-245ENST00000636172 ZNF493Q6ZR52 646 aa14.81□□□□□ -0.04
CLN3-245ENST00000636172 SPATA25Q9BR10 227 aa14.81□□□□□ -0.04
CLN3-245ENST00000636172 TPPP3Q9BW30 176 aa14.81□□□□□ -0.04
CLN3-245ENST00000636172 SSBP4Q9BWG4 385 aaPredicted RBP14.81□□□□□ -0.04
CLN3-245ENST00000636172 TIMM8BQ9Y5J9 83 aaPredicted RBP14.81□□□□□ -0.04
CLN3-245ENST00000636172 DNAH9Q9NYC9 4486 aa14.8□□□□□ -0.04
CLN3-245ENST00000636172 PRKDCP78527 4128 aaKnown RBP14.8□□□□□ -0.04
CLN3-245ENST00000636172 A0A1W2PPQ1 181 aa14.8□□□□□ -0.04
CLN3-245ENST00000636172 MED14OSP0DP75 135 aa14.8□□□□□ -0.04
CLN3-245ENST00000636172 CTRLP40313 264 aa14.8□□□□□ -0.04
CLN3-245ENST00000636172 Q8NAQ8 132 aa14.8□□□□□ -0.04
CLN3-245ENST00000636172 IL17DQ8TAD2 202 aa14.8□□□□□ -0.04
CLN3-245ENST00000636172 SCRT2Q9NQ03 307 aa14.8□□□□□ -0.04
CLN3-245ENST00000636172 NAT8BQ9UHF3 227 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms