RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 GTSF1Q8WW33 167 aa8.26□□□□□ -1.09
VMP1-207ENST00000588131 SMCO4Q9NRQ5 59 aa8.26□□□□□ -1.09
VMP1-207ENST00000588131 URGCP-MRPS24S4R325 110 aa8.26□□□□□ -1.09
VMP1-207ENST00000588131 DNAH3Q8TD57 4116 aa8.25□□□□□ -1.09
VMP1-207ENST00000588131 SMIM27A0A1W2PRY6 76 aa8.25□□□□□ -1.09
VMP1-207ENST00000588131 INSP01308 110 aa8.25□□□□□ -1.09
VMP1-207ENST00000588131 AMBPP02760 352 aa8.25□□□□□ -1.09
VMP1-207ENST00000588131 IGHV4-30-4P0DP06 118 aa8.25□□□□□ -1.09
VMP1-207ENST00000588131 NUTF2P61970 127 aaKnown RBP8.25□□□□□ -1.09
VMP1-207ENST00000588131 C1orf158Q8N1D5 194 aa8.25□□□□□ -1.09
VMP1-207ENST00000588131 YPEL4Q96NS1 127 aa8.25□□□□□ -1.09
VMP1-207ENST00000588131 NEU1Q99519 415 aa8.25□□□□□ -1.09
VMP1-207ENST00000588131 TUBA4BQ9H853 241 aa8.25□□□□□ -1.09
VMP1-207ENST00000588131 ZMAT5Q9UDW3 170 aaKnown RBP8.25□□□□□ -1.09
VMP1-207ENST00000588131 LOC102724200A0A096LPH7 203 aaPredicted RBP8.24□□□□□ -1.09
VMP1-207ENST00000588131 CXorf65A6NEN9 183 aa8.24□□□□□ -1.09
VMP1-207ENST00000588131 A8MWL6 223 aa8.24□□□□□ -1.09
VMP1-207ENST00000588131 GNRH2O43555 120 aa8.24□□□□□ -1.09
VMP1-207ENST00000588131 TYMSP04818 313 aa8.24□□□□□ -1.09
VMP1-207ENST00000588131 RPS20P60866 119 aaKnown RBP8.24□□□□□ -1.09
VMP1-207ENST00000588131 ELOBQ15370 118 aa8.24□□□□□ -1.09
VMP1-207ENST00000588131 IMMP2LQ96T52 175 aa8.24□□□□□ -1.09
VMP1-207ENST00000588131 CSTL1Q9H114 145 aa8.24□□□□□ -1.09
VMP1-207ENST00000588131 TP53TG3Q9ULZ0 132 aa8.24□□□□□ -1.09
VMP1-207ENST00000588131 NOTCH3Q9UM47 2321 aa8.24□□□□□ -1.09
VMP1-207ENST00000588131 IGHV1OR15-1A0A075B7D0 117 aa8.23□□□□□ -1.09
VMP1-207ENST00000588131 HIGD1CA8MV81 97 aa8.23□□□□□ -1.09
VMP1-207ENST00000588131 PRB2P02812 416 aaPredicted RBP8.23□□□□□ -1.09
VMP1-207ENST00000588131 PRM2P04554 102 aa8.23□□□□□ -1.09
VMP1-207ENST00000588131 CXCL1P09341 107 aa8.23□□□□□ -1.09
VMP1-207ENST00000588131 IGLC6P0CF74 106 aa8.23□□□□□ -1.09
VMP1-207ENST00000588131 S100PP25815 95 aa8.23□□□□□ -1.09
VMP1-207ENST00000588131 KPRPQ5T749 579 aaPredicted RBP8.23□□□□□ -1.09
VMP1-207ENST00000588131 KCNIP4Q6PIL6 250 aa8.23□□□□□ -1.09
VMP1-207ENST00000588131 FAM159AQ6UWV7 190 aa8.23□□□□□ -1.09
VMP1-207ENST00000588131 CSNK1G2-AS1Q8NCQ2 148 aa8.23□□□□□ -1.09
VMP1-207ENST00000588131 NUP35Q8NFH5 326 aa8.23□□□□□ -1.09
VMP1-207ENST00000588131 PGLYRP4Q96LB8 373 aa8.23□□□□□ -1.09
VMP1-207ENST00000588131 C20orf144Q9BQM9 153 aa8.23□□□□□ -1.09
VMP1-207ENST00000588131 TGIF2-C20orf24A0A0A6YYL0 155 aa8.22□□□□□ -1.09
VMP1-207ENST00000588131 A0A1W2PPQ1 181 aa8.22□□□□□ -1.09
VMP1-207ENST00000588131 XKRY2A2RUG3 117 aa8.22□□□□□ -1.09
VMP1-207ENST00000588131 SPINK4O60575 86 aa8.22□□□□□ -1.09
VMP1-207ENST00000588131 TDRG1Q3Y452 100 aa8.22□□□□□ -1.09
VMP1-207ENST00000588131 LINC01587Q99440 93 aa8.22□□□□□ -1.09
VMP1-207ENST00000588131 GFRA4Q9GZZ7 299 aa8.22□□□□□ -1.09
VMP1-207ENST00000588131 NAT8BQ9UHF3 227 aa8.22□□□□□ -1.09
VMP1-207ENST00000588131 IGHV3OR16-12A0A075B7B8 117 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 KIR2DL5BA0A0G2JN68 375 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 KIR2DL5BA0A0G2JPC4 375 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 FAM231BA6NCW3 169 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 COLCA2A8K830 154 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 A8MZ25 164 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 H3BVH4 76 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 SPRY2O43597 315 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 FRMD6-AS1P0C7T7 363 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 HTN1P15515 57 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 FOXA3P55318 350 aaPredicted RBP8.21□□□□□ -1.1
VMP1-207ENST00000588131 LYZL1Q6UWQ5 148 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 KIR2DL5AQ8N109 375 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 FER1L6-AS1Q8NA97 138 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 KIR2DL5BQ8NHK3 375 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 KCNS1Q96KK3 526 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 PYGO2Q9BRQ0 406 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 LINC00467Q9BRT7 94 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 TPPP3Q9BW30 176 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 C1QTNF4Q9BXJ3 329 aa8.21□□□□□ -1.1
VMP1-207ENST00000588131 TRBV24-1A0A075B6N3 115 aa8.2□□□□□ -1.1
VMP1-207ENST00000588131 IGHV3-16A0A0C4DH30 117 aa8.2□□□□□ -1.1
VMP1-207ENST00000588131 MUC21A0A0G2JKD1 596 aa8.2□□□□□ -1.1
VMP1-207ENST00000588131 MUC21A0A140T8X8 626 aa8.2□□□□□ -1.1
VMP1-207ENST00000588131 CBY3A6NI87 242 aa8.2□□□□□ -1.1
VMP1-207ENST00000588131 RNASE3P12724 160 aaKnown RBP8.2□□□□□ -1.1
VMP1-207ENST00000588131 CTRLP40313 264 aa8.2□□□□□ -1.1
VMP1-207ENST00000588131 ASIPP42127 132 aa8.2□□□□□ -1.1
VMP1-207ENST00000588131 APOC4P55056 127 aa8.2□□□□□ -1.1
VMP1-207ENST00000588131 DNLZQ5SXM8 178 aa8.2□□□□□ -1.1
VMP1-207ENST00000588131 MRPL54Q6P161 138 aaKnown RBP8.2□□□□□ -1.1
VMP1-207ENST00000588131 TMEM256Q8N2U0 113 aa8.2□□□□□ -1.1
VMP1-207ENST00000588131 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.2□□□□□ -1.1
VMP1-207ENST00000588131 TMEM208Q9BTX3 173 aa8.2□□□□□ -1.1
VMP1-207ENST00000588131 MDFICQ9P1T7 246 aa8.2□□□□□ -1.1
VMP1-207ENST00000588131 GOLT1BQ9Y3E0 138 aa8.2□□□□□ -1.1
VMP1-207ENST00000588131 TIMM8BQ9Y5J9 83 aaPredicted RBP8.2□□□□□ -1.1
VMP1-207ENST00000588131 TRGV11A0A075B6L2 103 aa8.19□□□□□ -1.1
VMP1-207ENST00000588131 TRAV9-1A0A075B6T8 112 aa8.19□□□□□ -1.1
VMP1-207ENST00000588131 K7EIL1 84 aa8.19□□□□□ -1.1
VMP1-207ENST00000588131 SNAI2O43623 268 aa8.19□□□□□ -1.1
VMP1-207ENST00000588131 ARMS2P0C7Q2 107 aa8.19□□□□□ -1.1
VMP1-207ENST00000588131 AZU1P20160 251 aa8.19□□□□□ -1.1
VMP1-207ENST00000588131 ZNF705AQ6ZN79 300 aaPredicted RBP8.19□□□□□ -1.1
VMP1-207ENST00000588131 BTF3L4Q96K17 158 aa8.19□□□□□ -1.1
VMP1-207ENST00000588131 FAM210BQ96KR6 192 aa8.19□□□□□ -1.1
VMP1-207ENST00000588131 SSBP4Q9BWG4 385 aaPredicted RBP8.19□□□□□ -1.1
VMP1-207ENST00000588131 OR5AL1P0C617 328 aa8.18□□□□□ -1.1
VMP1-207ENST00000588131 MED14OSP0DP75 135 aa8.18□□□□□ -1.1
VMP1-207ENST00000588131 S100A4P26447 101 aaKnown RBP8.18□□□□□ -1.1
VMP1-207ENST00000588131 SSTP61278 116 aa8.18□□□□□ -1.1
VMP1-207ENST00000588131 DEFB135Q30KP9 77 aa8.18□□□□□ -1.1
VMP1-207ENST00000588131 C11orf72Q8NBR9 251 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms