RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 ADGRB1O14514 1584 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 UBE2L6O14933 153 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 CCL16O15467 120 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 SIPA1L3O60292 1781 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 IGKV1-5P01602 117 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 HBDP02042 147 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 APCSP02743 223 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 COL5A3P25940 1745 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 IQGAP1P46940 1657 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 RPL23P62829 140 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 INSL4Q14641 139 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 C1orf100Q5SVJ3 147 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 NOXRED1Q6NXP6 359 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 GCC2Q8IWJ2 1684 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 Q8N8P6 123 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 MORN4Q8NDC4 146 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 COPS9Q8WXC6 57 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 H1FXQ92522 213 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 CCL13Q99616 98 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 NMES1Q9C002 83 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 NXT2Q9NPJ8 142 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 CMC2Q9NRP2 79 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 TMEM131Q92545 1883 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 PEAK1Q9H792 1746 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 ROBO1Q9Y6N7 1651 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 DNMT1P26358 1616 aaKnown RBP2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 PTPN23Q9H3S7 1636 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 IGHV6-1A0A0B4J1U7 121 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 IBA57-AS1B1ANH7 110 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 ATOX1O00244 68 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 HLA-DQA1P01909 254 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 PTHLHP12272 177 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 ZNF138P52744 262 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 KIAA0087Q14695 138 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 DEFB121Q5J5C9 76 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 CLLU1OSQ5K130 101 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 LYPD5Q6UWN5 251 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 BRD3OSQ6XYD6 125 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 SERP2Q8N6R1 65 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 WFDC5Q8TCV5 224 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 RNASE6Q93091 150 aaKnown RBP2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 TIMM17AQ99595 171 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 ZNF286AQ9HBT8 521 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 ABRACLQ9P1F3 81 aa2.03□□□□□ -2.08
SMCHD1-202ENST00000577300 RGPD1P0DJD0 1748 aa2.03□□□□□ -2.09
SMCHD1-202ENST00000577300 NWD2Q9ULI1 1742 aa2.03□□□□□ -2.09
SMCHD1-202ENST00000577300 CLTCQ00610 1675 aaKnown RBP2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 TOPAZ1Q8N9V7 1692 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 PREX1Q8TCU6 1659 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 AHDC1Q5TGY3 1603 aaPredicted RBP2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 EIF2AK4Q9P2K8 1649 aaKnown RBP2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 ABCC8Q09428 1581 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 CPS1P31327 1500 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 SCN9AQ15858 1988 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 IGKV1-9A0A0C4DH69 117 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 A0A0J9YXV3 536 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 TIMM17BO60830 172 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 HLA-DPB1P04440 258 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 CCKP06307 115 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 SCGB1C2P0DMR2 95 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 PSMB2P49721 201 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 DYNLT3P51808 116 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 FXYD2P54710 66 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 SNRPGP62308 76 aaKnown RBP2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 CIRBPQ14011 172 aaKnown RBP2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 RBMY1FQ15415 496 aaKnown RBP2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 C11orf71Q6IPW1 123 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 CYP2G1PQ6ZSU1 146 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 HIST1H4GQ99525 98 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 KRTAP4-1Q9BYQ7 146 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 ZNF492Q9P255 531 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 XCL2Q9UBD3 114 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 EPDR1Q9UM22 224 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 ZNF706Q9Y5V0 76 aaPredicted RBP2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 SLC25A15Q9Y619 301 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 BRCA1P38398 1863 aaKnown RBP2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 NLRC5Q86WI3 1866 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 OTOGLQ3ZCN5 2332 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 NUP188Q5SRE5 1749 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 PHRF1Q9P1Y6 1649 aaKnown RBP2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 ALKQ9UM73 1620 aa2.02□□□□□ -2.09
SMCHD1-202ENST00000577300 MRC1P22897 1456 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 PDCD11Q14690 1871 aaKnown RBP2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 ARFGEF2Q9Y6D5 1785 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 CRYBG1Q9Y4K1 1723 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 UBE2L5PA0A1B0GUS4 154 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 A6NN06 94 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 C17orf51A8MQB3 221 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 PSPHP1O15172 72 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 IGLV3-27P01718 113 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 RNASE4P34096 147 aaKnown RBP2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 BLCAPP62952 87 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 UBE2L3P68036 154 aaKnown RBP2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 REG3AQ06141 175 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 ZNF56Q15929 161 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 ZNF791Q3KP31 576 aaPredicted RBP2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 TMEM155Q4W5P6 130 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 C16orf47Q6ZP98 133 aaPredicted RBP2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 FAM19A2Q8N3H0 131 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 ZNF645Q8N7E2 425 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms