RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 H3BMM0 161 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 ATP6V0E1O15342 81 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 SLC25A20O43772 301 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 LEPROTL1O95214 131 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 IGHV3-9P01782 118 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 RPL18Q07020 188 aaKnown RBP3.7□□□□□ -1.82
VPS35-205ENST00000563984 ATP11AUNQ6ZP68 121 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 SCXQ7RTU7 201 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 PDPNQ86YL7 162 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 UBE2WQ96B02 151 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 ZNF706Q9Y5V0 76 aaPredicted RBP3.7□□□□□ -1.82
VPS35-205ENST00000563984 PLXNA1Q9UIW2 1896 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 ZNF236Q9UL36 1845 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 PIKFYVEQ9Y2I7 2098 aa3.69□□□□□ -1.82
VPS35-205ENST00000563984 IGKV1-8A0A0C4DH67 115 aa3.69□□□□□ -1.82
VPS35-205ENST00000563984 TCRBV4S1A1TA0A5B7 111 aa3.69□□□□□ -1.82
VPS35-205ENST00000563984 TSHBP01222 138 aa3.69□□□□□ -1.82
VPS35-205ENST00000563984 IGLV1-44P01699 117 aa3.69□□□□□ -1.82
VPS35-205ENST00000563984 IGHV4-38-2P0DP08 117 aa3.69□□□□□ -1.82
VPS35-205ENST00000563984 SLC25A16P16260 332 aa3.69□□□□□ -1.82
VPS35-205ENST00000563984 FXYD2P54710 66 aa3.69□□□□□ -1.82
VPS35-205ENST00000563984 UBE2D3P61077 147 aa3.69□□□□□ -1.82
VPS35-205ENST00000563984 UBE2D2P62837 147 aa3.69□□□□□ -1.82
VPS35-205ENST00000563984 RBM3P98179 157 aaKnown RBP3.69□□□□□ -1.82
VPS35-205ENST00000563984 FAM53AQ6NSI3 398 aaPredicted RBP3.69□□□□□ -1.82
VPS35-205ENST00000563984 CEMP1Q6PRD7 247 aaPredicted RBP3.69□□□□□ -1.82
VPS35-205ENST00000563984 CD177Q8N6Q3 437 aa3.69□□□□□ -1.82
VPS35-205ENST00000563984 IFI27L1Q96BM0 104 aa3.69□□□□□ -1.82
VPS35-205ENST00000563984 SLC50A1Q9BRV3 221 aa3.69□□□□□ -1.82
VPS35-205ENST00000563984 DLG5Q8TDM6 1919 aa3.69□□□□□ -1.82
VPS35-205ENST00000563984 DDX60Q8IY21 1712 aaKnown RBP3.69□□□□□ -1.82
VPS35-205ENST00000563984 ARHGAP21Q5T5U3 1957 aa3.69□□□□□ -1.82
VPS35-205ENST00000563984 TOGARAM1Q9Y4F4 1720 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 NINQ8N4C6 2090 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 IGKV1-27A0A075B6S5 117 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 TRAV3A0A0B4J244 114 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 A0A1B0GW54 56 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 A0A1B0GWA3 101 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 A6NIN4 97 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 CEBPZOSA8MTT3 80 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 C9JCJ5 164 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 LTAP01374 205 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 RNASE4P34096 147 aaKnown RBP3.68□□□□□ -1.82
VPS35-205ENST00000563984 ZNF138P52744 262 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 MARCH3Q86UD3 253 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 KRTAP7-1Q8IUC3 87 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 FAM19A2Q8N3H0 131 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 ZNRF1Q8ND25 227 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 ZNF563Q8TA94 476 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 TXNDC17Q9BRA2 123 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 PTPRBP23467 1997 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 SCN7AQ01118 1682 aa3.68□□□□□ -1.82
VPS35-205ENST00000563984 EML6Q6ZMW3 1958 aa3.67□□□□□ -1.82
VPS35-205ENST00000563984 PAPPAQ13219 1627 aa3.67□□□□□ -1.82
VPS35-205ENST00000563984 IGLV3-10A0A075B6K4 115 aa3.67□□□□□ -1.82
VPS35-205ENST00000563984 IGLV9-49A0A0B4J1Y8 123 aa3.67□□□□□ -1.82
VPS35-205ENST00000563984 A0A0B4J2C4 111 aa3.67□□□□□ -1.82
VPS35-205ENST00000563984 TRBV5-4A0A0C4DH59 114 aa3.67□□□□□ -1.82
VPS35-205ENST00000563984 H3BVH4 76 aa3.67□□□□□ -1.82
VPS35-205ENST00000563984 J3QLW9 94 aa3.67□□□□□ -1.82
VPS35-205ENST00000563984 CCL4P13236 92 aa3.67□□□□□ -1.82
VPS35-205ENST00000563984 PEBP1P30086 187 aaKnown RBP3.67□□□□□ -1.82
VPS35-205ENST00000563984 Q1T7F1 81 aa3.67□□□□□ -1.82
VPS35-205ENST00000563984 C1orf100Q5SVJ3 147 aa3.67□□□□□ -1.82
VPS35-205ENST00000563984 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.67□□□□□ -1.82
VPS35-205ENST00000563984 SLC48A1Q6P1K1 146 aa3.67□□□□□ -1.82
VPS35-205ENST00000563984 ZNF843Q8N446 348 aa3.67□□□□□ -1.82
VPS35-205ENST00000563984 FAM216BQ8N7L0 139 aa3.67□□□□□ -1.82
VPS35-205ENST00000563984 RNASE6Q93091 150 aaKnown RBP3.67□□□□□ -1.82
VPS35-205ENST00000563984 ZNF702PQ9H963 129 aa3.67□□□□□ -1.82
VPS35-205ENST00000563984 MRPL35Q9NZE8 188 aaKnown RBP3.67□□□□□ -1.82
VPS35-205ENST00000563984 DLEC1Q9Y238 1755 aa3.66□□□□□ -1.82
VPS35-205ENST00000563984 DYSFO75923 2080 aa3.66□□□□□ -1.82
VPS35-205ENST00000563984 E7EQL1 145 aa3.66□□□□□ -1.82
VPS35-205ENST00000563984 CD28P10747 220 aa3.66□□□□□ -1.82
VPS35-205ENST00000563984 RHOHQ15669 191 aa3.66□□□□□ -1.82
VPS35-205ENST00000563984 LINC00173Q6ZV60 143 aa3.66□□□□□ -1.82
VPS35-205ENST00000563984 ZNF491Q8N8L2 437 aa3.66□□□□□ -1.82
VPS35-205ENST00000563984 CYSTM1Q9H1C7 97 aa3.66□□□□□ -1.82
VPS35-205ENST00000563984 OSTCQ9NRP0 149 aa3.66□□□□□ -1.82
VPS35-205ENST00000563984 ANKRD12Q6UB98 2062 aa3.66□□□□□ -1.82
VPS35-205ENST00000563984 TNRC18O15417 2968 aaPredicted RBP3.66□□□□□ -1.82
VPS35-205ENST00000563984 OBSL1O75147 1896 aa3.65□□□□□ -1.82
VPS35-205ENST00000563984 IGHV1-45A0A0A0MS14 117 aa3.65□□□□□ -1.83
VPS35-205ENST00000563984 TRAV13-2A0A0B4J235 113 aa3.65□□□□□ -1.83
VPS35-205ENST00000563984 LOC107984156A0A0G2JMH3 177 aa3.65□□□□□ -1.83
VPS35-205ENST00000563984 C19orf71A6NCJ1 209 aa3.65□□□□□ -1.83
VPS35-205ENST00000563984 C19orf84I3L1E1 186 aa3.65□□□□□ -1.83
VPS35-205ENST00000563984 PIRTP0C851 137 aa3.65□□□□□ -1.83
VPS35-205ENST00000563984 SAA1P0DJI8 122 aaPredicted RBP3.65□□□□□ -1.83
VPS35-205ENST00000563984 XCL1P47992 114 aa3.65□□□□□ -1.83
VPS35-205ENST00000563984 CSRP3P50461 194 aa3.65□□□□□ -1.83
VPS35-205ENST00000563984 IL17AQ16552 155 aa3.65□□□□□ -1.83
VPS35-205ENST00000563984 ASB16-AS1Q495Z4 193 aa3.65□□□□□ -1.83
VPS35-205ENST00000563984 C16orf47Q6ZP98 133 aaPredicted RBP3.65□□□□□ -1.83
VPS35-205ENST00000563984 SDIM1Q6ZPB5 146 aa3.65□□□□□ -1.83
VPS35-205ENST00000563984 ARL17AQ8IVW1 177 aa3.65□□□□□ -1.83
VPS35-205ENST00000563984 LINC01555Q8NAE3 123 aa3.65□□□□□ -1.83
VPS35-205ENST00000563984 DYNLRB2Q8TF09 96 aa3.65□□□□□ -1.83
VPS35-205ENST00000563984 ITLN1Q8WWA0 313 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms