RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 TRAV25A0A0B4J276 109 aa8.79□□□□□ -1
CUX1-218ENST00000560541 IGHV3-66A0A0C4DH42 116 aa8.79□□□□□ -1
CUX1-218ENST00000560541 TGFAP01135 160 aa8.79□□□□□ -1
CUX1-218ENST00000560541 ZNF493Q6ZR52 646 aa8.79□□□□□ -1
CUX1-218ENST00000560541 PHLDA1Q8WV24 401 aaPredicted RBP8.79□□□□□ -1
CUX1-218ENST00000560541 CELSR1Q9NYQ6 3014 aa8.79□□□□□ -1
CUX1-218ENST00000560541 ORM1P02763 201 aa8.79□□□□□ -1
CUX1-218ENST00000560541 CDSNQ15517 529 aa8.79□□□□□ -1
CUX1-218ENST00000560541 GATD1Q8NB37 220 aa8.79□□□□□ -1
CUX1-218ENST00000560541 SPTAN1Q13813 2472 aaKnown RBP8.79□□□□□ -1
CUX1-218ENST00000560541 TCF15Q12870 199 aa8.78□□□□□ -1
CUX1-218ENST00000560541 MAP1AP78559 2803 aaPredicted RBP8.78□□□□□ -1
CUX1-218ENST00000560541 NDUFA3O95167 84 aa8.78□□□□□ -1
CUX1-218ENST00000560541 SMCPP49901 116 aaPredicted RBP8.78□□□□□ -1
CUX1-218ENST00000560541 ERCC8Q13216 396 aa8.78□□□□□ -1
CUX1-218ENST00000560541 PDE6HQ13956 83 aa8.78□□□□□ -1
CUX1-218ENST00000560541 CHAC1Q9BUX1 264 aa8.78□□□□□ -1
CUX1-218ENST00000560541 TRAV4A0A0B4J268 109 aa8.77□□□□□ -1
CUX1-218ENST00000560541 RNF182Q8N6D2 247 aa8.77□□□□□ -1
CUX1-218ENST00000560541 LY6G5BQ8NDX9 201 aa8.77□□□□□ -1
CUX1-218ENST00000560541 NPBQ8NG41 125 aa8.77□□□□□ -1
CUX1-218ENST00000560541 DKK2Q9UBU2 259 aa8.77□□□□□ -1
CUX1-218ENST00000560541 SMAD5-AS1Q9Y6J3 95 aa8.77□□□□□ -1
CUX1-218ENST00000560541 VPS13CQ709C8 3753 aa8.77□□□□□ -1
CUX1-218ENST00000560541 HBDP02042 147 aa8.77□□□□□ -1.01
CUX1-218ENST00000560541 RPL7P18124 248 aaKnown RBP8.77□□□□□ -1.01
CUX1-218ENST00000560541 OR11H6Q8NGC7 330 aa8.77□□□□□ -1.01
CUX1-218ENST00000560541 CARD19Q96LW7 228 aa8.77□□□□□ -1.01
CUX1-218ENST00000560541 PRAC2D3DTV9 90 aa8.77□□□□□ -1.01
CUX1-218ENST00000560541 CTSGP08311 255 aa8.77□□□□□ -1.01
CUX1-218ENST00000560541 SRSF9Q13242 221 aaKnown RBP eCLIP8.77□□□□□ -1.01
CUX1-218ENST00000560541 IFI27L1Q96BM0 104 aa8.77□□□□□ -1.01
CUX1-218ENST00000560541 VKORC1Q9BQB6 163 aa8.77□□□□□ -1.01
CUX1-218ENST00000560541 IGHV3-49A0A0A0MS15 119 aa8.76□□□□□ -1.01
CUX1-218ENST00000560541 SMIM9A6NGZ8 99 aa8.76□□□□□ -1.01
CUX1-218ENST00000560541 H3BVH4 76 aa8.76□□□□□ -1.01
CUX1-218ENST00000560541 CRLF1O75462 422 aa8.76□□□□□ -1.01
CUX1-218ENST00000560541 IGHG4P01861 327 aa8.76□□□□□ -1.01
CUX1-218ENST00000560541 IFITM1P13164 125 aa8.76□□□□□ -1.01
CUX1-218ENST00000560541 Q6ZQT7 251 aa8.76□□□□□ -1.01
CUX1-218ENST00000560541 U3KQK5 164 aa8.76□□□□□ -1.01
CUX1-218ENST00000560541 IGKV2D-26A0A0A0MRZ7 120 aa8.76□□□□□ -1.01
CUX1-218ENST00000560541 GATA1P15976 413 aaPredicted RBP8.76□□□□□ -1.01
CUX1-218ENST00000560541 PSMB2P49721 201 aa8.76□□□□□ -1.01
CUX1-218ENST00000560541 FOXC1Q12948 553 aa8.76□□□□□ -1.01
CUX1-218ENST00000560541 ECSCRQ19T08 205 aa8.75□□□□□ -1.01
CUX1-218ENST00000560541 C12orf74Q32Q52 190 aa8.75□□□□□ -1.01
CUX1-218ENST00000560541 LOC107984156A0A0G2JMH3 177 aa8.75□□□□□ -1.01
CUX1-218ENST00000560541 LINC00694P0DN24 101 aa8.75□□□□□ -1.01
CUX1-218ENST00000560541 VMO1Q7Z5L0 202 aa8.75□□□□□ -1.01
CUX1-218ENST00000560541 ZNF575Q86XF7 245 aa8.75□□□□□ -1.01
CUX1-218ENST00000560541 ARL17AQ8IVW1 177 aa8.75□□□□□ -1.01
CUX1-218ENST00000560541 TIMD4Q96H15 378 aa8.75□□□□□ -1.01
CUX1-218ENST00000560541 MAP1LC3AQ9H492 121 aa8.75□□□□□ -1.01
CUX1-218ENST00000560541 COL12A1Q99715 3063 aa8.75□□□□□ -1.01
CUX1-218ENST00000560541 RHODO00212 210 aa8.75□□□□□ -1.01
CUX1-218ENST00000560541 CCL21O00585 134 aa8.75□□□□□ -1.01
CUX1-218ENST00000560541 LGALS9BQ3B8N2 356 aa8.75□□□□□ -1.01
CUX1-218ENST00000560541 LGALS9CQ6DKI2 356 aa8.75□□□□□ -1.01
CUX1-218ENST00000560541 NRGNQ92686 78 aa8.75□□□□□ -1.01
CUX1-218ENST00000560541 AGRNO00468 2067 aa8.74□□□□□ -1.01
CUX1-218ENST00000560541 ODF3BA8MYP8 253 aa8.74□□□□□ -1.01
CUX1-218ENST00000560541 NDUFS7O75251 213 aa8.74□□□□□ -1.01
CUX1-218ENST00000560541 SNCGO76070 127 aa8.74□□□□□ -1.01
CUX1-218ENST00000560541 PAX8Q06710 450 aa8.74□□□□□ -1.01
CUX1-218ENST00000560541 SRSF1Q07955 248 aaKnown RBP eCLIP8.74□□□□□ -1.01
CUX1-218ENST00000560541 IL17RELQ6ZVW7 336 aa8.74□□□□□ -1.01
CUX1-218ENST00000560541 IGLC6P0CF74 106 aa8.73□□□□□ -1.01
CUX1-218ENST00000560541 C15orf32Q32M92 178 aa8.73□□□□□ -1.01
CUX1-218ENST00000560541 IGHV7-81A0A0B4J1V7 117 aa8.73□□□□□ -1.01
CUX1-218ENST00000560541 LEPP41159 167 aa8.73□□□□□ -1.01
CUX1-218ENST00000560541 RNF185Q96GF1 192 aa8.73□□□□□ -1.01
CUX1-218ENST00000560541 ZFP36P26651 326 aaKnown RBP8.73□□□□□ -1.01
CUX1-218ENST00000560541 RRN3P1Q2M238 152 aa8.73□□□□□ -1.01
CUX1-218ENST00000560541 CEND1Q8N111 149 aa8.72□□□□□ -1.01
CUX1-218ENST00000560541 PPDPFLQ8WWR9 84 aa8.72□□□□□ -1.01
CUX1-218ENST00000560541 CENPVL3A0A0U1RRI6 287 aa8.72□□□□□ -1.01
CUX1-218ENST00000560541 GTSCR1Q86UQ5 136 aa8.72□□□□□ -1.01
CUX1-218ENST00000560541 TRBV25-1A0A075B6N4 114 aa8.71□□□□□ -1.01
CUX1-218ENST00000560541 M0R1W7 72 aa8.71□□□□□ -1.01
CUX1-218ENST00000560541 PRSS1P07477 247 aa8.71□□□□□ -1.01
CUX1-218ENST00000560541 TRAV26-2A0A0B4J265 109 aa8.71□□□□□ -1.02
CUX1-218ENST00000560541 G3V318 75 aa8.71□□□□□ -1.02
CUX1-218ENST00000560541 TNFRSF6BO95407 300 aa8.71□□□□□ -1.02
CUX1-218ENST00000560541 ZNF688P0C7X2 276 aa8.71□□□□□ -1.02
CUX1-218ENST00000560541 ZFP2Q6ZN57 461 aa8.71□□□□□ -1.02
CUX1-218ENST00000560541 NCOR2Q9Y618 2525 aa8.71□□□□□ -1.02
CUX1-218ENST00000560541 TRGV3P03979 118 aa8.71□□□□□ -1.02
CUX1-218ENST00000560541 CFAP126Q5VTH2 177 aa8.71□□□□□ -1.02
CUX1-218ENST00000560541 CLEC19AQ6UXS0 136 aa8.71□□□□□ -1.02
CUX1-218ENST00000560541 HIST1H4GQ99525 98 aa8.71□□□□□ -1.02
CUX1-218ENST00000560541 CHD8Q9HCK8 2581 aa8.71□□□□□ -1.02
CUX1-218ENST00000560541 TRAV8-2A0A0B4J237 113 aa8.7□□□□□ -1.02
CUX1-218ENST00000560541 C11orf21Q9P2W6 132 aa8.7□□□□□ -1.02
CUX1-218ENST00000560541 MSRB2Q9Y3D2 182 aa8.7□□□□□ -1.02
CUX1-218ENST00000560541 ATP6V0E1O15342 81 aa8.7□□□□□ -1.02
CUX1-218ENST00000560541 FAM19A5Q7Z5A7 132 aaPredicted RBP8.7□□□□□ -1.02
CUX1-218ENST00000560541 Q8N6K4 173 aa8.7□□□□□ -1.02
CUX1-218ENST00000560541 Q8N9W7 124 aa8.7□□□□□ -1.02
CUX1-218ENST00000560541 TMEM190Q8WZ59 177 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms