RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 LOC102724200A0A096LPH7 203 aaPredicted RBP9.43□□□□□ -0.9
USP3-213ENST00000559711 OR4C46A6NHA9 309 aa9.43□□□□□ -0.9
USP3-213ENST00000559711 A8MTW9 85 aa9.43□□□□□ -0.9
USP3-213ENST00000559711 OR5AL1P0C617 328 aa9.43□□□□□ -0.9
USP3-213ENST00000559711 LINC00310P59036 64 aa9.43□□□□□ -0.9
USP3-213ENST00000559711 DEFB131AP59861 70 aa9.43□□□□□ -0.9
USP3-213ENST00000559711 NSUN5P1Q3KNT7 163 aa9.43□□□□□ -0.9
USP3-213ENST00000559711 HIST1H2BLQ99880 126 aa9.43□□□□□ -0.9
USP3-213ENST00000559711 ZNF256Q9Y2P7 627 aaPredicted RBP9.43□□□□□ -0.9
USP3-213ENST00000559711 SNAI2O43623 268 aa9.42□□□□□ -0.9
USP3-213ENST00000559711 NUPR1O60356 82 aa9.42□□□□□ -0.9
USP3-213ENST00000559711 NTF3P20783 257 aa9.42□□□□□ -0.9
USP3-213ENST00000559711 AMTNQ6UX39 209 aa9.42□□□□□ -0.9
USP3-213ENST00000559711 BAGE3Q86Y29 109 aa9.42□□□□□ -0.9
USP3-213ENST00000559711 LINC00518Q8N0U6 118 aa9.42□□□□□ -0.9
USP3-213ENST00000559711 ZNF324O75467 553 aaPredicted RBP9.42□□□□□ -0.9
USP3-213ENST00000559711 AMBPP02760 352 aa9.42□□□□□ -0.9
USP3-213ENST00000559711 HLA-DRB4P13762 266 aa9.42□□□□□ -0.9
USP3-213ENST00000559711 FABP4P15090 132 aa9.42□□□□□ -0.9
USP3-213ENST00000559711 TSPOP30536 169 aa9.42□□□□□ -0.9
USP3-213ENST00000559711 DNLZQ5SXM8 178 aa9.42□□□□□ -0.9
USP3-213ENST00000559711 C18orf32Q8TCD1 76 aa9.42□□□□□ -0.9
USP3-213ENST00000559711 HLA-DRB4X5D2U9 266 aa9.42□□□□□ -0.9
USP3-213ENST00000559711 IGHV4-4A0A075B6R2 117 aa9.41□□□□□ -0.9
USP3-213ENST00000559711 MUC21A0A0G2JKD1 596 aa9.41□□□□□ -0.9
USP3-213ENST00000559711 MUC21A0A140T8X8 626 aa9.41□□□□□ -0.9
USP3-213ENST00000559711 C7orf71A4D174 169 aa9.41□□□□□ -0.9
USP3-213ENST00000559711 H3BMM0 161 aa9.41□□□□□ -0.9
USP3-213ENST00000559711 SERF1AO75920 110 aa9.41□□□□□ -0.9
USP3-213ENST00000559711 CDKN1BP46527 198 aa9.41□□□□□ -0.9
USP3-213ENST00000559711 TWIST1Q15672 202 aa9.41□□□□□ -0.9
USP3-213ENST00000559711 ANXA2RQ3ZCQ2 193 aa9.41□□□□□ -0.9
USP3-213ENST00000559711 PRR31Q5SQ13 230 aa9.41□□□□□ -0.9
USP3-213ENST00000559711 MUC21Q5SSG8 566 aa9.41□□□□□ -0.9
USP3-213ENST00000559711 FAM104BQ5XKR9 115 aa9.41□□□□□ -0.9
USP3-213ENST00000559711 TMEM191AQ9H0A3 160 aa9.41□□□□□ -0.9
USP3-213ENST00000559711 MAP6D1Q9H9H5 199 aa9.41□□□□□ -0.9
USP3-213ENST00000559711 KNCNA6PVL3 124 aa9.4□□□□□ -0.9
USP3-213ENST00000559711 MED14OSP0DP75 135 aa9.4□□□□□ -0.9
USP3-213ENST00000559711 DMRTA1Q5VZB9 504 aa9.4□□□□□ -0.9
USP3-213ENST00000559711 OR10D4PQ8NGN7 298 aa9.4□□□□□ -0.9
USP3-213ENST00000559711 TMEM18Q96B42 140 aa9.4□□□□□ -0.9
USP3-213ENST00000559711 NAGKQ9UJ70 344 aa9.4□□□□□ -0.9
USP3-213ENST00000559711 F8P00451 2351 aa9.4□□□□□ -0.9
USP3-213ENST00000559711 WNK1Q9H4A3 2382 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 IGKV3-20P01619 116 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 SSTP61278 116 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 CACNG7P62955 275 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 TDRG1Q3Y452 100 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 PACRGQ96M98 296 aaPredicted RBP9.39□□□□□ -0.91
USP3-213ENST00000559711 SCRT2Q9NQ03 307 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 MSRB1Q9NZV6 116 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 TRAV12-3A0A0B4J271 114 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 M0R2Z0 102 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 IGLV1-51P01701 117 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 SMIM6P0DI80 62 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 ASIPP42127 132 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 OR2K2Q8NGT1 345 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 OR10AG1Q8NH19 301 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 KCNS1Q96KK3 526 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 CLUHP3Q96NS8 147 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 RCHY1Q96PM5 261 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 U3KQK5 164 aa9.39□□□□□ -0.91
USP3-213ENST00000559711 NIPBLQ6KC79 2804 aaeCLIP9.38□□□□□ -0.91
USP3-213ENST00000559711 H3BVH4 76 aa9.38□□□□□ -0.91
USP3-213ENST00000559711 GNRH2O43555 120 aa9.38□□□□□ -0.91
USP3-213ENST00000559711 SAP30O75446 220 aa9.38□□□□□ -0.91
USP3-213ENST00000559711 IQCJQ1A5X6 159 aa9.38□□□□□ -0.91
USP3-213ENST00000559711 SPINK13Q1W4C9 94 aa9.38□□□□□ -0.91
USP3-213ENST00000559711 ODF3L2Q3SX64 289 aa9.38□□□□□ -0.91
USP3-213ENST00000559711 FAM159AQ6UWV7 190 aa9.38□□□□□ -0.91
USP3-213ENST00000559711 AMN1Q8IY45 258 aa9.38□□□□□ -0.91
USP3-213ENST00000559711 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.38□□□□□ -0.91
USP3-213ENST00000559711 TRAV12-2A0A075B6T6 113 aa9.37□□□□□ -0.91
USP3-213ENST00000559711 RNASE3P12724 160 aaKnown RBP9.37□□□□□ -0.91
USP3-213ENST00000559711 S100A4P26447 101 aaKnown RBP9.37□□□□□ -0.91
USP3-213ENST00000559711 ZNF124Q15973 351 aa9.37□□□□□ -0.91
USP3-213ENST00000559711 LINC00482Q8N8I6 264 aa9.37□□□□□ -0.91
USP3-213ENST00000559711 SORL1Q92673 2214 aa9.37□□□□□ -0.91
USP3-213ENST00000559711 BAHCC1Q9P281 2608 aa9.37□□□□□ -0.91
USP3-213ENST00000559711 RBMY1BA6NDE4 496 aaKnown RBP9.36□□□□□ -0.91
USP3-213ENST00000559711 RBMY1EA6NEQ0 496 aaKnown RBP9.36□□□□□ -0.91
USP3-213ENST00000559711 RBMY1DP0C7P1 496 aaKnown RBP9.36□□□□□ -0.91
USP3-213ENST00000559711 CMC4P56277 68 aaPredicted RBP9.36□□□□□ -0.91
USP3-213ENST00000559711 MRPL51Q4U2R6 128 aaKnown RBP9.36□□□□□ -0.91
USP3-213ENST00000559711 SPANXN1Q5VSR9 72 aa9.36□□□□□ -0.91
USP3-213ENST00000559711 RNF185Q96GF1 192 aa9.36□□□□□ -0.91
USP3-213ENST00000559711 C12orf57Q99622 126 aa9.36□□□□□ -0.91
USP3-213ENST00000559711 CRXO43186 299 aaPredicted RBP9.36□□□□□ -0.91
USP3-213ENST00000559711 PF4P02776 101 aa9.36□□□□□ -0.91
USP3-213ENST00000559711 RAB4AP20338 218 aa9.36□□□□□ -0.91
USP3-213ENST00000559711 PYY3Q5JQD4 70 aa9.36□□□□□ -0.91
USP3-213ENST00000559711 FAM110AQ9BQ89 295 aa9.36□□□□□ -0.91
USP3-213ENST00000559711 IGHV1OR15-1A0A075B7D0 117 aa9.35□□□□□ -0.91
USP3-213ENST00000559711 OR11H12B2RN74 326 aa9.35□□□□□ -0.91
USP3-213ENST00000559711 D6R8Y8 96 aa9.35□□□□□ -0.91
USP3-213ENST00000559711 NXPH4O95158 308 aa9.35□□□□□ -0.91
USP3-213ENST00000559711 BEAN1Q3B7T3 259 aa9.35□□□□□ -0.91
USP3-213ENST00000559711 NIT1Q86X76 327 aa9.35□□□□□ -0.91
USP3-213ENST00000559711 ORMDL3Q8N138 153 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 128.5 ms