RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 OR5AL1P0C617 328 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 FABP4P15090 132 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 HLA-DMBP28068 263 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 SRIP30626 198 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 LEPP41159 167 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 CAMPP49913 170 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 CMC4P56277 68 aaPredicted RBP4.66□□□□□ -1.66
SYNE1-239ENST00000545694 SYNJ2BPP57105 145 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 HIST2H2BCQ6DN03 193 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 EBLN2Q6P2I7 272 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 SMIM15Q7Z3B0 74 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 OR9G4Q8NGQ1 327 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 CHCHD1Q96BP2 118 aaKnown RBP4.66□□□□□ -1.66
SYNE1-239ENST00000545694 KCNS1Q96KK3 526 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 WWC2-AS2Q96NR7 200 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 ALKBH7Q9BT30 221 aaPredicted RBP4.66□□□□□ -1.66
SYNE1-239ENST00000545694 TMEM191AQ9H0A3 160 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 MS4A6AQ9H2W1 248 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 LAMTOR2Q9Y2Q5 125 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 TSSC4Q9Y5U2 329 aaPredicted RBP4.66□□□□□ -1.66
SYNE1-239ENST00000545694 IFITM10A6NMD0 228 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 KLLNB2CW77 178 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 SNAI2O43623 268 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 AMBPP02760 352 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 ERCC8Q13216 396 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 SLAQ13239 276 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 FHL3Q13643 280 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 JOSD1Q15040 202 aaPredicted RBP4.65□□□□□ -1.67
SYNE1-239ENST00000545694 IQCJQ1A5X6 159 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 TCTEX1D4Q5JR98 221 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 IGFL4Q6B9Z1 124 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 LYZL1Q6UWQ5 148 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 FOXI2Q6ZQN5 318 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 ZFAND2AQ8N6M9 145 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 KLHL30-AS1Q8NEE0 82 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 OR11H1Q8NG94 326 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 OR10D4PQ8NGN7 298 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 Q8TAT8 98 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 C18orf32Q8TCD1 76 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 CLUHP3Q96NS8 147 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 X6R8D5 127 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 SETXQ7Z333 2677 aaKnown RBP4.65□□□□□ -1.67
SYNE1-239ENST00000545694 AGRNO00468 2067 aa4.65□□□□□ -1.67
SYNE1-239ENST00000545694 FLNBO75369 2602 aaKnown RBP4.64□□□□□ -1.67
SYNE1-239ENST00000545694 OR4C46A6NHA9 309 aa4.64□□□□□ -1.67
SYNE1-239ENST00000545694 A8MTW9 85 aa4.64□□□□□ -1.67
SYNE1-239ENST00000545694 SERF1AO75920 110 aa4.64□□□□□ -1.67
SYNE1-239ENST00000545694 ARMS2P0C7Q2 107 aa4.64□□□□□ -1.67
SYNE1-239ENST00000545694 ZNF80P51504 273 aaPredicted RBP4.64□□□□□ -1.67
SYNE1-239ENST00000545694 GDF5OSQ5U4N7 250 aa4.64□□□□□ -1.67
SYNE1-239ENST00000545694 GFI1BQ5VTD9 330 aa4.64□□□□□ -1.67
SYNE1-239ENST00000545694 FAM104BQ5XKR9 115 aa4.64□□□□□ -1.67
SYNE1-239ENST00000545694 C10orf99Q6UWK7 81 aa4.64□□□□□ -1.67
SYNE1-239ENST00000545694 OR2K2Q8NGT1 345 aa4.64□□□□□ -1.67
SYNE1-239ENST00000545694 LINC01006Q8NI28 216 aa4.64□□□□□ -1.67
SYNE1-239ENST00000545694 SPAG8Q99932 426 aaPredicted RBP4.64□□□□□ -1.67
SYNE1-239ENST00000545694 SAMD10Q9BYL1 202 aa4.64□□□□□ -1.67
SYNE1-239ENST00000545694 ESM1Q9NQ30 184 aa4.64□□□□□ -1.67
SYNE1-239ENST00000545694 U3KQK5 164 aa4.64□□□□□ -1.67
SYNE1-239ENST00000545694 C2CD3Q4AC94 2353 aa4.64□□□□□ -1.67
SYNE1-239ENST00000545694 OTOGQ6ZRI0 2925 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 FN1P02751 2386 aaKnown RBP4.63□□□□□ -1.67
SYNE1-239ENST00000545694 IGKV3D-20A0A0C4DH25 116 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 A0A0J9YX75 114 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 GRIFINA4D1Z8 144 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 TCF21O43680 179 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 ZNF324O75467 553 aaPredicted RBP4.63□□□□□ -1.67
SYNE1-239ENST00000545694 HSBP1O75506 76 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 PPP1R17O96001 155 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 GZMBP10144 247 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 NTF3P20783 257 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 ASIPP42127 132 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 TWIST1Q15672 202 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 KIAA1644Q3SXP7 199 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 TDRG1Q3Y452 100 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 PYY3Q5JQD4 70 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 KHDC1LQ5JSQ8 128 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 ORMDL3Q8N138 153 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 TMEM256Q8N2U0 113 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 DEFB125Q8N687 156 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 DYNLRB2Q8TF09 96 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 DUX5Q96PT3 197 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 FAM110AQ9BQ89 295 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 C20orf144Q9BQM9 153 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 NIT2Q9NQR4 276 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 HIVEP1P15822 2718 aa4.63□□□□□ -1.67
SYNE1-239ENST00000545694 C7orf71A4D174 169 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 CCL24O00175 119 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 LY6G6DO95868 133 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 CSN3P07498 182 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 FRMD6-AS1P0C7T7 363 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 LINC00614P0C842 121 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 HLA-DRB4P13762 266 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 S100A4P26447 101 aaKnown RBP4.62□□□□□ -1.67
SYNE1-239ENST00000545694 CDKN1BP46527 198 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 AMTP48728 403 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 DEFB114Q30KQ6 69 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 PDZD11Q5EBL8 140 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 PSMG4Q5JS54 123 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 FAM159AQ6UWV7 190 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms