RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 BLMP54132 1417 aaPredicted RBP-0.3□□□□□ -2.46
VPS50-217ENST00000485140 ANKRD31Q8N7Z5 1873 aa-0.31□□□□□ -2.46
VPS50-217ENST00000485140 UNC13BO14795 1591 aa-0.31□□□□□ -2.46
VPS50-217ENST00000485140 ABCA4P78363 2273 aa-0.31□□□□□ -2.46
VPS50-217ENST00000485140 TRAV13-1A0A0B4J241 112 aa-0.31□□□□□ -2.46
VPS50-217ENST00000485140 PGRMC1O00264 195 aaKnown RBP-0.31□□□□□ -2.46
VPS50-217ENST00000485140 CDC42EP2O14613 210 aa-0.31□□□□□ -2.46
VPS50-217ENST00000485140 IFNA21P01568 189 aa-0.31□□□□□ -2.46
VPS50-217ENST00000485140 CCKP06307 115 aa-0.31□□□□□ -2.46
VPS50-217ENST00000485140 CCDC32Q9BV29 185 aa-0.31□□□□□ -2.46
VPS50-217ENST00000485140 TCOF1Q13428 1488 aaKnown RBP-0.31□□□□□ -2.46
VPS50-217ENST00000485140 CACNA1AO00555 2505 aa-0.31□□□□□ -2.46
VPS50-217ENST00000485140 EIF3AQ14152 1382 aaKnown RBP-0.32□□□□□ -2.46
VPS50-217ENST00000485140 LAMC3Q9Y6N6 1575 aa-0.32□□□□□ -2.46
VPS50-217ENST00000485140 NUP210Q8TEM1 1887 aaPredicted RBP-0.32□□□□□ -2.46
VPS50-217ENST00000485140 RREB1Q92766 1687 aa-0.32□□□□□ -2.46
VPS50-217ENST00000485140 TEX49A0A1B0GTD5 131 aa-0.32□□□□□ -2.46
VPS50-217ENST00000485140 C9JAW5 83 aa-0.32□□□□□ -2.46
VPS50-217ENST00000485140 H3BMG7 143 aa-0.32□□□□□ -2.46
VPS50-217ENST00000485140 SERPINB1P30740 379 aa-0.32□□□□□ -2.46
VPS50-217ENST00000485140 S100A11P31949 105 aa-0.32□□□□□ -2.46
VPS50-217ENST00000485140 CKS2P33552 79 aa-0.32□□□□□ -2.46
VPS50-217ENST00000485140 MRPS15P82914 257 aaKnown RBP-0.32□□□□□ -2.46
VPS50-217ENST00000485140 DCUN1D2Q6PH85 259 aa-0.32□□□□□ -2.46
VPS50-217ENST00000485140 MORN4Q8NDC4 146 aa-0.32□□□□□ -2.46
VPS50-217ENST00000485140 VPS25Q9BRG1 176 aa-0.32□□□□□ -2.46
VPS50-217ENST00000485140 TENM4Q6N022 2769 aa-0.33□□□□□ -2.46
VPS50-217ENST00000485140 TRAV12-2A0A075B6T6 113 aa-0.33□□□□□ -2.46
VPS50-217ENST00000485140 MAP1LC3B2A6NCE7 125 aa-0.33□□□□□ -2.46
VPS50-217ENST00000485140 PPP5D1E7EU14 171 aa-0.33□□□□□ -2.46
VPS50-217ENST00000485140 FAM107AO95990 144 aa-0.33□□□□□ -2.46
VPS50-217ENST00000485140 SLC25A4P12235 298 aa-0.33□□□□□ -2.46
VPS50-217ENST00000485140 POLR2JP52435 117 aaKnown RBP-0.33□□□□□ -2.46
VPS50-217ENST00000485140 BLCAPP62952 87 aa-0.33□□□□□ -2.46
VPS50-217ENST00000485140 BASP1P80723 227 aaKnown RBP-0.33□□□□□ -2.46
VPS50-217ENST00000485140 C3orf33Q6P1S2 294 aa-0.33□□□□□ -2.46
VPS50-217ENST00000485140 TEX29Q8N6K0 151 aa-0.33□□□□□ -2.46
VPS50-217ENST00000485140 OR51A4Q8NGJ6 313 aa-0.33□□□□□ -2.46
VPS50-217ENST00000485140 TMEM141Q96I45 108 aa-0.33□□□□□ -2.46
VPS50-217ENST00000485140 BPESC1Q9GZL8 116 aa-0.33□□□□□ -2.46
VPS50-217ENST00000485140 BET1LQ9NYM9 111 aa-0.33□□□□□ -2.46
VPS50-217ENST00000485140 MAP2P11137 1827 aaKnown RBP-0.34□□□□□ -2.46
VPS50-217ENST00000485140 ZCCHC6Q5VYS8 1495 aaKnown RBP-0.34□□□□□ -2.46
VPS50-217ENST00000485140 DLEC1Q9Y238 1755 aa-0.34□□□□□ -2.46
VPS50-217ENST00000485140 IGHV1-24A0A0C4DH33 117 aa-0.34□□□□□ -2.46
VPS50-217ENST00000485140 TRBV10-1A0A0K0K1A3 114 aa-0.34□□□□□ -2.46
VPS50-217ENST00000485140 H7BYZ3 331 aa-0.34□□□□□ -2.46
VPS50-217ENST00000485140 SOGA1O94964 1423 aa-0.34□□□□□ -2.46
VPS50-217ENST00000485140 OR5A2Q8NGI9 324 aa-0.34□□□□□ -2.46
VPS50-217ENST00000485140 BOLA2Q9H3K6 86 aa-0.34□□□□□ -2.46
VPS50-217ENST00000485140 CPDO75976 1380 aa-0.34□□□□□ -2.46
VPS50-217ENST00000485140 CADP27708 2225 aa-0.34□□□□□ -2.46
VPS50-217ENST00000485140 MED13LQ71F56 2210 aa-0.34□□□□□ -2.46
VPS50-217ENST00000485140 MYH3P11055 1940 aa-0.34□□□□□ -2.46
VPS50-217ENST00000485140 TRBV7-6A0A0J9YX20 115 aa-0.35□□□□□ -2.47
VPS50-217ENST00000485140 PNMA8CA0A1B0GUJ8 204 aa-0.35□□□□□ -2.47
VPS50-217ENST00000485140 E7EQ34 232 aa-0.35□□□□□ -2.47
VPS50-217ENST00000485140 CRYGSP22914 178 aa-0.35□□□□□ -2.47
VPS50-217ENST00000485140 TRIQKQ629K1 86 aa-0.35□□□□□ -2.47
VPS50-217ENST00000485140 CDK13Q14004 1512 aaKnown RBP-0.35□□□□□ -2.47
VPS50-217ENST00000485140 ZCCHC11Q5TAX3 1644 aaKnown RBP-0.35□□□□□ -2.47
VPS50-217ENST00000485140 FAM135BQ49AJ0 1406 aa-0.36□□□□□ -2.47
VPS50-217ENST00000485140 HMCN2Q8NDA2 5059 aa-0.36□□□□□ -2.47
VPS50-217ENST00000485140 ZNF670-ZNF695F2Z2N8 137 aa-0.36□□□□□ -2.47
VPS50-217ENST00000485140 HBDP02042 147 aa-0.36□□□□□ -2.47
VPS50-217ENST00000485140 PYYP10082 97 aa-0.36□□□□□ -2.47
VPS50-217ENST00000485140 ADCYAP1P18509 176 aa-0.36□□□□□ -2.47
VPS50-217ENST00000485140 STX12Q86Y82 276 aa-0.36□□□□□ -2.47
VPS50-217ENST00000485140 OR4S1Q8NGB4 309 aa-0.36□□□□□ -2.47
VPS50-217ENST00000485140 NAT14Q8WUY8 206 aa-0.36□□□□□ -2.47
VPS50-217ENST00000485140 PPDPFLQ8WWR9 84 aa-0.36□□□□□ -2.47
VPS50-217ENST00000485140 ROCK1Q13464 1354 aa-0.36□□□□□ -2.47
VPS50-217ENST00000485140 SYNMO15061 1565 aa-0.36□□□□□ -2.47
VPS50-217ENST00000485140 PTPN13Q12923 2485 aa-0.37□□□□□ -2.47
VPS50-217ENST00000485140 NCOR1O75376 2440 aa-0.37□□□□□ -2.47
VPS50-217ENST00000485140 OR2H2O95918 312 aa-0.37□□□□□ -2.47
VPS50-217ENST00000485140 OTOSQ8NHW6 89 aa-0.37□□□□□ -2.47
VPS50-217ENST00000485140 GID8Q9NWU2 228 aa-0.37□□□□□ -2.47
VPS50-217ENST00000485140 MED31Q9Y3C7 131 aa-0.37□□□□□ -2.47
VPS50-217ENST00000485140 A2MP01023 1474 aa-0.37□□□□□ -2.47
VPS50-217ENST00000485140 TNS1Q9HBL0 1735 aaKnown RBP-0.38□□□□□ -2.47
VPS50-217ENST00000485140 FLNAP21333 2647 aaKnown RBP-0.38□□□□□ -2.47
VPS50-217ENST00000485140 RBAKDNA6NC62 111 aa-0.38□□□□□ -2.47
VPS50-217ENST00000485140 UQCRQO14949 82 aa-0.38□□□□□ -2.47
VPS50-217ENST00000485140 APODP05090 189 aa-0.38□□□□□ -2.47
VPS50-217ENST00000485140 NMBP08949 121 aa-0.38□□□□□ -2.47
VPS50-217ENST00000485140 PCBD1P61457 104 aa-0.38□□□□□ -2.47
VPS50-217ENST00000485140 EMX2Q04743 252 aa-0.38□□□□□ -2.47
VPS50-217ENST00000485140 TMEM78Q5T7P6 136 aa-0.38□□□□□ -2.47
VPS50-217ENST00000485140 HOPXQ9BPY8 73 aaPredicted RBP-0.38□□□□□ -2.47
VPS50-217ENST00000485140 ATPIF1Q9UII2 106 aa-0.38□□□□□ -2.47
VPS50-217ENST00000485140 MYH1P12882 1939 aa-0.38□□□□□ -2.47
VPS50-217ENST00000485140 PTPRGP23470 1445 aa-0.38□□□□□ -2.47
VPS50-217ENST00000485140 TRAV17A0A0B4J275 112 aa-0.39□□□□□ -2.47
VPS50-217ENST00000485140 LOC107984640A0A0U1RRK4 108 aa-0.39□□□□□ -2.47
VPS50-217ENST00000485140 CFDP00746 253 aaPredicted RBP-0.39□□□□□ -2.47
VPS50-217ENST00000485140 SMIM11BQ8TCY0 68 aa-0.39□□□□□ -2.47
VPS50-217ENST00000485140 BRK1Q8WUW1 75 aa-0.39□□□□□ -2.47
VPS50-217ENST00000485140 THEM6Q8WUY1 208 aa-0.39□□□□□ -2.47
VPS50-217ENST00000485140 CBLN4Q9NTU7 201 aa-0.39□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms