RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SPANXN1Q5VSR9 72 aa14.47□□□□□ -0.09
VIM-203ENST00000469543 RHPN1-AS1Q9BWJ2 59 aa14.47□□□□□ -0.09
VIM-203ENST00000469543 CCDC168Q8NDH2 2452 aa14.47□□□□□ -0.09
VIM-203ENST00000469543 CRIP2P52943 208 aaPredicted RBP14.47□□□□□ -0.09
VIM-203ENST00000469543 NPFFR1Q9GZQ6 430 aa14.47□□□□□ -0.09
VIM-203ENST00000469543 NDUFA4O00483 81 aa14.46□□□□□ -0.09
VIM-203ENST00000469543 SRSF2Q01130 221 aaKnown RBP14.46□□□□□ -0.09
VIM-203ENST00000469543 ZFAND2AQ8N6M9 145 aa14.46□□□□□ -0.09
VIM-203ENST00000469543 MAP1LC3AQ9H492 121 aa14.46□□□□□ -0.09
VIM-203ENST00000469543 M0R381 172 aa14.46□□□□□ -0.1
VIM-203ENST00000469543 NDUFS8O00217 210 aa14.46□□□□□ -0.1
VIM-203ENST00000469543 SOCS3O14543 225 aa14.46□□□□□ -0.1
VIM-203ENST00000469543 DEFB104AQ8WTQ1 72 aa14.46□□□□□ -0.1
VIM-203ENST00000469543 APCP25054 2843 aa14.45□□□□□ -0.1
VIM-203ENST00000469543 NIPBLQ6KC79 2804 aaeCLIP14.45□□□□□ -0.12e-7■■□□□ 12.5
VIM-203ENST00000469543 CCL25O15444 150 aa14.45□□□□□ -0.1
VIM-203ENST00000469543 GNRH2O43555 120 aa14.45□□□□□ -0.1
VIM-203ENST00000469543 RNASE4P34096 147 aaKnown RBP14.45□□□□□ -0.1
VIM-203ENST00000469543 DEFB112Q30KQ8 113 aa14.45□□□□□ -0.1
VIM-203ENST00000469543 BVES-AS1Q5T3Y7 98 aa14.45□□□□□ -0.1
VIM-203ENST00000469543 C2orf91Q6ZV80 131 aa14.45□□□□□ -0.1
VIM-203ENST00000469543 B4DSR2 109 aa14.44□□□□□ -0.1
VIM-203ENST00000469543 TMEM158Q8WZ71 300 aa14.44□□□□□ -0.1
VIM-203ENST00000469543 TTTY13Q9BZ97 58 aa14.44□□□□□ -0.1
VIM-203ENST00000469543 IGLV1-40P01703 118 aa14.43□□□□□ -0.1
VIM-203ENST00000469543 GAGE1Q13065 139 aa14.43□□□□□ -0.1
VIM-203ENST00000469543 C9orf139Q6ZV77 190 aa14.43□□□□□ -0.1
VIM-203ENST00000469543 BBC3Q96PG8 261 aaPredicted RBP14.43□□□□□ -0.1
VIM-203ENST00000469543 COX11Q9Y6N1 276 aa14.43□□□□□ -0.1
VIM-203ENST00000469543 COX8AP10176 69 aa14.43□□□□□ -0.1
VIM-203ENST00000469543 PCP2Q8IVA1 136 aa14.43□□□□□ -0.1
VIM-203ENST00000469543 OR2K2Q8NGT1 345 aa14.42□□□□□ -0.1
VIM-203ENST00000469543 USMG5Q96IX5 58 aa14.42□□□□□ -0.1
VIM-203ENST00000469543 MS4A6AQ9H2W1 248 aa14.42□□□□□ -0.1
VIM-203ENST00000469543 ANXA2RQ3ZCQ2 193 aa14.42□□□□□ -0.1
VIM-203ENST00000469543 OR10J6PQ8NGY7 276 aa14.42□□□□□ -0.1
VIM-203ENST00000469543 MRPL53Q96EL3 112 aaKnown RBP14.42□□□□□ -0.1
VIM-203ENST00000469543 MUC4Q99102 2169 aa14.41□□□□□ -0.1
VIM-203ENST00000469543 TGFAP01135 160 aa14.41□□□□□ -0.1
VIM-203ENST00000469543 NRACQ8N912 160 aa14.41□□□□□ -0.1
VIM-203ENST00000469543 PPBPP02775 128 aa14.41□□□□□ -0.1
VIM-203ENST00000469543 FGF6P10767 208 aa14.41□□□□□ -0.1
VIM-203ENST00000469543 C14orf178Q8N769 122 aaPredicted RBP14.41□□□□□ -0.1
VIM-203ENST00000469543 CHD6Q8TD26 2715 aa14.41□□□□□ -0.1
VIM-203ENST00000469543 IGLV2-18A0A075B6J9 118 aa14.4□□□□□ -0.1
VIM-203ENST00000469543 CBY3A6NI87 242 aa14.4□□□□□ -0.1
VIM-203ENST00000469543 PRSS1P07477 247 aa14.4□□□□□ -0.1
VIM-203ENST00000469543 NMUP48645 174 aa14.4□□□□□ -0.1
VIM-203ENST00000469543 LGALS9BQ3B8N2 356 aa14.4□□□□□ -0.1
VIM-203ENST00000469543 LGALS9CQ6DKI2 356 aa14.4□□□□□ -0.1
VIM-203ENST00000469543 HIST2H2BDQ6DRA6 164 aa14.4□□□□□ -0.1
VIM-203ENST00000469543 DUX5Q96PT3 197 aa14.4□□□□□ -0.1
VIM-203ENST00000469543 KRTAP10-9P60411 292 aa14.39□□□□□ -0.11
VIM-203ENST00000469543 DAZ1Q9NQZ3 744 aaKnown RBP14.39□□□□□ -0.11
VIM-203ENST00000469543 CD5LO43866 347 aa14.39□□□□□ -0.11
VIM-203ENST00000469543 IGKV3-20P01619 116 aa14.39□□□□□ -0.11
VIM-203ENST00000469543 S100A4P26447 101 aaKnown RBP14.39□□□□□ -0.11
VIM-203ENST00000469543 FCER1GP30273 86 aa14.39□□□□□ -0.11
VIM-203ENST00000469543 PTTG1IPP53801 180 aa14.39□□□□□ -0.11
VIM-203ENST00000469543 CFHR3Q02985 330 aa14.39□□□□□ -0.11
VIM-203ENST00000469543 IGKV2D-26A0A0A0MRZ7 120 aa14.38□□□□□ -0.11
VIM-203ENST00000469543 TAX1BP3O14907 124 aa14.38□□□□□ -0.11
VIM-203ENST00000469543 LINC00477Q96M19 166 aa14.38□□□□□ -0.11
VIM-203ENST00000469543 RPL39LQ96EH5 51 aaKnown RBP14.38□□□□□ -0.11
VIM-203ENST00000469543 FOSL1P15407 271 aa14.38□□□□□ -0.11
VIM-203ENST00000469543 NXT2Q9NPJ8 142 aaKnown RBP14.38□□□□□ -0.11
VIM-203ENST00000469543 PEF1Q9UBV8 284 aaKnown RBP14.38□□□□□ -0.11
VIM-203ENST00000469543 SMIM17P0DL12 118 aa14.37□□□□□ -0.11
VIM-203ENST00000469543 ORAOV1Q8WV07 137 aa14.37□□□□□ -0.11
VIM-203ENST00000469543 ATP6V0BQ99437 205 aa14.37□□□□□ -0.11
VIM-203ENST00000469543 SMPXQ9UHP9 88 aa14.37□□□□□ -0.11
VIM-203ENST00000469543 RNF223E7ERA6 249 aa14.37□□□□□ -0.11
VIM-203ENST00000469543 SRSF1Q07955 248 aaKnown RBP eCLIP14.37□□□□□ -0.11
VIM-203ENST00000469543 SMIM15Q7Z3B0 74 aa14.37□□□□□ -0.11
VIM-203ENST00000469543 Q8N8P6 123 aa14.37□□□□□ -0.11
VIM-203ENST00000469543 FOXC2Q99958 501 aa14.37□□□□□ -0.11
VIM-203ENST00000469543 PPP1R14DQ9NXH3 145 aa14.37□□□□□ -0.11
VIM-203ENST00000469543 PSMB8P28062 276 aa14.36□□□□□ -0.11
VIM-203ENST00000469543 ODF1Q14990 250 aa14.36□□□□□ -0.11
VIM-203ENST00000469543 JPT2Q9H910 190 aa14.36□□□□□ -0.11
VIM-203ENST00000469543 HHLA3Q9XRX5 114 aa14.36□□□□□ -0.11
VIM-203ENST00000469543 A0A0G2JLM5 398 aa14.36□□□□□ -0.11
VIM-203ENST00000469543 C7orf71A4D174 169 aa14.36□□□□□ -0.11
VIM-203ENST00000469543 PHLDA3Q9Y5J5 127 aa14.36□□□□□ -0.11
VIM-203ENST00000469543 OVOL1O14753 267 aa14.35□□□□□ -0.11
VIM-203ENST00000469543 TRAV21A0A0B4J279 112 aa14.35□□□□□ -0.11
VIM-203ENST00000469543 RNASE3P12724 160 aaKnown RBP14.35□□□□□ -0.11
VIM-203ENST00000469543 C12orf54Q6X4T0 127 aa14.35□□□□□ -0.11
VIM-203ENST00000469543 PRRC2AP48634 2157 aaKnown RBP14.34□□□□□ -0.11
VIM-203ENST00000469543 ITPR3Q14573 2671 aa14.34□□□□□ -0.11
VIM-203ENST00000469543 ZNF688P0C7X2 276 aa14.34□□□□□ -0.11
VIM-203ENST00000469543 VAMP3Q15836 100 aa14.34□□□□□ -0.11
VIM-203ENST00000469543 AKAP9Q99996 3911 aa14.34□□□□□ -0.11
VIM-203ENST00000469543 IGHV4-4A0A075B6R2 117 aa14.34□□□□□ -0.11
VIM-203ENST00000469543 LINC01546A6NGU7 62 aa14.34□□□□□ -0.11
VIM-203ENST00000469543 H3BUA1 57 aa14.34□□□□□ -0.11
VIM-203ENST00000469543 NEGR1Q7Z3B1 354 aa14.34□□□□□ -0.11
VIM-203ENST00000469543 DEFB125Q8N687 156 aa14.34□□□□□ -0.11
VIM-203ENST00000469543 DCANP1Q8TF63 244 aa14.34□□□□□ -0.11
VIM-203ENST00000469543 NAA38Q9BRA0 125 aaKnown RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms