RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.21□□□□□ -1.1
CUX1-205ENST00000425244 EEF1AKMT3Q96AZ1 226 aa8.21□□□□□ -1.1
CUX1-205ENST00000425244 OR1N2Q8NGR9 330 aa8.21□□□□□ -1.1
CUX1-205ENST00000425244 SPXQ9BT56 116 aa8.21□□□□□ -1.1
CUX1-205ENST00000425244 MTORP42345 2549 aa8.2□□□□□ -1.1
CUX1-205ENST00000425244 CLPSL1A2RUU4 121 aa8.2□□□□□ -1.1
CUX1-205ENST00000425244 SNAI2O43623 268 aa8.2□□□□□ -1.1
CUX1-205ENST00000425244 NPYP01303 97 aa8.2□□□□□ -1.1
CUX1-205ENST00000425244 MPV17L2Q567V2 206 aa8.2□□□□□ -1.1
CUX1-205ENST00000425244 SHISA2Q6UWI4 295 aa8.2□□□□□ -1.1
CUX1-205ENST00000425244 METTL26Q96S19 204 aa8.2□□□□□ -1.1
CUX1-205ENST00000425244 FBLL1A6NHQ2 334 aaKnown RBP8.2□□□□□ -1.1
CUX1-205ENST00000425244 FABP5P3A8MUU1 101 aa8.2□□□□□ -1.1
CUX1-205ENST00000425244 LINC01545Q5VT33 79 aa8.2□□□□□ -1.1
CUX1-205ENST00000425244 WFDC3Q8IUB2 231 aa8.2□□□□□ -1.1
CUX1-205ENST00000425244 C5orf56Q8N8D9 126 aa8.2□□□□□ -1.1
CUX1-205ENST00000425244 TAX1BP3O14907 124 aa8.19□□□□□ -1.1
CUX1-205ENST00000425244 NUDT3O95989 172 aa8.19□□□□□ -1.1
CUX1-205ENST00000425244 RAB9AP51151 201 aa8.19□□□□□ -1.1
CUX1-205ENST00000425244 ATP5G2Q06055 141 aa8.19□□□□□ -1.1
CUX1-205ENST00000425244 AMMECR1LQ6DCA0 310 aa8.19□□□□□ -1.1
CUX1-205ENST00000425244 A0A096LNJ9 63 aa8.19□□□□□ -1.1
CUX1-205ENST00000425244 H3BUX3 64 aa8.19□□□□□ -1.1
CUX1-205ENST00000425244 IGLC6P0CF74 106 aa8.19□□□□□ -1.1
CUX1-205ENST00000425244 COX8CQ7Z4L0 72 aa8.19□□□□□ -1.1
CUX1-205ENST00000425244 U3KQK5 164 aa8.19□□□□□ -1.1
CUX1-205ENST00000425244 AGPAT4-IT1Q9H0P7 198 aa8.18□□□□□ -1.1
CUX1-205ENST00000425244 SCRT2Q9NQ03 307 aa8.18□□□□□ -1.1
CUX1-205ENST00000425244 TRAV41A0A0B4J266 112 aa8.18□□□□□ -1.1
CUX1-205ENST00000425244 GAS8-AS1O95177 125 aa8.18□□□□□ -1.1
CUX1-205ENST00000425244 EVI2AP22794 236 aa8.18□□□□□ -1.1
CUX1-205ENST00000425244 GATA3P23771 443 aa8.18□□□□□ -1.1
CUX1-205ENST00000425244 C8orf86Q6ZUL3 223 aa8.18□□□□□ -1.1
CUX1-205ENST00000425244 SLC50A1Q9BRV3 221 aa8.18□□□□□ -1.1
CUX1-205ENST00000425244 A0A087X0K7 114 aa8.17□□□□□ -1.1
CUX1-205ENST00000425244 TRBV7-1A0A0A6YYK4 115 aa8.17□□□□□ -1.1
CUX1-205ENST00000425244 TRGV3P03979 118 aa8.17□□□□□ -1.1
CUX1-205ENST00000425244 CACNG7P62955 275 aa8.17□□□□□ -1.1
CUX1-205ENST00000425244 TMEM78Q5T7P6 136 aa8.17□□□□□ -1.1
CUX1-205ENST00000425244 ZNF575Q86XF7 245 aa8.17□□□□□ -1.1
CUX1-205ENST00000425244 MOB4Q9Y3A3 225 aa8.17□□□□□ -1.1
CUX1-205ENST00000425244 SETXQ7Z333 2677 aaKnown RBP8.17□□□□□ -1.1
CUX1-205ENST00000425244 TRAV8-2A0A0B4J237 113 aa8.17□□□□□ -1.1
CUX1-205ENST00000425244 HBDP02042 147 aa8.17□□□□□ -1.1
CUX1-205ENST00000425244 AZU1P20160 251 aa8.17□□□□□ -1.1
CUX1-205ENST00000425244 C18orf15Q96N68 181 aa8.17□□□□□ -1.1
CUX1-205ENST00000425244 DEFB112Q30KQ8 113 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 Q6ZQT7 251 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 C16orf92Q96LL3 132 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 DUX5Q96PT3 197 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 GATA1P15976 413 aaPredicted RBP8.16□□□□□ -1.1
CUX1-205ENST00000425244 PIFOQ8TCI5 191 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 MS4A6AQ9H2W1 248 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 PGPEP1Q9NXJ5 209 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 C11orf21Q9P2W6 132 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 SELENOKQ9Y6D0 94 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 IGKV3D-20A0A0C4DH25 116 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 TRBV12-3P01733 135 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 IGHV3-11P01762 117 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 ARL3P36405 182 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 CKS1BP61024 79 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 FOXE3Q13461 319 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 LINC01559Q495D7 138 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 RNF185Q96GF1 192 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 MAP1LC3AQ9H492 121 aa8.16□□□□□ -1.1
CUX1-205ENST00000425244 IGHV4-59P01825 116 aa8.15□□□□□ -1.1
CUX1-205ENST00000425244 UFC1Q9Y3C8 167 aa8.15□□□□□ -1.1
CUX1-205ENST00000425244 SETD2Q9BYW2 2564 aaPredicted RBP8.15□□□□□ -1.11
CUX1-205ENST00000425244 IGKV3-7A0A075B6H7 116 aa8.15□□□□□ -1.11
CUX1-205ENST00000425244 RBAKDNA6NC62 111 aa8.15□□□□□ -1.11
CUX1-205ENST00000425244 RPL11P62913 178 aaKnown RBP8.15□□□□□ -1.11
CUX1-205ENST00000425244 SMAGPQ0VAQ4 97 aa8.15□□□□□ -1.11
CUX1-205ENST00000425244 BVES-AS1Q5T3Y7 98 aa8.15□□□□□ -1.11
CUX1-205ENST00000425244 IFI27L1Q96BM0 104 aa8.15□□□□□ -1.11
CUX1-205ENST00000425244 J3QLI3 93 aa8.14□□□□□ -1.11
CUX1-205ENST00000425244 UNQ9165/PRO28630Q6UXU0 137 aa8.14□□□□□ -1.11
CUX1-205ENST00000425244 SMR3AQ99954 134 aa8.14□□□□□ -1.11
CUX1-205ENST00000425244 TNFRSF6BO95407 300 aa8.14□□□□□ -1.11
CUX1-205ENST00000425244 COX8AP10176 69 aa8.14□□□□□ -1.11
CUX1-205ENST00000425244 LEPP41159 167 aa8.14□□□□□ -1.11
CUX1-205ENST00000425244 DEFB1P60022 68 aa8.14□□□□□ -1.11
CUX1-205ENST00000425244 LCNL1Q6ZST4 164 aa8.14□□□□□ -1.11
CUX1-205ENST00000425244 GTSF1LQ9H1H1 148 aa8.14□□□□□ -1.11
CUX1-205ENST00000425244 TRAV26-2A0A0B4J265 109 aa8.13□□□□□ -1.11
CUX1-205ENST00000425244 BLCAPP62952 87 aa8.13□□□□□ -1.11
CUX1-205ENST00000425244 SRSF2Q01130 221 aaKnown RBP8.13□□□□□ -1.11
CUX1-205ENST00000425244 HIST1H1AQ02539 215 aaPredicted RBP8.13□□□□□ -1.11
CUX1-205ENST00000425244 KLK9Q2XQG4 91 aa8.13□□□□□ -1.11
CUX1-205ENST00000425244 C12orf54Q6X4T0 127 aa8.13□□□□□ -1.11
CUX1-205ENST00000425244 DEFB125Q8N687 156 aa8.13□□□□□ -1.11
CUX1-205ENST00000425244 SIGMAR1Q99720 223 aa8.13□□□□□ -1.11
CUX1-205ENST00000425244 FOXC2Q99958 501 aa8.13□□□□□ -1.11
CUX1-205ENST00000425244 KLK9Q9UKQ9 250 aa8.13□□□□□ -1.11
CUX1-205ENST00000425244 IGF1P05019 195 aa8.13□□□□□ -1.11
CUX1-205ENST00000425244 C20orf173Q96LM9 149 aa8.13□□□□□ -1.11
CUX1-205ENST00000425244 CNFNQ9BYD5 112 aa8.13□□□□□ -1.11
CUX1-205ENST00000425244 TRAV8-6A0A0B4J262 113 aa8.12□□□□□ -1.11
CUX1-205ENST00000425244 FAM223BA6NKX1 122 aa8.12□□□□□ -1.11
CUX1-205ENST00000425244 SPRY2O43597 315 aa8.12□□□□□ -1.11
CUX1-205ENST00000425244 SPANXN1Q5VSR9 72 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms