RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 KIR2DL4Q99706 377 aa10.73□□□□□ -0.69
SDC1-202ENST00000381150 IGKV3-7A0A075B6H7 116 aa10.73□□□□□ -0.69
SDC1-202ENST00000381150 PRSS29PA6NIE9 313 aa10.73□□□□□ -0.69
SDC1-202ENST00000381150 B5MCH6 92 aa10.73□□□□□ -0.69
SDC1-202ENST00000381150 C1orf122Q6ZSJ8 110 aa10.73□□□□□ -0.69
SDC1-202ENST00000381150 SMPXQ9UHP9 88 aa10.73□□□□□ -0.69
SDC1-202ENST00000381150 HRNRQ86YZ3 2850 aaPredicted RBP10.73□□□□□ -0.69
SDC1-202ENST00000381150 XGP55808 180 aa10.72□□□□□ -0.69
SDC1-202ENST00000381150 DYNAPQ8N1N2 210 aa10.72□□□□□ -0.69
SDC1-202ENST00000381150 CFHR4Q92496 578 aa10.72□□□□□ -0.69
SDC1-202ENST00000381150 DLX4Q92988 240 aaPredicted RBP10.72□□□□□ -0.69
SDC1-202ENST00000381150 FAM90A27PA6NNH2 459 aa10.72□□□□□ -0.69
SDC1-202ENST00000381150 ZNF672Q499Z4 452 aaPredicted RBP10.72□□□□□ -0.69
SDC1-202ENST00000381150 NFE4Q86UQ8 179 aa10.72□□□□□ -0.69
SDC1-202ENST00000381150 BUB1B-PAK6H3BSN5 160 aa10.71□□□□□ -0.69
SDC1-202ENST00000381150 ADORA2A-AS1P86434 159 aa10.71□□□□□ -0.69
SDC1-202ENST00000381150 TRBV20-1A0A075B6N2 111 aa10.71□□□□□ -0.69
SDC1-202ENST00000381150 SLC25A16P16260 332 aa10.71□□□□□ -0.69
SDC1-202ENST00000381150 S100A4P26447 101 aaKnown RBP10.71□□□□□ -0.69
SDC1-202ENST00000381150 MFAP4P55083 255 aa10.71□□□□□ -0.69
SDC1-202ENST00000381150 LYPD1Q8N2G4 141 aa10.71□□□□□ -0.69
SDC1-202ENST00000381150 BEX4Q9NWD9 120 aaPredicted RBP10.71□□□□□ -0.69
SDC1-202ENST00000381150 DOPEY2Q9Y3R5 2298 aa10.71□□□□□ -0.7
SDC1-202ENST00000381150 MYMXA0A1B0GTQ4 84 aa10.71□□□□□ -0.7
SDC1-202ENST00000381150 LY6LH3BQJ8 138 aa10.71□□□□□ -0.7
SDC1-202ENST00000381150 LY6HO94772 140 aa10.71□□□□□ -0.7
SDC1-202ENST00000381150 HOXB4P17483 251 aaPredicted RBP10.71□□□□□ -0.7
SDC1-202ENST00000381150 PAX8Q06710 450 aa10.71□□□□□ -0.7
SDC1-202ENST00000381150 TMEM78Q5T7P6 136 aa10.71□□□□□ -0.7
SDC1-202ENST00000381150 RAX2Q96IS3 184 aa10.71□□□□□ -0.7
SDC1-202ENST00000381150 ZNF48Q96MX3 618 aaPredicted RBP10.71□□□□□ -0.7
SDC1-202ENST00000381150 CCL21O00585 134 aa10.7□□□□□ -0.7
SDC1-202ENST00000381150 PRADC1Q9BSG0 188 aa10.7□□□□□ -0.7
SDC1-202ENST00000381150 C21orf62Q9NYP8 219 aa10.7□□□□□ -0.7
SDC1-202ENST00000381150 Q8N8P6 123 aa10.7□□□□□ -0.7
SDC1-202ENST00000381150 C1QTNF4Q9BXJ3 329 aa10.7□□□□□ -0.7
SDC1-202ENST00000381150 KLRD1Q13241 179 aa10.69□□□□□ -0.7
SDC1-202ENST00000381150 LY6G5BQ8NDX9 201 aa10.69□□□□□ -0.7
SDC1-202ENST00000381150 SVIPQ8NHG7 77 aa10.69□□□□□ -0.7
SDC1-202ENST00000381150 IGF2RP11717 2491 aa10.69□□□□□ -0.7
SDC1-202ENST00000381150 A0A087WX48 190 aa10.69□□□□□ -0.7
SDC1-202ENST00000381150 SRSF1Q07955 248 aaKnown RBP eCLIP10.69□□□□□ -0.7
SDC1-202ENST00000381150 Q1RN00 199 aa10.69□□□□□ -0.7
SDC1-202ENST00000381150 Q6ZUT4 128 aa10.69□□□□□ -0.7
SDC1-202ENST00000381150 PLEKHB2Q96CS7 222 aa10.69□□□□□ -0.7
SDC1-202ENST00000381150 TRAV8-2A0A0B4J237 113 aa10.68□□□□□ -0.7
SDC1-202ENST00000381150 KLRB1Q12918 225 aa10.68□□□□□ -0.7
SDC1-202ENST00000381150 ECSCRQ19T08 205 aa10.68□□□□□ -0.7
SDC1-202ENST00000381150 IGHV3-64A0A075B6Q5 118 aa10.68□□□□□ -0.7
SDC1-202ENST00000381150 H7C1H1 209 aa10.68□□□□□ -0.7
SDC1-202ENST00000381150 IGLC6P0CF74 106 aa10.68□□□□□ -0.7
SDC1-202ENST00000381150 UCNP55089 124 aa10.68□□□□□ -0.7
SDC1-202ENST00000381150 PLNP26678 52 aa10.67□□□□□ -0.7
SDC1-202ENST00000381150 RPL11P62913 178 aaKnown RBP10.67□□□□□ -0.7
SDC1-202ENST00000381150 TCTEX1D4Q5JR98 221 aa10.67□□□□□ -0.7
SDC1-202ENST00000381150 MORN3Q6PF18 240 aaPredicted RBP10.67□□□□□ -0.7
SDC1-202ENST00000381150 TEX29Q8N6K0 151 aa10.67□□□□□ -0.7
SDC1-202ENST00000381150 C14orf178Q8N769 122 aaPredicted RBP10.67□□□□□ -0.7
SDC1-202ENST00000381150 GATD1Q8NB37 220 aa10.67□□□□□ -0.7
SDC1-202ENST00000381150 F8VRH5 84 aa10.67□□□□□ -0.7
SDC1-202ENST00000381150 FHL3Q13643 280 aa10.67□□□□□ -0.7
SDC1-202ENST00000381150 CDIP1Q9H305 208 aa10.67□□□□□ -0.7
SDC1-202ENST00000381150 TMEM238LA0A1B0GVL6 79 aa10.66□□□□□ -0.7
SDC1-202ENST00000381150 A6NJY4 79 aa10.66□□□□□ -0.7
SDC1-202ENST00000381150 LGALS1P09382 135 aaKnown RBP10.66□□□□□ -0.7
SDC1-202ENST00000381150 SMCPP49901 116 aaPredicted RBP10.66□□□□□ -0.7
SDC1-202ENST00000381150 TMEM170BQ5T4T1 132 aa10.66□□□□□ -0.7
SDC1-202ENST00000381150 PRO0461Q9UI25 63 aa10.66□□□□□ -0.7
SDC1-202ENST00000381150 NDPQ00604 133 aa10.66□□□□□ -0.7
SDC1-202ENST00000381150 C11orf71Q6IPW1 123 aa10.66□□□□□ -0.7
SDC1-202ENST00000381150 RPL39LQ96EH5 51 aaKnown RBP10.66□□□□□ -0.7
SDC1-202ENST00000381150 ZMAT4Q9H898 229 aa10.66□□□□□ -0.7
SDC1-202ENST00000381150 IGKV3D-20A0A0C4DH25 116 aa10.66□□□□□ -0.7
SDC1-202ENST00000381150 NBR2O15453 112 aa10.66□□□□□ -0.7
SDC1-202ENST00000381150 DEFB1P60022 68 aa10.66□□□□□ -0.7
SDC1-202ENST00000381150 A8MWV9 139 aa10.65□□□□□ -0.7
SDC1-202ENST00000381150 MRPS12O15235 138 aaKnown RBP10.65□□□□□ -0.7
SDC1-202ENST00000381150 C11orf21Q9P2W6 132 aa10.65□□□□□ -0.7
SDC1-202ENST00000381150 TRBV6-1A0A0K0K1D8 114 aa10.65□□□□□ -0.7
SDC1-202ENST00000381150 CLEC3BP05452 202 aa10.65□□□□□ -0.7
SDC1-202ENST00000381150 PDE6HQ13956 83 aa10.65□□□□□ -0.7
SDC1-202ENST00000381150 RAB1BQ9H0U4 201 aa10.65□□□□□ -0.7
SDC1-202ENST00000381150 ZFHX3Q15911 3703 aa10.64□□□□□ -0.71
SDC1-202ENST00000381150 TRBV7-3A0A075B6L6 115 aa10.64□□□□□ -0.71
SDC1-202ENST00000381150 TSPAN13O95857 204 aa10.64□□□□□ -0.71
SDC1-202ENST00000381150 ZFAND6Q6FIF0 208 aa10.64□□□□□ -0.71
SDC1-202ENST00000381150 SETD2Q9BYW2 2564 aaPredicted RBP10.64□□□□□ -0.71
SDC1-202ENST00000381150 C9JAW5 83 aa10.64□□□□□ -0.71
SDC1-202ENST00000381150 CFAP126Q5VTH2 177 aa10.64□□□□□ -0.71
SDC1-202ENST00000381150 C3orf56Q8N813 242 aa10.64□□□□□ -0.71
SDC1-202ENST00000381150 RNF5Q99942 180 aa10.64□□□□□ -0.71
SDC1-202ENST00000381150 SMAD5-AS1Q9Y6J3 95 aa10.64□□□□□ -0.71
SDC1-202ENST00000381150 SCGB2A1O75556 95 aa10.63□□□□□ -0.71
SDC1-202ENST00000381150 OR11H6Q8NGC7 330 aa10.63□□□□□ -0.71
SDC1-202ENST00000381150 AGPAT4-IT1Q9H0P7 198 aa10.63□□□□□ -0.71
SDC1-202ENST00000381150 F5H697 171 aa10.63□□□□□ -0.71
SDC1-202ENST00000381150 TCL1BO95988 128 aa10.63□□□□□ -0.71
SDC1-202ENST00000381150 IGHV4-39P01824 125 aa10.63□□□□□ -0.71
SDC1-202ENST00000381150 CSPG4Q6UVK1 2322 aa10.63□□□□□ -0.71
SDC1-202ENST00000381150 TAL2Q16559 108 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 126 ms