RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 NOTCH3Q9UM47 2321 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 TRAV12-2A0A075B6T6 113 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 LOC105371267A0A1B0GV96 52 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 A0A1B0GXF2 115 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 RBMY1BA6NDE4 496 aaKnown RBP3.07□□□□□ -1.92
MCF2-201ENST00000338585 RBMY1EA6NEQ0 496 aaKnown RBP3.07□□□□□ -1.92
MCF2-201ENST00000338585 SNURFLB1AK76 121 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 GPX1P07203 203 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 RBMY1DP0C7P1 496 aaKnown RBP3.07□□□□□ -1.92
MCF2-201ENST00000338585 ARMS2P0C7Q2 107 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 FXYD7P58549 80 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 RAB4BP61018 213 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 SPINK13Q1W4C9 94 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 ODF3L2Q3SX64 289 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 EBLN2Q6P2I7 272 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 TMEM136Q6ZRR5 245 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 SPAG8Q99932 426 aaPredicted RBP3.07□□□□□ -1.92
MCF2-201ENST00000338585 SSBP4Q9BWG4 385 aaPredicted RBP3.07□□□□□ -1.92
MCF2-201ENST00000338585 GFRA4Q9GZZ7 299 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 NAGKQ9UJ70 344 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 LENEPQ9Y5L5 61 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 TRAPPC1Q9Y5R8 145 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 TRAV2A0A0B4J234 112 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 OR4C46A6NHA9 309 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 KLLNB2CW77 178 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 SPRY2O43597 315 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 IGLV1-51P01701 117 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 CRISP2P16562 243 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 ODF1Q14990 250 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 KIAA1644Q3SXP7 199 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 LYZL1Q6UWQ5 148 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 AMTNQ6UX39 209 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 FOXI2Q6ZQN5 318 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 MRPL18Q9H0U6 180 aaKnown RBP3.06□□□□□ -1.92
MCF2-201ENST00000338585 TRAV12-3A0A0B4J271 114 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 TRAV25A0A0B4J276 109 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 FAM231BA6NCW3 169 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 H3BMM0 161 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 CD7P09564 240 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 IGLC6P0CF74 106 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 FOXA3P55318 350 aaPredicted RBP3.06□□□□□ -1.92
MCF2-201ENST00000338585 NDUFA6P56556 154 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 SNRPEP62304 92 aaKnown RBP3.06□□□□□ -1.92
MCF2-201ENST00000338585 SLAQ13239 276 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 ANXA2RQ3ZCQ2 193 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 GFI1BQ5VTD9 330 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 FER1L6-AS1Q8NA97 138 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 GNB1LQ9BYB4 327 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 WFDC10AQ9H1F0 79 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 MSRB1Q9NZV6 116 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 VWFP04275 2813 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 TRAV21A0A0B4J279 112 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 TRBV7-9A0A0J9YWB2 115 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 A0A1B0GUT8 65 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 RBMY1A1P0DJD3 496 aaKnown RBP3.06□□□□□ -1.92
MCF2-201ENST00000338585 RBMY1CP0DJD4 496 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 HLA-DRB4P13762 266 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 HBBP68871 147 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 RBMY1FQ15415 496 aaKnown RBP3.06□□□□□ -1.92
MCF2-201ENST00000338585 Q6AWC8 147 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 KRTAP4-5Q9BYR2 181 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 TIMM8BQ9Y5J9 83 aaPredicted RBP3.06□□□□□ -1.92
MCF2-201ENST00000338585 HLA-DRB4X5D2U9 266 aa3.06□□□□□ -1.92
MCF2-201ENST00000338585 FBN1P35555 2871 aaKnown RBP3.05□□□□□ -1.92
MCF2-201ENST00000338585 XKRY2A2RUG3 117 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 C7orf71A4D174 169 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 C5orf52A6NGY3 159 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 CRXO43186 299 aaPredicted RBP3.05□□□□□ -1.92
MCF2-201ENST00000338585 GNRH2O43555 120 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 ZNF324O75467 553 aaPredicted RBP3.05□□□□□ -1.92
MCF2-201ENST00000338585 DUSP14O95147 198 aaKnown RBP3.05□□□□□ -1.92
MCF2-201ENST00000338585 S100A6P06703 90 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 CTRLP40313 264 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 LEPP41159 167 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 CDKN1BP46527 198 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 RPS20P60866 119 aaKnown RBP3.05□□□□□ -1.92
MCF2-201ENST00000338585 WDR73Q6P4I2 378 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 ATP5L2Q7Z4Y8 100 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 ODF3Q96PU9 254 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 KRTAP9-8Q9BYQ0 159 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 TP53TG3Q9ULZ0 132 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 A8MTW9 85 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 OR11H12B2RN74 326 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 F2Z2F3 143 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 H3BVH4 76 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 HLA-DQA1P01909 254 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 APCSP02743 223 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 MT-ND6P03923 174 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 PRM2P04554 102 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 NTF3P20783 257 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 PDZD11Q5EBL8 140 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 RASL11AQ6T310 242 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 OR10AG1Q8NH19 301 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 C19orf73Q9NVV2 129 aa3.05□□□□□ -1.92
MCF2-201ENST00000338585 TSPOP30536 169 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 SRIP30626 198 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 RIGQ13278 110 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 TWIST1Q15672 202 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 BEAN1Q3B7T3 259 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 BORCS7Q96B45 105 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms