RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ZFAND2AQ8N6M9 145 aa15.21■□□□□ 0.03
VPS53-201ENST00000291074 TRAV26-2A0A0B4J265 109 aa15.2■□□□□ 0.02
VPS53-201ENST00000291074 PPBPP02775 128 aa15.2■□□□□ 0.02
VPS53-201ENST00000291074 CACNG7P62955 275 aa15.2■□□□□ 0.02
VPS53-201ENST00000291074 SLC25A34Q6PIV7 304 aa15.2■□□□□ 0.02
VPS53-201ENST00000291074 ABCA12Q86UK0 2595 aa15.2■□□□□ 0.02
VPS53-201ENST00000291074 KIR3DS1Q14943 382 aa15.2■□□□□ 0.02
VPS53-201ENST00000291074 ERASQ7Z444 233 aa15.2■□□□□ 0.02
VPS53-201ENST00000291074 OR10J6PQ8NGY7 276 aa15.2■□□□□ 0.02
VPS53-201ENST00000291074 A0A0G2JLM5 398 aa15.2■□□□□ 0.02
VPS53-201ENST00000291074 DSCR9P59020 149 aa15.2■□□□□ 0.02
VPS53-201ENST00000291074 C18orf15Q96N68 181 aa15.2■□□□□ 0.02
VPS53-201ENST00000291074 A0A096LNT2 108 aa15.19■□□□□ 0.02
VPS53-201ENST00000291074 TCTAP57738 103 aa15.19■□□□□ 0.02
VPS53-201ENST00000291074 LINC01356Q8N9X3 169 aa15.19■□□□□ 0.02
VPS53-201ENST00000291074 SLC25A16P16260 332 aa15.19■□□□□ 0.02
VPS53-201ENST00000291074 SPANXN1Q5VSR9 72 aa15.19■□□□□ 0.02
VPS53-201ENST00000291074 UBR5O95071 2799 aaPredicted RBP15.19■□□□□ 0.02
VPS53-201ENST00000291074 MXRA5Q9NR99 2828 aa15.18■□□□□ 0.02
VPS53-201ENST00000291074 IFI27L1Q96BM0 104 aa15.18■□□□□ 0.02
VPS53-201ENST00000291074 LINC00477Q96M19 166 aa15.18■□□□□ 0.02
VPS53-201ENST00000291074 DAZ1Q9NQZ3 744 aaKnown RBP15.18■□□□□ 0.02
VPS53-201ENST00000291074 OVOL1O14753 267 aa15.18■□□□□ 0.02
VPS53-201ENST00000291074 TGFAP01135 160 aa15.18■□□□□ 0.02
VPS53-201ENST00000291074 GATA3P23771 443 aa15.18■□□□□ 0.02
VPS53-201ENST00000291074 MPV17L2Q567V2 206 aa15.18■□□□□ 0.02
VPS53-201ENST00000291074 MS4A6AQ9H2W1 248 aa15.18■□□□□ 0.02
VPS53-201ENST00000291074 PEF1Q9UBV8 284 aaKnown RBP15.17■□□□□ 0.02
VPS53-201ENST00000291074 LENEPQ9Y5L5 61 aa15.17■□□□□ 0.02
VPS53-201ENST00000291074 SNAI2O43623 268 aa15.17■□□□□ 0.02
VPS53-201ENST00000291074 LEPP41159 167 aa15.17■□□□□ 0.02
VPS53-201ENST00000291074 SRSF1Q07955 248 aaKnown RBP eCLIP15.17■□□□□ 0.027e-9■■□□□ 13.7
VPS53-201ENST00000291074 LGALS9BQ3B8N2 356 aa15.16■□□□□ 0.02
VPS53-201ENST00000291074 LGALS9CQ6DKI2 356 aa15.16■□□□□ 0.02
VPS53-201ENST00000291074 SMPXQ9UHP9 88 aa15.16■□□□□ 0.02
VPS53-201ENST00000291074 PSMB8P28062 276 aa15.15■□□□□ 0.02
VPS53-201ENST00000291074 RNASE4P34096 147 aaKnown RBP15.15■□□□□ 0.02
VPS53-201ENST00000291074 OR2K2Q8NGT1 345 aa15.15■□□□□ 0.02
VPS53-201ENST00000291074 COX6B1P14854 86 aa15.15■□□□□ 0.02
VPS53-201ENST00000291074 SMIM15Q7Z3B0 74 aa15.15■□□□□ 0.02
VPS53-201ENST00000291074 NRACQ8N912 160 aa15.14■□□□□ 0.01
VPS53-201ENST00000291074 NXT2Q9NPJ8 142 aaKnown RBP15.14■□□□□ 0.01
VPS53-201ENST00000291074 RNF223E7ERA6 249 aa15.14■□□□□ 0.01
VPS53-201ENST00000291074 M0R381 172 aa15.14■□□□□ 0.01
VPS53-201ENST00000291074 NUDT3O95989 172 aa15.14■□□□□ 0.01
VPS53-201ENST00000291074 ANXA2RQ3ZCQ2 193 aa15.14■□□□□ 0.01
VPS53-201ENST00000291074 CR1P17927 2039 aa15.14■□□□□ 0.01
VPS53-201ENST00000291074 IGHV4-4A0A075B6R2 117 aa15.13■□□□□ 0.01
VPS53-201ENST00000291074 TRAV21A0A0B4J279 112 aa15.13■□□□□ 0.01
VPS53-201ENST00000291074 LINC01546A6NGU7 62 aa15.13■□□□□ 0.01
VPS53-201ENST00000291074 KRTAP10-9P60411 292 aa15.13■□□□□ 0.01
VPS53-201ENST00000291074 ORAOV1Q8WV07 137 aa15.13■□□□□ 0.01
VPS53-201ENST00000291074 DKK2Q9UBU2 259 aa15.13■□□□□ 0.01
VPS53-201ENST00000291074 IGLV2-18A0A075B6J9 118 aa15.13■□□□□ 0.01
VPS53-201ENST00000291074 COX8AP10176 69 aa15.13■□□□□ 0.01
VPS53-201ENST00000291074 CDKN1BP46527 198 aa15.13■□□□□ 0.01
VPS53-201ENST00000291074 UBE2V1Q13404 147 aa15.13■□□□□ 0.01
VPS53-201ENST00000291074 FAM19A4Q96LR4 140 aa15.13■□□□□ 0.01
VPS53-201ENST00000291074 WFDC12Q8WWY7 111 aa15.12■□□□□ 0.01
VPS53-201ENST00000291074 TMEM158Q8WZ71 300 aa15.12■□□□□ 0.01
VPS53-201ENST00000291074 FCER1GP30273 86 aa15.12■□□□□ 0.01
VPS53-201ENST00000291074 Q8N8P6 123 aa15.12■□□□□ 0.01
VPS53-201ENST00000291074 NAV2Q8IVL1 2488 aa15.12■□□□□ 0.01
VPS53-201ENST00000291074 S100A4P26447 101 aaKnown RBP15.11■□□□□ 0.01
VPS53-201ENST00000291074 TEX15Q9BXT5 2789 aa15.11■□□□□ 0.01
VPS53-201ENST00000291074 GNRH2O43555 120 aa15.1■□□□□ 0.01
VPS53-201ENST00000291074 C2orf91Q6ZV80 131 aa15.1■□□□□ 0.01
VPS53-201ENST00000291074 COX11Q9Y6N1 276 aa15.1■□□□□ 0.01
VPS53-201ENST00000291074 BVES-AS1Q5T3Y7 98 aa15.1■□□□□ 0.01
VPS53-201ENST00000291074 EPG5Q9HCE0 2579 aa15.1■□□□□ 0.01
VPS53-201ENST00000291074 CBY3A6NI87 242 aa15.1■□□□□ 0.01
VPS53-201ENST00000291074 ASIPP42127 132 aa15.1■□□□□ 0.01
VPS53-201ENST00000291074 DCANP1Q8TF63 244 aa15.1■□□□□ 0.01
VPS53-201ENST00000291074 MUC4Q99102 2169 aa15.09■□□□□ 0.01
VPS53-201ENST00000291074 FGF6P10767 208 aa15.09■□□□□ 0.01
VPS53-201ENST00000291074 CREBBPQ92793 2442 aa15.09■□□□□ 0.01
VPS53-201ENST00000291074 K7EMT4 169 aa15.09■□□□□ 0.01
VPS53-201ENST00000291074 K7EP13 123 aa15.09■□□□□ 0.01
VPS53-201ENST00000291074 ZNF843Q8N446 348 aa15.09■□□□□ 0.01
VPS53-201ENST00000291074 ZNF580Q9UK33 172 aa15.09■□□□□ 0.01
VPS53-201ENST00000291074 J3QLI3 93 aa15.08■□□□□ 0
VPS53-201ENST00000291074 CD5LO43866 347 aa15.08■□□□□ 0
VPS53-201ENST00000291074 C14orf178Q8N769 122 aaPredicted RBP15.08■□□□□ 0
VPS53-201ENST00000291074 OR4C5Q8NGB2 326 aa15.08■□□□□ 0
VPS53-201ENST00000291074 PHLDA3Q9Y5J5 127 aa15.08■□□□□ 0
VPS53-201ENST00000291074 AGRNO00468 2067 aa15.07■□□□□ 0
VPS53-201ENST00000291074 APRG1Q8IVJ8 170 aa15.07■□□□□ 0
VPS53-201ENST00000291074 SORL1Q92673 2214 aa15.07■□□□□ 0
VPS53-201ENST00000291074 PRSS1P07477 247 aa15.06■□□□□ 0
VPS53-201ENST00000291074 IGHV4-31P0DP07 118 aa15.06■□□□□ 0
VPS53-201ENST00000291074 RNASE3P12724 160 aaKnown RBP15.06■□□□□ 0
VPS53-201ENST00000291074 ODF1Q14990 250 aa15.06■□□□□ 0
VPS53-201ENST00000291074 VPREB3Q9UKI3 123 aa15.06■□□□□ 0
VPS53-201ENST00000291074 ZNF688P0C7X2 276 aa15.05■□□□□ 0
VPS53-201ENST00000291074 SMIM17P0DL12 118 aa15.05■□□□□ 0
VPS53-201ENST00000291074 DPF1Q92782 380 aa15.05■□□□□ 0
VPS53-201ENST00000291074 DUX5Q96PT3 197 aa15.05■□□□□ 0
VPS53-201ENST00000291074 BEX4Q9NWD9 120 aaPredicted RBP15.05■□□□□ 0
VPS53-201ENST00000291074 LAGE3Q14657 143 aa15.05■□□□□ -0
VPS53-201ENST00000291074 RPL39LQ96EH5 51 aaKnown RBP15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms