RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 PRELID1Q9Y255 219 aa7.52□□□□□ -1.21
VPS4B-202ENST00000588059 NBEAP1P0C6P0 100 aa7.51□□□□□ -1.21
VPS4B-202ENST00000588059 CT45A10P0DMU9 189 aa7.51□□□□□ -1.21
VPS4B-202ENST00000588059 GCSHP23434 173 aa7.51□□□□□ -1.21
VPS4B-202ENST00000588059 LEPP41159 167 aa7.51□□□□□ -1.21
VPS4B-202ENST00000588059 ERCC8Q13216 396 aa7.51□□□□□ -1.21
VPS4B-202ENST00000588059 PDE6HQ13956 83 aa7.51□□□□□ -1.21
VPS4B-202ENST00000588059 FAM122CQ6P4D5 195 aa7.51□□□□□ -1.21
VPS4B-202ENST00000588059 MRPL53Q96EL3 112 aaKnown RBP7.51□□□□□ -1.21
VPS4B-202ENST00000588059 SNURFLB1AK76 121 aa7.5□□□□□ -1.21
VPS4B-202ENST00000588059 NPIPB6E9PJ23 425 aa7.5□□□□□ -1.21
VPS4B-202ENST00000588059 EIF3GO75821 320 aaKnown RBP eCLIP7.5□□□□□ -1.21
VPS4B-202ENST00000588059 GIPP09681 153 aaPredicted RBP7.5□□□□□ -1.21
VPS4B-202ENST00000588059 TAS2R45P59539 299 aa7.5□□□□□ -1.21
VPS4B-202ENST00000588059 UBE2L3P68036 154 aaKnown RBP7.5□□□□□ -1.21
VPS4B-202ENST00000588059 ACOT6Q3I5F7 207 aaPredicted RBP7.5□□□□□ -1.21
VPS4B-202ENST00000588059 GFI1BQ5VTD9 330 aa7.5□□□□□ -1.21
VPS4B-202ENST00000588059 Q6ZTI0 123 aa7.5□□□□□ -1.21
VPS4B-202ENST00000588059 NFE4Q86UQ8 179 aa7.5□□□□□ -1.21
VPS4B-202ENST00000588059 CCDC28AQ8IWP9 274 aa7.5□□□□□ -1.21
VPS4B-202ENST00000588059 FXYD5Q96DB9 178 aa7.5□□□□□ -1.21
VPS4B-202ENST00000588059 IGKV2-40A0A087WW87 121 aaPredicted RBP7.49□□□□□ -1.21
VPS4B-202ENST00000588059 TRAV12-3A0A0B4J271 114 aa7.49□□□□□ -1.21
VPS4B-202ENST00000588059 KRTAP29-1A8MX34 341 aaPredicted RBP7.49□□□□□ -1.21
VPS4B-202ENST00000588059 IGKV2D-40P01614 121 aaPredicted RBP7.49□□□□□ -1.21
VPS4B-202ENST00000588059 RANP62826 216 aaKnown RBP7.49□□□□□ -1.21
VPS4B-202ENST00000588059 KHDC3LQ587J8 217 aa7.49□□□□□ -1.21
VPS4B-202ENST00000588059 Q5BKY6 102 aa7.49□□□□□ -1.21
VPS4B-202ENST00000588059 HSD17B11Q8NBQ5 300 aa7.49□□□□□ -1.21
VPS4B-202ENST00000588059 ASB13Q8WXK3 278 aa7.49□□□□□ -1.21
VPS4B-202ENST00000588059 PHYHIPLQ96FC7 376 aa7.49□□□□□ -1.21
VPS4B-202ENST00000588059 LINC00477Q96M19 166 aa7.49□□□□□ -1.21
VPS4B-202ENST00000588059 TMEM70Q9BUB7 260 aa7.49□□□□□ -1.21
VPS4B-202ENST00000588059 DNAH8Q96JB1 4490 aa7.48□□□□□ -1.21
VPS4B-202ENST00000588059 FXYD6-FXYD2A0A087WZ82 144 aa7.48□□□□□ -1.21
VPS4B-202ENST00000588059 A0A1W2PPV4 95 aa7.48□□□□□ -1.21
VPS4B-202ENST00000588059 RAB2AP61019 212 aa7.48□□□□□ -1.21
VPS4B-202ENST00000588059 DAZ2Q13117 558 aaKnown RBP7.48□□□□□ -1.21
VPS4B-202ENST00000588059 ZNF266Q14584 549 aa7.48□□□□□ -1.21
VPS4B-202ENST00000588059 TMEM78Q5T7P6 136 aa7.48□□□□□ -1.21
VPS4B-202ENST00000588059 INO80EQ8NBZ0 244 aaPredicted RBP7.48□□□□□ -1.21
VPS4B-202ENST00000588059 AQP10Q96PS8 301 aa7.48□□□□□ -1.21
VPS4B-202ENST00000588059 ODF3Q96PU9 254 aa7.48□□□□□ -1.21
VPS4B-202ENST00000588059 AGPAT4-IT1Q9H0P7 198 aa7.48□□□□□ -1.21
VPS4B-202ENST00000588059 TRGV2A0A075B6R0 118 aa7.47□□□□□ -1.21
VPS4B-202ENST00000588059 HMGB3O15347 200 aaKnown RBP7.47□□□□□ -1.21
VPS4B-202ENST00000588059 RNASE4P34096 147 aaKnown RBP7.47□□□□□ -1.21
VPS4B-202ENST00000588059 CSN1S1P47710 185 aa7.47□□□□□ -1.21
VPS4B-202ENST00000588059 OR10G4Q8NGN3 311 aa7.47□□□□□ -1.21
VPS4B-202ENST00000588059 OR10G9Q8NGN4 311 aa7.47□□□□□ -1.21
VPS4B-202ENST00000588059 OR10G7Q8NGN6 311 aa7.47□□□□□ -1.21
VPS4B-202ENST00000588059 OR2T35Q8NGX2 323 aa7.47□□□□□ -1.21
VPS4B-202ENST00000588059 LINC00467Q9BRT7 94 aa7.47□□□□□ -1.21
VPS4B-202ENST00000588059 ICOSQ9Y6W8 199 aa7.47□□□□□ -1.21
VPS4B-202ENST00000588059 C7orf71A4D174 169 aa7.46□□□□□ -1.22
VPS4B-202ENST00000588059 SLC25A5P05141 298 aaKnown RBP7.46□□□□□ -1.22
VPS4B-202ENST00000588059 GPX1P07203 203 aa7.46□□□□□ -1.22
VPS4B-202ENST00000588059 BTN1A1Q13410 526 aa7.46□□□□□ -1.22
VPS4B-202ENST00000588059 C9orf47Q6ZRZ4 202 aa7.46□□□□□ -1.22
VPS4B-202ENST00000588059 HYLS1Q96M11 299 aa7.46□□□□□ -1.22
VPS4B-202ENST00000588059 VGLL1Q99990 258 aa7.46□□□□□ -1.22
VPS4B-202ENST00000588059 MSRB1Q9NZV6 116 aa7.46□□□□□ -1.22
VPS4B-202ENST00000588059 RPH3ALQ9UNE2 315 aa7.46□□□□□ -1.22
VPS4B-202ENST00000588059 IGLV5-52A0A0A0MRZ9 124 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 BORCS7-ASMTA0A0B4J1R7 106 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 PAX4O43316 350 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 ATP6V0CP27449 155 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 CDC34P49427 236 aaPredicted RBP7.45□□□□□ -1.22
VPS4B-202ENST00000588059 ZNF138P52744 262 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 CD300CQ08708 224 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 SERTAD4-AS1Q5TG53 156 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 LYPD5Q6UWN5 251 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 PQLC2Q6ZP29 291 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 C11orf72Q8NBR9 251 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 Q8TAT8 98 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 CMTM2Q8TAZ6 248 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 PYGO2Q9BRQ0 406 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 SH3BGRL3Q9H299 93 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 GSN-AS1Q9NRJ2 163 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 TNFSF18Q9UNG2 199 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 LY96Q9Y6Y9 160 aa7.45□□□□□ -1.22
VPS4B-202ENST00000588059 LRP1Q07954 4544 aaKnown RBP7.44□□□□□ -1.22
VPS4B-202ENST00000588059 TRAV9-2A0A087WT02 112 aa7.44□□□□□ -1.22
VPS4B-202ENST00000588059 TRGV1A0A0A0MS02 117 aa7.44□□□□□ -1.22
VPS4B-202ENST00000588059 PGPA6NDG6 321 aa7.44□□□□□ -1.22
VPS4B-202ENST00000588059 KLLNB2CW77 178 aa7.44□□□□□ -1.22
VPS4B-202ENST00000588059 ZNF324O75467 553 aaPredicted RBP7.44□□□□□ -1.22
VPS4B-202ENST00000588059 MBP02144 154 aa7.44□□□□□ -1.22
VPS4B-202ENST00000588059 FAM74A1Q5RGS3 127 aa7.44□□□□□ -1.22
VPS4B-202ENST00000588059 RPL7L1Q6DKI1 246 aaKnown RBP7.44□□□□□ -1.22
VPS4B-202ENST00000588059 SYT8Q8NBV8 401 aa7.44□□□□□ -1.22
VPS4B-202ENST00000588059 OR2G3Q8NGZ4 309 aa7.44□□□□□ -1.22
VPS4B-202ENST00000588059 FAM19A4Q96LR4 140 aa7.44□□□□□ -1.22
VPS4B-202ENST00000588059 PSMG3Q9BT73 122 aaPredicted RBP7.44□□□□□ -1.22
VPS4B-202ENST00000588059 OTORQ9NRC9 128 aa7.44□□□□□ -1.22
VPS4B-202ENST00000588059 FAM30AQ9NZY2 134 aa7.44□□□□□ -1.22
VPS4B-202ENST00000588059 ZNF492Q9P255 531 aa7.44□□□□□ -1.22
VPS4B-202ENST00000588059 RBAKDNA6NC62 111 aa7.43□□□□□ -1.22
VPS4B-202ENST00000588059 LRCOL1A6NCL2 159 aa7.43□□□□□ -1.22
VPS4B-202ENST00000588059 RNF222A6NCQ9 220 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms