RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 IGKV1-8A0A0C4DH67 115 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 MUC21A0A0G2JKD1 596 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 A0A0J9YW62 118 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 DPRXA6NFQ7 191 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 OOSP1A8MZH6 123 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 C9JQL5 133 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 H3BMG7 143 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 H3BRM9 83 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 ZNF73O43830 326 aaPredicted RBP2.52□□□□□ -2.01
NUP88-208ENST00000574087 HYPMO75409 117 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 LINC00869P0C866 280 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 HLA-DMBP28068 263 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 ASIPP42127 132 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 SEC11AP67812 179 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 LGALS9BQ3B8N2 356 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 KRTAP13-2Q52LG2 175 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 LCA10Q71F78 164 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 PHF5AQ7RTV0 110 aaKnown RBP2.52□□□□□ -2.01
NUP88-208ENST00000574087 PRNTQ86SH4 94 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 APCDD1LQ8NCL9 501 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 RAB37Q96AX2 223 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 TOMM6Q96B49 74 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 C18orf15Q96N68 181 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 SHANK2-AS3Q9BTD1 123 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 NMES1Q9C002 83 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 ST20Q9HBF5 79 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 AK3Q9UIJ7 227 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 DYSFO75923 2080 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 GBF1Q92538 1859 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 TRBV20-1A0A075B6N2 111 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 IGKV1-27A0A075B6S5 117 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 TRAV9-1A0A075B6T8 112 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 TRBV6-7A0A0A0MS04 114 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 TRGV5A0A0B4J1U4 118 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 TRAV40A0A0B4J280 105 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 CCL15-CCL14A0A0B4J2E2 113 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 IGHV1-69DA0A0B4J2H0 117 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 TRBV27A0A0K0K1C4 114 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 TMEM223A0PJW6 202 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 IGLL5B9A064 214 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 M0R1X1 148 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 UBE2L6O14933 153 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 OR1I1O60431 355 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 IGLV3-27P01718 113 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 GYPAP02724 150 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 TCRAP04437 139 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 SLC25A5P05141 298 aaKnown RBP2.51□□□□□ -2.01
NUP88-208ENST00000574087 CXCL1P09341 107 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 HLA-DRB4P13762 266 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 HINT1P49773 126 aaPredicted RBP2.51□□□□□ -2.01
NUP88-208ENST00000574087 ZNF80P51504 273 aaPredicted RBP2.51□□□□□ -2.01
NUP88-208ENST00000574087 HES3Q5TGS1 186 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 LINC01545Q5VT33 79 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 VSTM2AQ8TAG5 236 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 PPP1R1CQ8WVI7 109 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 RABAC1Q9UI14 185 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 SERP1Q9Y6X1 66 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 HLA-DRB4X5D2U9 266 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 NRAPQ86VF7 1730 aa2.51□□□□□ -2.01
NUP88-208ENST00000574087 TNRC6AQ8NDV7 1962 aaKnown RBP2.5□□□□□ -2.01
NUP88-208ENST00000574087 ALS2Q96Q42 1657 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 PATJQ8NI35 1801 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 TRBV20OR9-2A0A075B6H5 130 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 IGKV1D-43A0A0B4J1Z2 117 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 A0A0D9SEW6 157 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 H3BT86 120 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 COX7A2LO14548 114 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 CST7O76096 145 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 TRACP01848 142 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 RBP4P02753 201 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 FABP2P12104 132 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 PTHLHP12272 177 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 ADIRFQ15847 76 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 BVES-AS1Q5T3Y7 98 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 NCBP2-AS2Q69YL0 99 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 ZNF322Q6U7Q0 402 aaPredicted RBP2.5□□□□□ -2.01
NUP88-208ENST00000574087 ZNF101Q8IZC7 436 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 WFDC11Q8NEX6 87 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 OR10P1Q8NGE3 313 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 SCGB1C1Q8TD33 95 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 COPS9Q8WXC6 57 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 LSM10Q969L4 123 aaKnown RBP2.5□□□□□ -2.01
NUP88-208ENST00000574087 RBMXL1Q96E39 390 aaKnown RBP2.5□□□□□ -2.01
NUP88-208ENST00000574087 CKLFQ9UBR5 152 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 TP73-AS1Q9UF72 201 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 RICTORQ6R327 1708 aa2.5□□□□□ -2.01
NUP88-208ENST00000574087 TNRC6CQ9HCJ0 1690 aaKnown RBP2.5□□□□□ -2.01
NUP88-208ENST00000574087 MYO18AQ92614 2054 aaKnown RBP2.49□□□□□ -2.01
NUP88-208ENST00000574087 DOCK4Q8N1I0 1966 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 ZNF860A6NHJ4 632 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 A6NIN4 97 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 M0R129 80 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 NDUFB3O43676 98 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 SYNGR2O43760 224 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 IGLV3-19P01714 112 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 PRH1P02810 166 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 GYPBP06028 91 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 COX7CP15954 63 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 LGALS3P17931 250 aaKnown RBP2.49□□□□□ -2.01
NUP88-208ENST00000574087 IL3RAP26951 378 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 184.8 ms