RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 PRSS33Q8NF86 280 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 SPTSSAQ969W0 71 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 CXCL16Q9H2A7 254 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 SPRR3Q9UBC9 169 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 XCL2Q9UBD3 114 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 LOC285556D6RIA3 1793 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 MIA3Q5JRA6 1907 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 NRAPQ86VF7 1730 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 RALGAPA2Q2PPJ7 1873 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 IGHV1-69DA0A0B4J2H0 117 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 NDUFC1O43677 76 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 COX7A2P2O60397 106 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 IGLV3-27P01718 113 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 IL4P05112 153 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 PATE4P0C8F1 98 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 INAFM2P0DMQ5 153 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 CKS2P33552 79 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 ZNF136P52737 540 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 INSL4Q14641 139 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 ZNF56Q15929 161 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 C11orf71Q6IPW1 123 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 GUSBP11Q6P575 273 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 ZNF584Q8IVC4 421 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 Q8N2B8 174 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 Q8N8P6 123 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 ZNF714Q96N38 554 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 HIST1H4GQ99525 98 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 OPRPNQ99935 248 aaPredicted RBP3.74□□□□□ -1.81
VPS35-205ENST00000563984 Q9H3A6 140 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 GNG13Q9P2W3 67 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 LY96Q9Y6Y9 160 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 LAMA4Q16363 1823 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 ANAPC1Q9H1A4 1944 aa3.74□□□□□ -1.81
VPS35-205ENST00000563984 NRXN3Q9Y4C0 1643 aa3.73□□□□□ -1.81
VPS35-205ENST00000563984 C4AP0C0L4 1744 aa3.73□□□□□ -1.81
VPS35-205ENST00000563984 C4BP0C0L5 1744 aa3.73□□□□□ -1.81
VPS35-205ENST00000563984 DDX60LQ5H9U9 1706 aaKnown RBP3.73□□□□□ -1.81
VPS35-205ENST00000563984 IGKV1-5P01602 117 aa3.73□□□□□ -1.81
VPS35-205ENST00000563984 GCHFRP30047 84 aa3.73□□□□□ -1.81
VPS35-205ENST00000563984 UBE2AP49459 152 aa3.73□□□□□ -1.81
VPS35-205ENST00000563984 RPL30P62888 115 aaKnown RBP3.73□□□□□ -1.81
VPS35-205ENST00000563984 CCL20P78556 96 aa3.73□□□□□ -1.81
VPS35-205ENST00000563984 SS18Q15532 418 aa3.73□□□□□ -1.81
VPS35-205ENST00000563984 FAM104BQ5XKR9 115 aa3.73□□□□□ -1.81
VPS35-205ENST00000563984 ZFP2Q6ZN57 461 aa3.73□□□□□ -1.81
VPS35-205ENST00000563984 MDP1Q86V88 176 aa3.73□□□□□ -1.81
VPS35-205ENST00000563984 SLC25A29Q8N8R3 303 aa3.73□□□□□ -1.81
VPS35-205ENST00000563984 CHCHD10Q8WYQ3 142 aaPredicted RBP3.73□□□□□ -1.81
VPS35-205ENST00000563984 CHCHD1Q96BP2 118 aaKnown RBP3.73□□□□□ -1.81
VPS35-205ENST00000563984 NPCDR1Q9BY65 106 aa3.73□□□□□ -1.81
VPS35-205ENST00000563984 PARP12Q9H0J9 701 aaKnown RBP3.73□□□□□ -1.81
VPS35-205ENST00000563984 ZNF492Q9P255 531 aa3.73□□□□□ -1.81
VPS35-205ENST00000563984 PTPRDP23468 1912 aa3.73□□□□□ -1.81
VPS35-205ENST00000563984 ADAMTS7Q9UKP4 1686 aa3.72□□□□□ -1.81
VPS35-205ENST00000563984 PHF3Q92576 2039 aaKnown RBP3.72□□□□□ -1.81
VPS35-205ENST00000563984 PIGBOS1A0A0B4J2F0 54 aa3.72□□□□□ -1.81
VPS35-205ENST00000563984 BUB1B-PAK6H3BSN5 160 aa3.72□□□□□ -1.81
VPS35-205ENST00000563984 BCE1O60756 84 aa3.72□□□□□ -1.81
VPS35-205ENST00000563984 NPYP01303 97 aa3.72□□□□□ -1.81
VPS35-205ENST00000563984 CCKP06307 115 aa3.72□□□□□ -1.81
VPS35-205ENST00000563984 RNASE2P10153 161 aaKnown RBP3.72□□□□□ -1.81
VPS35-205ENST00000563984 EFNA4P52798 201 aa3.72□□□□□ -1.81
VPS35-205ENST00000563984 RPS21P63220 83 aaKnown RBP3.72□□□□□ -1.81
VPS35-205ENST00000563984 CIRBPQ14011 172 aaKnown RBP3.72□□□□□ -1.81
VPS35-205ENST00000563984 C14orf177Q52M58 125 aa3.72□□□□□ -1.81
VPS35-205ENST00000563984 DEFB121Q5J5C9 76 aa3.72□□□□□ -1.81
VPS35-205ENST00000563984 LINC00242Q5T6M2 205 aa3.72□□□□□ -1.81
VPS35-205ENST00000563984 TMEM190Q8WZ59 177 aa3.72□□□□□ -1.81
VPS35-205ENST00000563984 GFRA4Q9GZZ7 299 aa3.72□□□□□ -1.81
VPS35-205ENST00000563984 DYNLRB1Q9NP97 96 aa3.72□□□□□ -1.81
VPS35-205ENST00000563984 NHP2Q9NX24 153 aaKnown RBP3.72□□□□□ -1.81
VPS35-205ENST00000563984 TAS2R4Q9NYW5 299 aa3.72□□□□□ -1.81
VPS35-205ENST00000563984 LY75O60449 1722 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 IGHV3OR15-7A0A075B7D8 119 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 A0A0G2JRQ6 117 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 CRYM-AS1A6NIL9 109 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 IBA57-AS1B1ANH7 110 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 PRM2P04554 102 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 FUSP35637 526 aaKnown RBP eCLIP3.71□□□□□ -1.82
VPS35-205ENST00000563984 CRYBA2P53672 197 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 GNB1P62873 340 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 BLCAPP62952 87 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 RBMY1FQ15415 496 aaKnown RBP3.71□□□□□ -1.82
VPS35-205ENST00000563984 LINC01554Q52M75 96 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 GPHB5Q86YW7 130 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.71□□□□□ -1.82
VPS35-205ENST00000563984 NUP37Q8NFH4 326 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 WFDC5Q8TCV5 224 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 DIRC1Q969H9 104 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 SLC25A2Q9BXI2 301 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 IL36BQ9NZH7 164 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 CPAMD8Q8IZJ3 1885 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 DOCK8Q8NF50 2099 aa3.71□□□□□ -1.82
VPS35-205ENST00000563984 MED12LQ86YW9 2145 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 PDE4DIPQ5VU43 2346 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 IGHV3OR16-13A0A075B7E8 117 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 IGKV3D-15A0A087WSY6 115 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 IGKV1-9A0A0C4DH69 117 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 MYMXA0A1B0GTQ4 84 aa3.7□□□□□ -1.82
VPS35-205ENST00000563984 A0A1W2PQD3 144 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms