RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 OR4B1Q8NGF8 309 aa-0.84□□□□□ -2.54
VPS13C-205ENST00000558088 PPP1R1CQ8WVI7 109 aa-0.84□□□□□ -2.54
VPS13C-205ENST00000558088 CLEC2BQ92478 149 aa-0.84□□□□□ -2.54
VPS13C-205ENST00000558088 DMAC1Q96GE9 116 aa-0.84□□□□□ -2.54
VPS13C-205ENST00000558088 FKBP11Q9NYL4 201 aa-0.84□□□□□ -2.54
VPS13C-205ENST00000558088 UNC13BO14795 1591 aa-0.84□□□□□ -2.54
VPS13C-205ENST00000558088 ATG2AQ2TAZ0 1938 aa-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 MYCBP2O75592 4640 aa-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 TMEM114B3SHH9 223 aa-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 EDF1O60869 148 aaKnown RBP-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 PRM1P04553 51 aa-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 APODP05090 189 aa-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 FABP2P12104 132 aa-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 TPT1P13693 172 aaKnown RBP-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 SDC4P31431 198 aa-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 GTF2A1P52655 376 aaPredicted RBP-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 LSM6P62312 80 aaKnown RBP-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 RHOHQ15669 191 aa-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 KRTAP20-2Q3LI61 65 aa-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 C1orf140Q5VVS0 124 aa-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 PBDC1Q9BVG4 233 aa-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 SSR3Q9UNL2 185 aa-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 HERC2O95714 4834 aa-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 MED13LQ71F56 2210 aa-0.85□□□□□ -2.55
VPS13C-205ENST00000558088 KMT2AQ03164 3969 aa-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 PKDREJQ9NTG1 2253 aa-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 ZFYVE9O95405 1425 aa-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 FGD6Q6ZV73 1430 aa-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 AFDNP55196 1824 aaKnown RBP-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 ZNF670-ZNF695F2Z2N8 137 aa-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 H7C1C5 153 aa-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 KPNA4O00629 521 aaPredicted RBP-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 APOC1P02654 83 aa-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 HSPE1P61604 102 aaKnown RBP-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 LCN6P62502 163 aa-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 OR5H6Q8NGV6 325 aa-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 CFAP53Q96M91 514 aa-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 SMIM7Q9BQ49 75 aa-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 OR2H1Q9GZK4 316 aa-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 BET1LQ9NYM9 111 aa-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 PRO0255Q9UI72 69 aa-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 MAP3K5Q99683 1374 aa-0.86□□□□□ -2.55
VPS13C-205ENST00000558088 HECTD4Q9Y4D8 3996 aa-0.87□□□□□ -2.55
VPS13C-205ENST00000558088 NEBP20929 6669 aa-0.87□□□□□ -2.55
VPS13C-205ENST00000558088 TFF1P04155 84 aa-0.87□□□□□ -2.55
VPS13C-205ENST00000558088 GLRXP35754 106 aa-0.87□□□□□ -2.55
VPS13C-205ENST00000558088 WFDC2Q14508 124 aa-0.87□□□□□ -2.55
VPS13C-205ENST00000558088 RTL8BQ17RB0 113 aa-0.87□□□□□ -2.55
VPS13C-205ENST00000558088 AKR1C8PQ5T2L2 129 aa-0.87□□□□□ -2.55
VPS13C-205ENST00000558088 FKBP1CQ5VVH2 108 aa-0.87□□□□□ -2.55
VPS13C-205ENST00000558088 DGCR14Q96DF8 476 aaKnown RBP-0.87□□□□□ -2.55
VPS13C-205ENST00000558088 MCEEQ96PE7 176 aa-0.87□□□□□ -2.55
VPS13C-205ENST00000558088 RTL8AQ9BWD3 113 aa-0.87□□□□□ -2.55
VPS13C-205ENST00000558088 CPDO75976 1380 aa-0.87□□□□□ -2.55
VPS13C-205ENST00000558088 LAMC3Q9Y6N6 1575 aa-0.87□□□□□ -2.55
VPS13C-205ENST00000558088 N4BP2Q86UW6 1770 aaPredicted RBP-0.88□□□□□ -2.55
VPS13C-205ENST00000558088 SETD2Q9BYW2 2564 aaPredicted RBP-0.88□□□□□ -2.55
VPS13C-205ENST00000558088 PIEZO2Q9H5I5 2752 aa-0.88□□□□□ -2.55
VPS13C-205ENST00000558088 FLNBO75369 2602 aaKnown RBP-0.88□□□□□ -2.55
VPS13C-205ENST00000558088 GVQW2A0A096LPI5 108 aaPredicted RBP-0.88□□□□□ -2.55
VPS13C-205ENST00000558088 H3BQV1 296 aa-0.88□□□□□ -2.55
VPS13C-205ENST00000558088 ARF6P62330 175 aa-0.88□□□□□ -2.55
VPS13C-205ENST00000558088 FADDQ13158 208 aa-0.88□□□□□ -2.55
VPS13C-205ENST00000558088 SSBP3-AS1Q7Z2R9 100 aa-0.88□□□□□ -2.55
VPS13C-205ENST00000558088 OR5A2Q8NGI9 324 aa-0.88□□□□□ -2.55
VPS13C-205ENST00000558088 SMIM11BQ8TCY0 68 aa-0.88□□□□□ -2.55
VPS13C-205ENST00000558088 CYP4F30PQ9H0H9 118 aa-0.88□□□□□ -2.55
VPS13C-205ENST00000558088 ARL2BPQ9Y2Y0 163 aa-0.88□□□□□ -2.55
VPS13C-205ENST00000558088 SPTBN2O15020 2390 aa-0.89□□□□□ -2.55
VPS13C-205ENST00000558088 TRAV17A0A0B4J275 112 aa-0.89□□□□□ -2.55
VPS13C-205ENST00000558088 ZNF815PA8K554 130 aa-0.89□□□□□ -2.55
VPS13C-205ENST00000558088 PYYP10082 97 aa-0.89□□□□□ -2.55
VPS13C-205ENST00000558088 GCHFRP30047 84 aa-0.89□□□□□ -2.55
VPS13C-205ENST00000558088 ELOF1P60002 83 aaKnown RBP-0.89□□□□□ -2.55
VPS13C-205ENST00000558088 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa-0.89□□□□□ -2.55
VPS13C-205ENST00000558088 PHF5AQ7RTV0 110 aaKnown RBP-0.89□□□□□ -2.55
VPS13C-205ENST00000558088 UBE2DNLQ8IWF7 75 aa-0.89□□□□□ -2.55
VPS13C-205ENST00000558088 Q8IZM0 81 aa-0.89□□□□□ -2.55
VPS13C-205ENST00000558088 BORCS8Q96FH0 119 aa-0.89□□□□□ -2.55
VPS13C-205ENST00000558088 PRNDQ9UKY0 176 aa-0.89□□□□□ -2.55
VPS13C-205ENST00000558088 MPC1Q9Y5U8 109 aa-0.89□□□□□ -2.55
VPS13C-205ENST00000558088 F5P12259 2224 aa-0.89□□□□□ -2.55
VPS13C-205ENST00000558088 NINQ8N4C6 2090 aa-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 ZCCHC6Q5VYS8 1495 aaKnown RBP-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 EP300Q09472 2414 aaPredicted RBP-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 ADCY9O60503 1353 aa-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 RTL9Q8NET4 1388 aa-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 LOC107986453A0A1B0GWG9 222 aa-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 IFNA6P05013 189 aa-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 COX4I1P13073 169 aa-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 POLR2JP52435 117 aaKnown RBP-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 TAS2R41P59536 307 aa-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 MAXP61244 160 aa-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 EMX2Q04743 252 aa-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 AKIRIN2Q53H80 203 aa-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 PTRHD1Q6GMV3 140 aaKnown RBP-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 CCL4L1Q8NHW4 92 aa-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 PRELID3AQ96N28 172 aa-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 TAF9BQ9HBM6 251 aa-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 C19orf12Q9NSK7 152 aa-0.9□□□□□ -2.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms