RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 POLR2JP52435 117 aaKnown RBP1.28□□□□□ -2.2
VRK1-202ENST00000553683 MTPNP58546 118 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 LINC00313P59037 77 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 GABARAPL2P60520 117 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 SEC11AP67812 179 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 WFDC2Q14508 124 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 ELOBQ15370 118 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 MSMO1Q15800 293 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 Q56UQ5 140 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 HES3Q5TGS1 186 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 LYRM7Q5U5X0 104 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 C1orf140Q5VVS0 124 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 MORN3Q6PF18 240 aaPredicted RBP1.28□□□□□ -2.2
VRK1-202ENST00000553683 SSX8Q7RTT4 187 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 PHF5AQ7RTV0 110 aaKnown RBP1.28□□□□□ -2.2
VRK1-202ENST00000553683 KTN1-AS1Q86SY8 53 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 MDP1Q86V88 176 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 TEN1Q86WV5 123 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 VSTM2AQ8TAG5 236 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 LSM10Q969L4 123 aaKnown RBP1.28□□□□□ -2.2
VRK1-202ENST00000553683 GNPNAT1Q96EK6 184 aaPredicted RBP1.28□□□□□ -2.2
VRK1-202ENST00000553683 C18orf15Q96N68 181 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 THTPAQ9BU02 230 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 TMEM243Q9BU79 118 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 IMUPQ9GZP8 106 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 ST20Q9HBF5 79 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 FAM60AQ9NP50 221 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 TAAR3PQ9P1P4 343 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 KLK5Q9Y337 293 aaPredicted RBP1.28□□□□□ -2.2
VRK1-202ENST00000553683 NOP16Q9Y3C1 178 aaKnown RBP1.28□□□□□ -2.2
VRK1-202ENST00000553683 DNAJC15Q9Y5T4 150 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 V9GYH0 126 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 CRB1P82279 1406 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 NKTRP30414 1462 aaKnown RBP1.28□□□□□ -2.2
VRK1-202ENST00000553683 NRXN3Q9Y4C0 1643 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 KIF1AQ12756 1690 aa1.28□□□□□ -2.2
VRK1-202ENST00000553683 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.28□□□□□ -2.2
VRK1-202ENST00000553683 RIF1Q5UIP0 2472 aaKnown RBP1.28□□□□□ -2.2
VRK1-202ENST00000553683 SPTA1P02549 2419 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 FAM186AA6NE01 2351 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 PCNX1Q96RV3 2341 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 CACNA1DQ01668 2161 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 AKAP11Q9UKA4 1901 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 DSPPQ9NZW4 1301 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 TRBV24-1A0A075B6N3 115 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 TRAV8-3A0A0A6YYJ7 113 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 TRGV5A0A0B4J1U4 118 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 IGHV6-1A0A0B4J1U7 121 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 IGKV1D-43A0A0B4J1Z2 117 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 TRAV13-1A0A0B4J241 112 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 TRAV41A0A0B4J266 112 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 CCL15-CCL14A0A0B4J2E2 113 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 TRBV27A0A0K0K1C4 114 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 A0A1W2PPM0 123 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 RBAKDNA6NC62 111 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 ZNF705FA8MVS1 300 aaPredicted RBP1.27□□□□□ -2.21
VRK1-202ENST00000553683 A8MWV9 139 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 C9JQL5 133 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 H3BMG7 143 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 H3BT86 120 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 M0R129 80 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 M0R1X1 148 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 M0R381 172 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 LST1O00453 97 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 NDUFB2O95178 105 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 TRBV12-3P01733 135 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 MT-ND6P03923 174 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 TCRAP04437 139 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 CXCL1P09341 107 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 ZNF705DP0CH99 300 aaPredicted RBP1.27□□□□□ -2.21
VRK1-202ENST00000553683 ZNF705BP0CI00 300 aaPredicted RBP1.27□□□□□ -2.21
VRK1-202ENST00000553683 GADD45AP24522 165 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 SDC2P34741 201 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 ASIPP42127 132 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 PSMB3P49720 205 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 ZNF80P51504 273 aaPredicted RBP1.27□□□□□ -2.21
VRK1-202ENST00000553683 CCL23P55773 120 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 MP68P56378 58 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 HES1Q14469 280 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 RBMY1FQ15415 496 aaKnown RBP1.27□□□□□ -2.21
VRK1-202ENST00000553683 LGALS9BQ3B8N2 356 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 CLLU1OSQ5K130 101 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 C9orf153Q5TBE3 101 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 LGALS9CQ6DKI2 356 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 TMEM91Q6ZNR0 172 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 FP248Q71RG6 208 aaPredicted RBP1.27□□□□□ -2.21
VRK1-202ENST00000553683 LINC00305Q7Z4B0 112 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 PRNTQ86SH4 94 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 C10orf126Q8N4M7 172 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 DRAM1Q8N682 238 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 C3orf56Q8N813 242 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 WFDC11Q8NEX6 87 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 OR5C1Q8NGR4 320 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 OR2T35Q8NGX2 323 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 OR2T10Q8NGZ9 312 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 OR51H1Q8NH63 302 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 CMTM2Q8TAZ6 248 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 STAG3L4Q8TBR4 150 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 C18orf32Q8TCD1 76 aa1.27□□□□□ -2.21
VRK1-202ENST00000553683 SCGB1C1Q8TD33 95 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms