RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 FMC1Q96HJ9 113 aa7.49□□□□□ -1.21
CLIP1-212ENST00000540304 CCDC140Q96MF4 163 aa7.49□□□□□ -1.21
CLIP1-212ENST00000540304 RABAC1Q9UI14 185 aa7.49□□□□□ -1.21
CLIP1-212ENST00000540304 RNF223E7ERA6 249 aa7.48□□□□□ -1.21
CLIP1-212ENST00000540304 BMPR1BO00238 502 aa7.48□□□□□ -1.21
CLIP1-212ENST00000540304 FOXI2Q6ZQN5 318 aa7.48□□□□□ -1.21
CLIP1-212ENST00000540304 SIGLECL1Q8N7X8 197 aa7.48□□□□□ -1.21
CLIP1-212ENST00000540304 MAPK1IP1LQ8NDC0 245 aa7.48□□□□□ -1.21
CLIP1-212ENST00000540304 FAM223BA6NKX1 122 aa7.48□□□□□ -1.21
CLIP1-212ENST00000540304 ZNF253O75346 499 aa7.48□□□□□ -1.21
CLIP1-212ENST00000540304 SIGLEC15Q6ZMC9 328 aa7.48□□□□□ -1.21
CLIP1-212ENST00000540304 FAM231DQ6ZW35 169 aa7.48□□□□□ -1.21
CLIP1-212ENST00000540304 Q71RC1 249 aaPredicted RBP7.48□□□□□ -1.21
CLIP1-212ENST00000540304 FAM223AQ8IWN6 122 aa7.48□□□□□ -1.21
CLIP1-212ENST00000540304 EXOC3-AS1Q8N2X6 119 aa7.48□□□□□ -1.21
CLIP1-212ENST00000540304 OR2K2Q8NGT1 345 aa7.48□□□□□ -1.21
CLIP1-212ENST00000540304 ZNF414Q96IQ9 312 aa7.48□□□□□ -1.21
CLIP1-212ENST00000540304 C17orf77Q96MU5 243 aa7.48□□□□□ -1.21
CLIP1-212ENST00000540304 LINC00527Q9UJ94 153 aa7.48□□□□□ -1.21
CLIP1-212ENST00000540304 CCDC179H3BU77 68 aa7.47□□□□□ -1.21
CLIP1-212ENST00000540304 IGHG2P01859 326 aa7.47□□□□□ -1.21
CLIP1-212ENST00000540304 RPL7P18124 248 aaKnown RBP7.47□□□□□ -1.21
CLIP1-212ENST00000540304 PDE6HQ13956 83 aa7.47□□□□□ -1.21
CLIP1-212ENST00000540304 LCN12Q6JVE5 192 aa7.47□□□□□ -1.21
CLIP1-212ENST00000540304 CLEC19AQ6UXS0 136 aa7.47□□□□□ -1.21
CLIP1-212ENST00000540304 MXRA5Q9NR99 2828 aa7.47□□□□□ -1.21
CLIP1-212ENST00000540304 H3BUT2 72 aa7.47□□□□□ -1.21
CLIP1-212ENST00000540304 LTAP01374 205 aa7.47□□□□□ -1.21
CLIP1-212ENST00000540304 MT-ATP8P03928 68 aa7.47□□□□□ -1.21
CLIP1-212ENST00000540304 FRMD6-AS1P0C7T7 363 aa7.47□□□□□ -1.21
CLIP1-212ENST00000540304 C3orf79P0CE67 100 aa7.47□□□□□ -1.21
CLIP1-212ENST00000540304 C4orf48Q5BLP8 95 aa7.47□□□□□ -1.21
CLIP1-212ENST00000540304 ZFAND3Q9H8U3 227 aa7.47□□□□□ -1.21
CLIP1-212ENST00000540304 GNB4Q9HAV0 340 aa7.47□□□□□ -1.21
CLIP1-212ENST00000540304 APCP25054 2843 aa7.47□□□□□ -1.21
CLIP1-212ENST00000540304 CR1P17927 2039 aa7.46□□□□□ -1.21
CLIP1-212ENST00000540304 SPINK4O60575 86 aa7.46□□□□□ -1.21
CLIP1-212ENST00000540304 TRGV3P03979 118 aa7.46□□□□□ -1.21
CLIP1-212ENST00000540304 GPX1P07203 203 aa7.46□□□□□ -1.21
CLIP1-212ENST00000540304 NHLRC4P0CG21 123 aaPredicted RBP7.46□□□□□ -1.21
CLIP1-212ENST00000540304 IGHV4-31P0DP07 118 aa7.46□□□□□ -1.21
CLIP1-212ENST00000540304 C12orf54Q6X4T0 127 aa7.46□□□□□ -1.21
CLIP1-212ENST00000540304 SPAG8Q99932 426 aaPredicted RBP7.46□□□□□ -1.21
CLIP1-212ENST00000540304 MCRIP2Q9BUT9 160 aaKnown RBP7.46□□□□□ -1.21
CLIP1-212ENST00000540304 CCDC168Q8NDH2 2452 aa7.46□□□□□ -1.22
CLIP1-212ENST00000540304 TEX15Q9BXT5 2789 aa7.46□□□□□ -1.22
CLIP1-212ENST00000540304 CREBBPQ92793 2442 aa7.46□□□□□ -1.22
CLIP1-212ENST00000540304 FABP5P3A8MUU1 101 aa7.46□□□□□ -1.22
CLIP1-212ENST00000540304 H3BUA1 57 aa7.46□□□□□ -1.22
CLIP1-212ENST00000540304 CA1P00915 261 aaPredicted RBP7.46□□□□□ -1.22
CLIP1-212ENST00000540304 EDN2P20800 178 aa7.46□□□□□ -1.22
CLIP1-212ENST00000540304 TCL1AP56279 114 aa7.46□□□□□ -1.22
CLIP1-212ENST00000540304 SLC35B1P78383 322 aa7.46□□□□□ -1.22
CLIP1-212ENST00000540304 DEFB112Q30KQ8 113 aa7.46□□□□□ -1.22
CLIP1-212ENST00000540304 GOLT1AQ6ZVE7 132 aa7.46□□□□□ -1.22
CLIP1-212ENST00000540304 Q86TA4 180 aa7.46□□□□□ -1.22
CLIP1-212ENST00000540304 MBD6Q96DN6 1003 aa7.46□□□□□ -1.22
CLIP1-212ENST00000540304 AP1S3Q96PC3 154 aa7.46□□□□□ -1.22
CLIP1-212ENST00000540304 MLST8Q9BVC4 326 aa7.46□□□□□ -1.22
CLIP1-212ENST00000540304 TMEM160Q9NX00 188 aa7.46□□□□□ -1.22
CLIP1-212ENST00000540304 TRBV6-1A0A0K0K1D8 114 aa7.45□□□□□ -1.22
CLIP1-212ENST00000540304 SMIM27A0A1W2PRY6 76 aa7.45□□□□□ -1.22
CLIP1-212ENST00000540304 BLCAPP62952 87 aa7.45□□□□□ -1.22
CLIP1-212ENST00000540304 ADAMTSL5Q6ZMM2 481 aa7.45□□□□□ -1.22
CLIP1-212ENST00000540304 BAGE3Q86Y29 109 aa7.45□□□□□ -1.22
CLIP1-212ENST00000540304 AAMDCQ9H7C9 122 aa7.45□□□□□ -1.22
CLIP1-212ENST00000540304 TRAV9-2A0A087WT02 112 aa7.45□□□□□ -1.22
CLIP1-212ENST00000540304 F5H768 121 aa7.45□□□□□ -1.22
CLIP1-212ENST00000540304 J3QR89 54 aa7.45□□□□□ -1.22
CLIP1-212ENST00000540304 IGLV2-11P01706 119 aa7.45□□□□□ -1.22
CLIP1-212ENST00000540304 PPIFP30405 207 aaKnown RBP7.45□□□□□ -1.22
CLIP1-212ENST00000540304 TMEM75Q8N9X5 138 aa7.45□□□□□ -1.22
CLIP1-212ENST00000540304 OR5A1Q8NGJ0 315 aa7.45□□□□□ -1.22
CLIP1-212ENST00000540304 ST20Q9HBF5 79 aa7.45□□□□□ -1.22
CLIP1-212ENST00000540304 C9orf118A6NHY6 69 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 FSHBP01225 129 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 IGHV4-59P01825 116 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 CRISP2P16562 243 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 PMCHP20382 165 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 GRAMD2BQ96HH9 432 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 Q96MF0 132 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 ZNF492Q9P255 531 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 SPCS1Q9Y6A9 102 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 TRAV8-1A0A0A6YYK1 113 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 PLA2G2AP14555 144 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 NTF3P20783 257 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 FA2HQ7L5A8 372 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 SPATA12Q7Z6I5 190 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 PRNTQ86SH4 94 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 OR10AG1Q8NH19 301 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 USMG5Q96IX5 58 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 TM2D2Q9BX73 214 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 ZNF580Q9UK33 172 aa7.44□□□□□ -1.22
CLIP1-212ENST00000540304 SONP18583 2426 aaKnown RBP7.44□□□□□ -1.22
CLIP1-212ENST00000540304 A0A087X0K7 114 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 A0A0G2JLM5 398 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 CLPSL1A2RUU4 121 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 BUB3O43684 328 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 CBLN1P23435 193 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 IER3P46695 156 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms