RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 FOXC2Q99958 501 aa11.05□□□□□ -0.64
USP48-213ENST00000529637 TM2D2Q9BX73 214 aa11.05□□□□□ -0.64
USP48-213ENST00000529637 HIGD1BQ9P298 99 aa11.05□□□□□ -0.64
USP48-213ENST00000529637 CDSNQ15517 529 aa11.05□□□□□ -0.64
USP48-213ENST00000529637 IGFL4Q6B9Z1 124 aa11.05□□□□□ -0.64
USP48-213ENST00000529637 C20orf78Q9BR46 151 aa11.05□□□□□ -0.64
USP48-213ENST00000529637 TMEM160Q9NX00 188 aa11.05□□□□□ -0.64
USP48-213ENST00000529637 TRAV40A0A0B4J280 105 aa11.05□□□□□ -0.64
USP48-213ENST00000529637 NPIPB5A8MRT5 1133 aa11.05□□□□□ -0.64
USP48-213ENST00000529637 SHANK2-AS3Q9BTD1 123 aa11.05□□□□□ -0.64
USP48-213ENST00000529637 HIVEP3Q5T1R4 2406 aa11.04□□□□□ -0.64
USP48-213ENST00000529637 TMEM8BA6NDV4 472 aa11.04□□□□□ -0.64
USP48-213ENST00000529637 IGKCP01834 107 aa11.04□□□□□ -0.64
USP48-213ENST00000529637 RNF185Q96GF1 192 aa11.04□□□□□ -0.64
USP48-213ENST00000529637 SPG11Q96JI7 2443 aa11.04□□□□□ -0.64
USP48-213ENST00000529637 MRPS12O15235 138 aaKnown RBP11.03□□□□□ -0.64
USP48-213ENST00000529637 C12orf74Q32Q52 190 aa11.03□□□□□ -0.64
USP48-213ENST00000529637 FCER1GP30273 86 aa11.03□□□□□ -0.64
USP48-213ENST00000529637 ZNF491Q8N8L2 437 aa11.03□□□□□ -0.64
USP48-213ENST00000529637 AAMDCQ9H7C9 122 aa11.03□□□□□ -0.64
USP48-213ENST00000529637 CRYBA4P53673 196 aa11.03□□□□□ -0.64
USP48-213ENST00000529637 PRO0461Q9UI25 63 aa11.03□□□□□ -0.64
USP48-213ENST00000529637 RAXQ9Y2V3 346 aa11.03□□□□□ -0.64
USP48-213ENST00000529637 H3BRN7 92 aa11.02□□□□□ -0.64
USP48-213ENST00000529637 C5orf64Q2M2E5 130 aa11.02□□□□□ -0.64
USP48-213ENST00000529637 PIFOQ8TCI5 191 aa11.02□□□□□ -0.64
USP48-213ENST00000529637 TMEM158Q8WZ71 300 aa11.02□□□□□ -0.64
USP48-213ENST00000529637 RNF5Q99942 180 aa11.02□□□□□ -0.64
USP48-213ENST00000529637 MAP1AP78559 2803 aaPredicted RBP11.02□□□□□ -0.65
USP48-213ENST00000529637 LY6LH3BQJ8 138 aa11.02□□□□□ -0.65
USP48-213ENST00000529637 MRPL35Q9NZE8 188 aaKnown RBP11.02□□□□□ -0.65
USP48-213ENST00000529637 MFAP4P55083 255 aa11.01□□□□□ -0.65
USP48-213ENST00000529637 GAGE13Q4V321 117 aa11.01□□□□□ -0.65
USP48-213ENST00000529637 J3QR89 54 aa11.01□□□□□ -0.65
USP48-213ENST00000529637 MAP1LC3AQ9H492 121 aa11.01□□□□□ -0.65
USP48-213ENST00000529637 TNFRSF6BO95407 300 aa11.01□□□□□ -0.65
USP48-213ENST00000529637 HLA-DMBP28068 263 aa11.01□□□□□ -0.65
USP48-213ENST00000529637 SCGB2A2Q13296 93 aa11□□□□□ -0.65
USP48-213ENST00000529637 SFTA2Q6UW10 78 aa11□□□□□ -0.65
USP48-213ENST00000529637 C21orf62Q9NYP8 219 aa11□□□□□ -0.65
USP48-213ENST00000529637 HRNRQ86YZ3 2850 aaPredicted RBP11□□□□□ -0.65
USP48-213ENST00000529637 A0A1B0GWB2 263 aa10.99□□□□□ -0.65
USP48-213ENST00000529637 DPM2O94777 84 aa10.99□□□□□ -0.65
USP48-213ENST00000529637 NDPQ00604 133 aa10.99□□□□□ -0.65
USP48-213ENST00000529637 VMO1Q7Z5L0 202 aa10.99□□□□□ -0.65
USP48-213ENST00000529637 CFHR4Q92496 578 aa10.99□□□□□ -0.65
USP48-213ENST00000529637 PRR25Q96S07 402 aa10.99□□□□□ -0.65
USP48-213ENST00000529637 HIST1H4GQ99525 98 aa10.99□□□□□ -0.65
USP48-213ENST00000529637 IGLC6P0CF74 106 aa10.99□□□□□ -0.65
USP48-213ENST00000529637 PRTN3P24158 256 aa10.99□□□□□ -0.65
USP48-213ENST00000529637 OR11H6Q8NGC7 330 aa10.99□□□□□ -0.65
USP48-213ENST00000529637 NDUFA3O95167 84 aa10.98□□□□□ -0.65
USP48-213ENST00000529637 ORM1P02763 201 aa10.98□□□□□ -0.65
USP48-213ENST00000529637 FHL3Q13643 280 aa10.98□□□□□ -0.65
USP48-213ENST00000529637 ECSCRQ19T08 205 aa10.98□□□□□ -0.65
USP48-213ENST00000529637 DYNAPQ8N1N2 210 aa10.98□□□□□ -0.65
USP48-213ENST00000529637 LY6G5BQ8NDX9 201 aa10.98□□□□□ -0.65
USP48-213ENST00000529637 GEMIN7Q9H840 131 aaKnown RBP10.98□□□□□ -0.65
USP48-213ENST00000529637 ADORA2A-AS1P86434 159 aa10.98□□□□□ -0.65
USP48-213ENST00000529637 LYPD1Q8N2G4 141 aa10.98□□□□□ -0.65
USP48-213ENST00000529637 FANCD2OSQ96PS1 177 aa10.98□□□□□ -0.65
USP48-213ENST00000529637 SRSF8Q9BRL6 282 aaKnown RBP10.98□□□□□ -0.65
USP48-213ENST00000529637 LINC01548A6NM66 108 aa10.97□□□□□ -0.65
USP48-213ENST00000529637 RRN3P1Q2M238 152 aa10.97□□□□□ -0.65
USP48-213ENST00000529637 SYT8Q8NBV8 401 aa10.97□□□□□ -0.65
USP48-213ENST00000529637 IGHV3OR16-13A0A075B7E8 117 aa10.97□□□□□ -0.65
USP48-213ENST00000529637 IGHV3-74A0A0B4J1X5 117 aa10.97□□□□□ -0.65
USP48-213ENST00000529637 TRAV26-2A0A0B4J265 109 aa10.97□□□□□ -0.65
USP48-213ENST00000529637 SMCPP49901 116 aaPredicted RBP10.97□□□□□ -0.65
USP48-213ENST00000529637 NFE4Q86UQ8 179 aa10.97□□□□□ -0.65
USP48-213ENST00000529637 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.97□□□□□ -0.658e-7■■■■□ 25
USP48-213ENST00000529637 APOMO95445 188 aa10.97□□□□□ -0.65
USP48-213ENST00000529637 EFNA4P52798 201 aa10.97□□□□□ -0.65
USP48-213ENST00000529637 GLMPQ8WWB7 406 aa10.97□□□□□ -0.65
USP48-213ENST00000529637 PSMG3-AS1Q96PY0 264 aa10.97□□□□□ -0.65
USP48-213ENST00000529637 CDIP1Q9H305 208 aa10.97□□□□□ -0.65
USP48-213ENST00000529637 TMEM238LA0A1B0GVL6 79 aa10.96□□□□□ -0.65
USP48-213ENST00000529637 GATA3P23771 443 aa10.96□□□□□ -0.65
USP48-213ENST00000529637 IGHV3-66A0A0C4DH42 116 aa10.96□□□□□ -0.66
USP48-213ENST00000529637 MT-ATP8P03928 68 aa10.96□□□□□ -0.66
USP48-213ENST00000529637 KLRB1Q12918 225 aa10.96□□□□□ -0.66
USP48-213ENST00000529637 TCTEX1D4Q5JR98 221 aa10.96□□□□□ -0.66
USP48-213ENST00000529637 TTC9CQ8N5M4 171 aa10.96□□□□□ -0.66
USP48-213ENST00000529637 PTH2Q96A98 100 aa10.96□□□□□ -0.66
USP48-213ENST00000529637 MRAP2Q96G30 205 aa10.96□□□□□ -0.66
USP48-213ENST00000529637 LINC01546A6NGU7 62 aa10.96□□□□□ -0.66
USP48-213ENST00000529637 M0R1W7 72 aa10.96□□□□□ -0.66
USP48-213ENST00000529637 TRGV3P03979 118 aa10.96□□□□□ -0.66
USP48-213ENST00000529637 MORN3Q6PF18 240 aaPredicted RBP10.96□□□□□ -0.66
USP48-213ENST00000529637 DTX2Q86UW9 622 aa10.96□□□□□ -0.66
USP48-213ENST00000529637 ZNF502Q8TBZ5 544 aa10.96□□□□□ -0.66
USP48-213ENST00000529637 UBTD1Q9HAC8 227 aa10.96□□□□□ -0.66
USP48-213ENST00000529637 IGLV11-55A0A075B6I3 123 aa10.95□□□□□ -0.66
USP48-213ENST00000529637 SRSF1Q07955 248 aaKnown RBP eCLIP10.95□□□□□ -0.663e-8■■■□□ 14.8
USP48-213ENST00000529637 FBXL19-AS1Q494R0 122 aa10.95□□□□□ -0.66
USP48-213ENST00000529637 NPBQ8NG41 125 aa10.95□□□□□ -0.66
USP48-213ENST00000529637 CYSLTR1Q9Y271 337 aa10.95□□□□□ -0.66
USP48-213ENST00000529637 IGLV2-18A0A075B6J9 118 aa10.95□□□□□ -0.66
USP48-213ENST00000529637 IGHG4P01861 327 aa10.95□□□□□ -0.66
USP48-213ENST00000529637 RPL7P18124 248 aaKnown RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 121.7 ms