RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 TMEM75Q8N9X5 138 aa10.44□□□□□ -0.74
TCOF1-213ENST00000514442 MEIG1Q5JSS6 88 aa10.44□□□□□ -0.74
TCOF1-213ENST00000514442 FXYD5Q96DB9 178 aa10.44□□□□□ -0.74
TCOF1-213ENST00000514442 OVOL1O14753 267 aa10.43□□□□□ -0.74
TCOF1-213ENST00000514442 DUSP14O95147 198 aaKnown RBP10.43□□□□□ -0.74
TCOF1-213ENST00000514442 LTAP01374 205 aa10.43□□□□□ -0.74
TCOF1-213ENST00000514442 LINC00310P59036 64 aa10.43□□□□□ -0.74
TCOF1-213ENST00000514442 PCDH15Q96QU1 1955 aa10.43□□□□□ -0.74
TCOF1-213ENST00000514442 OVOL3O00110 214 aa10.43□□□□□ -0.74
TCOF1-213ENST00000514442 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.43□□□□□ -0.74
TCOF1-213ENST00000514442 C22orf46C9J442 243 aa10.43□□□□□ -0.74
TCOF1-213ENST00000514442 CRIP3Q6Q6R5 217 aa10.43□□□□□ -0.74
TCOF1-213ENST00000514442 C2orf82Q6UX34 121 aa10.43□□□□□ -0.74
TCOF1-213ENST00000514442 LYPD1Q8N2G4 141 aa10.43□□□□□ -0.74
TCOF1-213ENST00000514442 HIGD1BQ9P298 99 aa10.43□□□□□ -0.74
TCOF1-213ENST00000514442 FOXI1Q12951 378 aa10.43□□□□□ -0.74
TCOF1-213ENST00000514442 COPS9Q8WXC6 57 aa10.43□□□□□ -0.74
TCOF1-213ENST00000514442 CTSZQ9UBR2 303 aa10.43□□□□□ -0.74
TCOF1-213ENST00000514442 IGHV1-69DA0A0B4J2H0 117 aa10.42□□□□□ -0.74
TCOF1-213ENST00000514442 IGHV1-69P01742 117 aa10.42□□□□□ -0.74
TCOF1-213ENST00000514442 C9orf153Q5TBE3 101 aa10.42□□□□□ -0.74
TCOF1-213ENST00000514442 Q96MF0 132 aa10.42□□□□□ -0.74
TCOF1-213ENST00000514442 KIAA1549LQ6ZVL6 1849 aa10.42□□□□□ -0.74
TCOF1-213ENST00000514442 MED13Q9UHV7 2174 aa10.42□□□□□ -0.74
TCOF1-213ENST00000514442 CIRBPQ14011 172 aaKnown RBP10.42□□□□□ -0.74
TCOF1-213ENST00000514442 KLHL30-AS1Q8NEE0 82 aa10.42□□□□□ -0.74
TCOF1-213ENST00000514442 SPAG8Q99932 426 aaPredicted RBP10.42□□□□□ -0.74
TCOF1-213ENST00000514442 NOTCH3Q9UM47 2321 aa10.42□□□□□ -0.74
TCOF1-213ENST00000514442 PRB1P04280 392 aa10.42□□□□□ -0.74
TCOF1-213ENST00000514442 ABCA1O95477 2261 aa10.42□□□□□ -0.74
TCOF1-213ENST00000514442 TRBV25-1A0A075B6N4 114 aa10.42□□□□□ -0.74
TCOF1-213ENST00000514442 SRRM4A7MD48 611 aaKnown RBP10.42□□□□□ -0.74
TCOF1-213ENST00000514442 IGLV2-14P01704 120 aa10.42□□□□□ -0.74
TCOF1-213ENST00000514442 CREBBPQ92793 2442 aa10.41□□□□□ -0.74
TCOF1-213ENST00000514442 WT1-ASQ06250 92 aa10.41□□□□□ -0.74
TCOF1-213ENST00000514442 RHPN1-AS1Q9BWJ2 59 aa10.41□□□□□ -0.74
TCOF1-213ENST00000514442 C16orf54Q6UWD8 224 aa10.41□□□□□ -0.74
TCOF1-213ENST00000514442 ERCC8Q13216 396 aa10.41□□□□□ -0.74
TCOF1-213ENST00000514442 IGF2-ASQ6U949 168 aa10.41□□□□□ -0.74
TCOF1-213ENST00000514442 Q8N8P6 123 aa10.41□□□□□ -0.74
TCOF1-213ENST00000514442 TRAV12-3A0A0B4J271 114 aa10.4□□□□□ -0.74
TCOF1-213ENST00000514442 NPYP01303 97 aa10.4□□□□□ -0.74
TCOF1-213ENST00000514442 SYNJ2BPP57105 145 aa10.4□□□□□ -0.74
TCOF1-213ENST00000514442 RNF183Q96D59 192 aa10.4□□□□□ -0.74
TCOF1-213ENST00000514442 PRSS29PA6NIE9 313 aa10.4□□□□□ -0.74
TCOF1-213ENST00000514442 OR11H6Q8NGC7 330 aa10.4□□□□□ -0.74
TCOF1-213ENST00000514442 IGHV3-73A0A0B4J1V6 119 aa10.4□□□□□ -0.74
TCOF1-213ENST00000514442 FAM223BA6NKX1 122 aa10.4□□□□□ -0.74
TCOF1-213ENST00000514442 ANXA2RQ3ZCQ2 193 aa10.4□□□□□ -0.74
TCOF1-213ENST00000514442 SEM1Q6ZVN7 128 aa10.4□□□□□ -0.74
TCOF1-213ENST00000514442 FAM223AQ8IWN6 122 aa10.4□□□□□ -0.74
TCOF1-213ENST00000514442 ATP6V0E2Q8NHE4 81 aa10.4□□□□□ -0.74
TCOF1-213ENST00000514442 USMG5Q96IX5 58 aa10.4□□□□□ -0.74
TCOF1-213ENST00000514442 SHANK2-AS3Q9BTD1 123 aa10.4□□□□□ -0.74
TCOF1-213ENST00000514442 MRPL35Q9NZE8 188 aaKnown RBP10.4□□□□□ -0.74
TCOF1-213ENST00000514442 IGKV3D-20A0A0C4DH25 116 aa10.4□□□□□ -0.75
TCOF1-213ENST00000514442 H3BMM0 161 aa10.4□□□□□ -0.75
TCOF1-213ENST00000514442 Q6ZPA2 131 aa10.4□□□□□ -0.75
TCOF1-213ENST00000514442 NEGR1Q7Z3B1 354 aa10.4□□□□□ -0.75
TCOF1-213ENST00000514442 RNF182Q8N6D2 247 aa10.4□□□□□ -0.75
TCOF1-213ENST00000514442 UBE2WQ96B02 151 aa10.4□□□□□ -0.75
TCOF1-213ENST00000514442 TMEM101Q96IK0 257 aa10.4□□□□□ -0.75
TCOF1-213ENST00000514442 SPANXB1Q9NS25 103 aaPredicted RBP10.4□□□□□ -0.75
TCOF1-213ENST00000514442 KRTAP27-1Q3LI81 207 aa10.39□□□□□ -0.75
TCOF1-213ENST00000514442 FAM120AOSQ5T036 256 aa10.39□□□□□ -0.75
TCOF1-213ENST00000514442 C9orf139Q6ZV77 190 aa10.39□□□□□ -0.75
TCOF1-213ENST00000514442 FREM1Q5H8C1 2179 aa10.39□□□□□ -0.75
TCOF1-213ENST00000514442 LINC00311Q8N616 119 aa10.38□□□□□ -0.75
TCOF1-213ENST00000514442 FAM110DQ8TAY7 271 aaPredicted RBP10.38□□□□□ -0.75
TCOF1-213ENST00000514442 SLC25A20O43772 301 aa10.38□□□□□ -0.75
TCOF1-213ENST00000514442 GDF5OSQ5U4N7 250 aa10.38□□□□□ -0.75
TCOF1-213ENST00000514442 IL17RELQ6ZVW7 336 aa10.38□□□□□ -0.75
TCOF1-213ENST00000514442 C8orf49Q96NF6 230 aa10.38□□□□□ -0.75
TCOF1-213ENST00000514442 Q71RC1 249 aaPredicted RBP10.37□□□□□ -0.75
TCOF1-213ENST00000514442 GTSF1Q8WW33 167 aa10.37□□□□□ -0.75
TCOF1-213ENST00000514442 TOMM7Q9P0U1 55 aa10.37□□□□□ -0.75
TCOF1-213ENST00000514442 CUL9Q8IWT3 2517 aa10.37□□□□□ -0.75
TCOF1-213ENST00000514442 RPL35AP18077 110 aaKnown RBP10.37□□□□□ -0.75
TCOF1-213ENST00000514442 TRGV11A0A075B6L2 103 aa10.37□□□□□ -0.75
TCOF1-213ENST00000514442 A0A1B0GXF2 115 aa10.37□□□□□ -0.75
TCOF1-213ENST00000514442 HERV-K104P63124 156 aa10.37□□□□□ -0.75
TCOF1-213ENST00000514442 IGLV2-8P01709 118 aa10.37□□□□□ -0.75
TCOF1-213ENST00000514442 SPANXDQ9BXN6 97 aa10.37□□□□□ -0.75
TCOF1-213ENST00000514442 DAZ1Q9NQZ3 744 aaKnown RBP10.37□□□□□ -0.75
TCOF1-213ENST00000514442 KAAG1Q9UBP8 84 aa10.37□□□□□ -0.75
TCOF1-213ENST00000514442 CR1LQ2VPA4 569 aa10.36□□□□□ -0.75
TCOF1-213ENST00000514442 TEN1Q86WV5 123 aa10.36□□□□□ -0.75
TCOF1-213ENST00000514442 EDA2RQ9HAV5 297 aa10.36□□□□□ -0.75
TCOF1-213ENST00000514442 TMEM131Q92545 1883 aa10.36□□□□□ -0.75
TCOF1-213ENST00000514442 PTPRQQ9UMZ3 2332 aa10.36□□□□□ -0.75
TCOF1-213ENST00000514442 C15orf53Q8NAA6 179 aa10.36□□□□□ -0.75
TCOF1-213ENST00000514442 M0R2P5 195 aa10.36□□□□□ -0.75
TCOF1-213ENST00000514442 TRGV4A0A0C4DH28 118 aa10.36□□□□□ -0.75
TCOF1-213ENST00000514442 UBE2E2Q96LR5 201 aa10.36□□□□□ -0.75
TCOF1-213ENST00000514442 SPATA25Q9BR10 227 aa10.36□□□□□ -0.75
TCOF1-213ENST00000514442 C20orf78Q9BR46 151 aa10.36□□□□□ -0.75
TCOF1-213ENST00000514442 K7EMI3 77 aa10.35□□□□□ -0.75
TCOF1-213ENST00000514442 DNAL4O96015 105 aa10.35□□□□□ -0.75
TCOF1-213ENST00000514442 Q6ZUT4 128 aa10.35□□□□□ -0.75
TCOF1-213ENST00000514442 THAP8Q8NA92 274 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 119.7 ms