RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 C6orf52Q5T4I8 152 aa1.41□□□□□ -2.18
USP53-204ENST00000507906 DCUN1D2Q6PH85 259 aa1.41□□□□□ -2.18
USP53-204ENST00000507906 LINC00299Q6ZSB3 139 aa1.41□□□□□ -2.18
USP53-204ENST00000507906 PHF13Q86YI8 300 aaPredicted RBP1.41□□□□□ -2.18
USP53-204ENST00000507906 PYDC1Q8WXC3 89 aa1.41□□□□□ -2.18
USP53-204ENST00000507906 S100ZQ8WXG8 99 aa1.41□□□□□ -2.18
USP53-204ENST00000507906 MALSU1Q96EH3 234 aa1.41□□□□□ -2.18
USP53-204ENST00000507906 YPEL2Q96QA6 119 aa1.41□□□□□ -2.18
USP53-204ENST00000507906 RETNLBQ9BQ08 111 aa1.41□□□□□ -2.18
USP53-204ENST00000507906 NAA38Q9BRA0 125 aaKnown RBP1.41□□□□□ -2.18
USP53-204ENST00000507906 MAP1LC3BQ9GZQ8 125 aa1.41□□□□□ -2.18
USP53-204ENST00000507906 Q9H521 79 aa1.41□□□□□ -2.18
USP53-204ENST00000507906 NHP2Q9NX24 153 aaKnown RBP1.41□□□□□ -2.18
USP53-204ENST00000507906 COA4Q9NYJ1 87 aa1.41□□□□□ -2.18
USP53-204ENST00000507906 GINS2Q9Y248 185 aa1.41□□□□□ -2.18
USP53-204ENST00000507906 RTL9Q8NET4 1388 aa1.41□□□□□ -2.18
USP53-204ENST00000507906 COL1A1P02452 1464 aaPredicted RBP1.41□□□□□ -2.18
USP53-204ENST00000507906 PLXNB2O15031 1838 aa1.4□□□□□ -2.18
USP53-204ENST00000507906 A0A087WXM4 84 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 IGKV2D-26A0A0A0MRZ7 120 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 A0A1B0GV72 72 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 A0A1W2PRE2 83 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 TLCD2A6NGC4 264 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 HCRTO43612 131 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 MRPS14O60783 128 aaKnown RBP1.4□□□□□ -2.19
USP53-204ENST00000507906 IGLV1-51P01701 117 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 TRAPPC2P0DI81 140 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 TRAPPC2BP0DI82 140 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 BRS3P32247 399 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 RAB4BP61018 213 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 COPZ1P61923 177 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 C4orf33Q8N1A6 199 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 NUP35Q8NFH5 326 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 GRPEL2Q8TAA5 225 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 TEX47Q8TBZ9 253 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 SFT2D1Q8WV19 159 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 TEX37Q96LM6 180 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 C12orf57Q99622 126 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 POPDC3Q9HBV1 291 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 OTORQ9NRC9 128 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 OR5AC2Q9NZP5 309 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 CHD3Q12873 2000 aaKnown RBP1.4□□□□□ -2.19
USP53-204ENST00000507906 ZNF236Q9UL36 1845 aa1.4□□□□□ -2.19
USP53-204ENST00000507906 OBSL1O75147 1896 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 PLXNA1Q9UIW2 1896 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 LOC285556D6RIA3 1793 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 XIRP1Q702N8 1843 aaKnown RBP1.39□□□□□ -2.19
USP53-204ENST00000507906 A0A0G2JND7 137 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 FAM25AB3EWG3 89 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 FAM25CB3EWG5 89 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 FAM25GB3EWG6 89 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 F8W036 122 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 APOA2P02652 100 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 HLA-EP13747 358 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 XAF1Q6GPH4 301 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.39□□□□□ -2.19
USP53-204ENST00000507906 SNX29P2Q8IUI4 249 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 CLECL1Q8IZS7 167 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 TMEM35BQ8NCS4 154 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 C6orf62Q9GZU0 229 aaPredicted RBP1.39□□□□□ -2.19
USP53-204ENST00000507906 C14orf132Q9NPU4 83 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 MED11Q9P086 117 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 NDUFAF1Q9Y375 327 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 AP4S1Q9Y587 144 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 LY75O60449 1722 aa1.39□□□□□ -2.19
USP53-204ENST00000507906 DOCK4Q8N1I0 1966 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 PLXNA4Q9HCM2 1894 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 TRBV6-8A0A0A6YYG3 113 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 TCRBV3S1A0A5B6 114 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 EFCAB10A6NFE3 127 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 A8MWV9 139 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 APOC1P02654 83 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 IL7P13232 177 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 ETV6P41212 452 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 CNBPP62633 177 aaKnown RBP1.38□□□□□ -2.19
USP53-204ENST00000507906 RTL8BQ17RB0 113 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 KRTAP21-2Q3LI59 83 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 C1orf137Q5JT78 98 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 CLLU1Q5K131 121 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 C1orf140Q5VVS0 124 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 EIF5AL1Q6IS14 154 aaKnown RBP1.38□□□□□ -2.19
USP53-204ENST00000507906 UNQ6190/PRO20217Q6UXQ8 127 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 DEFB107AQ8IZN7 70 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 TCTE3Q8IZS6 198 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 SREK1IP1Q8N9Q2 155 aaPredicted RBP1.38□□□□□ -2.19
USP53-204ENST00000507906 PPTC7Q8NI37 304 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 RTL8AQ9BWD3 113 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 TAF9BQ9HBM6 251 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 CHCHD2Q9Y6H1 151 aaPredicted RBP1.38□□□□□ -2.19
USP53-204ENST00000507906 ATG2AQ2TAZ0 1938 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 ANAPC1Q9H1A4 1944 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 EML5Q05BV3 1969 aa1.38□□□□□ -2.19
USP53-204ENST00000507906 PLXNA2O75051 1894 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 UBR3Q6ZT12 1888 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 PLIN4Q96Q06 1357 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 TMEM2Q9UHN6 1383 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 FAM92AA1XBS5 289 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 PROSCO94903 275 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 IFNA21P01568 189 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 IFNA4P05014 189 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms