RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 A0A1B0GUS0 222 aa4.39□□□□□ -1.71
PTPRB-202ENST00000334414 MBD3L4A6NDZ8 208 aaPredicted RBP4.39□□□□□ -1.71
PTPRB-202ENST00000334414 MBD3L3A6NE82 208 aaPredicted RBP4.39□□□□□ -1.71
PTPRB-202ENST00000334414 MBD3L5A6NJ08 208 aaPredicted RBP4.39□□□□□ -1.71
PTPRB-202ENST00000334414 MBD3L2Q8NHZ7 208 aaPredicted RBP4.39□□□□□ -1.71
PTPRB-202ENST00000334414 POLR2AP24928 1970 aaKnown RBP4.39□□□□□ -1.71
PTPRB-202ENST00000334414 LTBP1Q14766 1721 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 FAM27E3Q08E93 113 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 C9orf106Q8NAJ2 232 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 UBE2AP49459 152 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 FHL1Q13642 323 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 HIGD2BQ4VC39 106 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 RLFQ13129 1914 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 IGHV3OR16-8A0A075B7F1 116 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 UPK3BQ9BT76 320 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 TINCRA0A1B0GVN0 87 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 MRPL36Q9P0J6 103 aaKnown RBP4.38□□□□□ -1.71
PTPRB-202ENST00000334414 MDFICQ9P1T7 246 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 WDR81Q562E7 1941 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 PFN2P35080 140 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 Q8NFD4 153 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 CKAP5Q14008 2032 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 CACNA1CQ13936 2221 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 KIF26BQ2KJY2 2108 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 Q6ZRM9 215 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 ZNF672Q499Z4 452 aaPredicted RBP4.38□□□□□ -1.71
PTPRB-202ENST00000334414 BAALCQ8WXS3 180 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 TM2D2Q9BX73 214 aa4.38□□□□□ -1.71
PTPRB-202ENST00000334414 TRAV26-2A0A0B4J265 109 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 IGKV1-6A0A0C4DH72 117 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 IGHV7-4-1A0A0J9YVY3 117 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 FAM201AQ5SY85 155 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 LINC01356Q8N9X3 169 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 NDUFS5O43920 106 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 TRBV12-3P01733 135 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 NDPQ00604 133 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 TMEM61Q8N0U2 210 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 C1orf147Q96MC9 270 aaPredicted RBP4.37□□□□□ -1.71
PTPRB-202ENST00000334414 PTPRDP23468 1912 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 PCP2Q8IVA1 136 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 DAD1P61803 113 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 CSRP2Q16527 193 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 MSRB2Q9Y3D2 182 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 LINC01560Q8TB33 94 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 DKK1O94907 266 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 FANCD2OSQ96PS1 177 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 SPRR3Q9UBC9 169 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 MIAQ16674 131 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 ANXA2RQ3ZCQ2 193 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 SND1-IT1Q9HBX3 110 aa4.37□□□□□ -1.71
PTPRB-202ENST00000334414 NCKAP5O14513 1909 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 GP9P14770 177 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 HELZP42694 1942 aaKnown RBP4.36□□□□□ -1.71
PTPRB-202ENST00000334414 OVOL3O00110 214 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 IGLV3-1P01715 115 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 C10orf55Q5SWW7 151 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 C16orf74Q96GX8 76 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 SERP2Q8N6R1 65 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 NUP210Q8TEM1 1887 aaPredicted RBP4.36□□□□□ -1.71
PTPRB-202ENST00000334414 KAAG1Q9UBP8 84 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 HTN3P15516 51 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 KIF26AQ9ULI4 1882 aaPredicted RBP4.36□□□□□ -1.71
PTPRB-202ENST00000334414 PATE3B3GLJ2 98 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 COX7A2LO14548 114 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 ODF1Q14990 250 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 TANC1Q9C0D5 1861 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 FXYD2P54710 66 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 HIST2H2BCQ6DN03 193 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 HIST2H2BDQ6DRA6 164 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 U3KQE9 123 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 ZNF106Q9H2Y7 1883 aaKnown RBP4.36□□□□□ -1.71
PTPRB-202ENST00000334414 PRR30Q53SZ7 412 aaPredicted RBP4.36□□□□□ -1.71
PTPRB-202ENST00000334414 PIP4P2Q8N4L2 257 aa4.36□□□□□ -1.71
PTPRB-202ENST00000334414 C15orf65H3BRN8 121 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 FAM120AOSQ5T036 256 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 ZNRF2Q8NHG8 242 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 RALGAPA1Q6GYQ0 2036 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 BLCAPP62952 87 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 HEATR5BQ9P2D3 2071 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 BUB3O43684 328 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 SAA4P35542 130 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 C16orf54Q6UWD8 224 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 MUC7Q8TAX7 377 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 SPAARA0A1B0GVQ0 90 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.35□□□□□ -1.71
PTPRB-202ENST00000334414 B3GALT5-AS1P59052 145 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 RNF138Q8WVD3 245 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 TCL1BO95988 128 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 C9orf47Q6ZRZ4 202 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 KLHL30-AS1Q8NEE0 82 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 C14orf132Q9NPU4 83 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 IGHV3OR16-10A0A075B7F0 116 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 ATP6V0E1O15342 81 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 TP53BP1Q12888 1972 aaPredicted RBP4.35□□□□□ -1.71
PTPRB-202ENST00000334414 WT1-ASQ06250 92 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 RNF183Q96D59 192 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 IGKV1-39P01597 117 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 IGKV1D-39P04432 117 aa4.35□□□□□ -1.71
PTPRB-202ENST00000334414 A0A1W2PRX2 142 aa4.34□□□□□ -1.71
PTPRB-202ENST00000334414 EFNA2O43921 213 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms