RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 HBDP02042 147 aa12.38□□□□□ -0.43
USHBP1-202ENST00000324554 RAB9AP51151 201 aa12.38□□□□□ -0.43
USHBP1-202ENST00000324554 ERCC8Q13216 396 aa12.38□□□□□ -0.43
USHBP1-202ENST00000324554 LGALS9BQ3B8N2 356 aa12.38□□□□□ -0.43
USHBP1-202ENST00000324554 LGALS9CQ6DKI2 356 aa12.38□□□□□ -0.43
USHBP1-202ENST00000324554 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.38□□□□□ -0.43
USHBP1-202ENST00000324554 IGHV3-66A0A0C4DH42 116 aa12.38□□□□□ -0.43
USHBP1-202ENST00000324554 CD5LO43866 347 aa12.38□□□□□ -0.43
USHBP1-202ENST00000324554 AMMECR1LQ6DCA0 310 aa12.38□□□□□ -0.43
USHBP1-202ENST00000324554 RNF182Q8N6D2 247 aa12.38□□□□□ -0.43
USHBP1-202ENST00000324554 ABCA12Q86UK0 2595 aa12.37□□□□□ -0.43
USHBP1-202ENST00000324554 IGHV4-30-2A0A087WSY4 118 aa12.37□□□□□ -0.43
USHBP1-202ENST00000324554 ORM1P02763 201 aa12.37□□□□□ -0.43
USHBP1-202ENST00000324554 RNF185Q96GF1 192 aa12.37□□□□□ -0.43
USHBP1-202ENST00000324554 SPOCK3Q9BQ16 436 aa12.37□□□□□ -0.43
USHBP1-202ENST00000324554 SRSF2Q01130 221 aaKnown RBP12.37□□□□□ -0.43
USHBP1-202ENST00000324554 C21orf62-AS1Q17RA5 79 aa12.37□□□□□ -0.43
USHBP1-202ENST00000324554 PRSS57Q6UWY2 283 aa12.37□□□□□ -0.43
USHBP1-202ENST00000324554 USP9YO00507 2555 aaPredicted RBP12.36□□□□□ -0.43
USHBP1-202ENST00000324554 WFDC3Q8IUB2 231 aa12.36□□□□□ -0.43
USHBP1-202ENST00000324554 C5orf56Q8N8D9 126 aa12.36□□□□□ -0.43
USHBP1-202ENST00000324554 DPF1Q92782 380 aa12.36□□□□□ -0.43
USHBP1-202ENST00000324554 EEF1AKMT3Q96AZ1 226 aa12.36□□□□□ -0.43
USHBP1-202ENST00000324554 PTPN13Q12923 2485 aa12.36□□□□□ -0.43
USHBP1-202ENST00000324554 IGHV3OR16-13A0A075B7E8 117 aa12.36□□□□□ -0.43
USHBP1-202ENST00000324554 IGHV3-74A0A0B4J1X5 117 aa12.36□□□□□ -0.43
USHBP1-202ENST00000324554 TRAV8-6A0A0B4J262 113 aa12.36□□□□□ -0.43
USHBP1-202ENST00000324554 IFI27L1Q96BM0 104 aa12.36□□□□□ -0.43
USHBP1-202ENST00000324554 SLC50A1Q9BRV3 221 aa12.36□□□□□ -0.43
USHBP1-202ENST00000324554 TENM4Q6N022 2769 aa12.35□□□□□ -0.43
USHBP1-202ENST00000324554 RBAKDNA6NC62 111 aa12.35□□□□□ -0.43
USHBP1-202ENST00000324554 FABP5P3A8MUU1 101 aa12.35□□□□□ -0.43
USHBP1-202ENST00000324554 COX6B1P14854 86 aa12.35□□□□□ -0.43
USHBP1-202ENST00000324554 TMEM97Q5BJF2 176 aa12.35□□□□□ -0.43
USHBP1-202ENST00000324554 ANKRD17O75179 2603 aaKnown RBP12.35□□□□□ -0.43
USHBP1-202ENST00000324554 PPIFP30405 207 aaKnown RBP12.35□□□□□ -0.43
USHBP1-202ENST00000324554 PCP4P48539 62 aa12.35□□□□□ -0.43
USHBP1-202ENST00000324554 IL17RELQ6ZVW7 336 aa12.35□□□□□ -0.43
USHBP1-202ENST00000324554 C10orf105Q8TEF2 133 aa12.35□□□□□ -0.43
USHBP1-202ENST00000324554 PIMREGQ9BSJ6 248 aa12.35□□□□□ -0.43
USHBP1-202ENST00000324554 CNFNQ9BYD5 112 aa12.35□□□□□ -0.43
USHBP1-202ENST00000324554 TRBV7-1A0A0A6YYK4 115 aa12.34□□□□□ -0.43
USHBP1-202ENST00000324554 KRTAP10-9P60411 292 aa12.34□□□□□ -0.43
USHBP1-202ENST00000324554 TMEM219Q86XT9 240 aa12.34□□□□□ -0.43
USHBP1-202ENST00000324554 BOD1L2Q8IYS8 172 aa12.34□□□□□ -0.43
USHBP1-202ENST00000324554 C7orf71A4D174 169 aa12.33□□□□□ -0.43
USHBP1-202ENST00000324554 LINC01559Q495D7 138 aa12.33□□□□□ -0.43
USHBP1-202ENST00000324554 CLEC2AQ6UVW9 174 aa12.33□□□□□ -0.43
USHBP1-202ENST00000324554 OR1N2Q8NGR9 330 aa12.33□□□□□ -0.43
USHBP1-202ENST00000324554 DKK2Q9UBU2 259 aa12.33□□□□□ -0.43
USHBP1-202ENST00000324554 IGHV3-49A0A0A0MS15 119 aa12.33□□□□□ -0.44
USHBP1-202ENST00000324554 C18orf15Q96N68 181 aa12.33□□□□□ -0.44
USHBP1-202ENST00000324554 METTL26Q96S19 204 aa12.33□□□□□ -0.44
USHBP1-202ENST00000324554 NBPF19A0A087WUL8 3843 aa12.32□□□□□ -0.44
USHBP1-202ENST00000324554 TRAV8-2A0A0B4J237 113 aa12.32□□□□□ -0.44
USHBP1-202ENST00000324554 ZNF207O43670 478 aaKnown RBP12.32□□□□□ -0.44
USHBP1-202ENST00000324554 MAPK1IP1LQ8NDC0 245 aa12.32□□□□□ -0.44
USHBP1-202ENST00000324554 ZANQ9Y493 2812 aa12.32□□□□□ -0.44
USHBP1-202ENST00000324554 GATA1P15976 413 aaPredicted RBP12.32□□□□□ -0.44
USHBP1-202ENST00000324554 EVI2AP22794 236 aa12.32□□□□□ -0.44
USHBP1-202ENST00000324554 AGPAT4-IT1Q9H0P7 198 aa12.32□□□□□ -0.44
USHBP1-202ENST00000324554 SMAD7O15105 426 aaKnown RBP12.31□□□□□ -0.44
USHBP1-202ENST00000324554 SEC11AP67812 179 aa12.31□□□□□ -0.44
USHBP1-202ENST00000324554 HIST2H2BCQ6DN03 193 aa12.31□□□□□ -0.44
USHBP1-202ENST00000324554 PCP2Q8IVA1 136 aa12.31□□□□□ -0.44
USHBP1-202ENST00000324554 MAP1LC3AQ9H492 121 aa12.31□□□□□ -0.44
USHBP1-202ENST00000324554 C11orf21Q9P2W6 132 aa12.31□□□□□ -0.44
USHBP1-202ENST00000324554 IGKV3D-20A0A0C4DH25 116 aa12.31□□□□□ -0.44
USHBP1-202ENST00000324554 ATP5G2Q06055 141 aa12.31□□□□□ -0.44
USHBP1-202ENST00000324554 C19orf54Q5BKX5 351 aa12.31□□□□□ -0.44
USHBP1-202ENST00000324554 BRD3OSQ6XYD6 125 aa12.31□□□□□ -0.44
USHBP1-202ENST00000324554 C8orf86Q6ZUL3 223 aa12.31□□□□□ -0.44
USHBP1-202ENST00000324554 PEF1Q9UBV8 284 aaKnown RBP12.31□□□□□ -0.44
USHBP1-202ENST00000324554 MOB4Q9Y3A3 225 aa12.31□□□□□ -0.44
USHBP1-202ENST00000324554 U3KQE9 123 aa12.31□□□□□ -0.44
USHBP1-202ENST00000324554 TNFRSF6BO95407 300 aa12.3□□□□□ -0.44
USHBP1-202ENST00000324554 LINC00527Q9UJ94 153 aa12.3□□□□□ -0.44
USHBP1-202ENST00000324554 DOPEY2Q9Y3R5 2298 aa12.3□□□□□ -0.44
USHBP1-202ENST00000324554 TRAV41A0A0B4J266 112 aa12.3□□□□□ -0.44
USHBP1-202ENST00000324554 LINC01546A6NGU7 62 aa12.3□□□□□ -0.44
USHBP1-202ENST00000324554 CDKN1BP46527 198 aa12.3□□□□□ -0.44
USHBP1-202ENST00000324554 PIFOQ8TCI5 191 aa12.3□□□□□ -0.44
USHBP1-202ENST00000324554 PPBPP02775 128 aa12.29□□□□□ -0.44
USHBP1-202ENST00000324554 LEPP41159 167 aa12.29□□□□□ -0.44
USHBP1-202ENST00000324554 NMUP48645 174 aa12.29□□□□□ -0.44
USHBP1-202ENST00000324554 ADAMTSL5Q6ZMM2 481 aa12.29□□□□□ -0.44
USHBP1-202ENST00000324554 MRPL53Q96EL3 112 aaKnown RBP12.29□□□□□ -0.44
USHBP1-202ENST00000324554 NPFFR1Q9GZQ6 430 aa12.29□□□□□ -0.44
USHBP1-202ENST00000324554 CST9LQ9H4G1 147 aa12.29□□□□□ -0.44
USHBP1-202ENST00000324554 TMEM78Q5T7P6 136 aa12.29□□□□□ -0.44
USHBP1-202ENST00000324554 Q6ZQT7 251 aa12.29□□□□□ -0.44
USHBP1-202ENST00000324554 IGHV1-69DA0A0B4J2H0 117 aa12.28□□□□□ -0.44
USHBP1-202ENST00000324554 IGHV1-69P01742 117 aa12.28□□□□□ -0.44
USHBP1-202ENST00000324554 FAM223BA6NKX1 122 aa12.28□□□□□ -0.44
USHBP1-202ENST00000324554 TRGV3P03979 118 aa12.28□□□□□ -0.44
USHBP1-202ENST00000324554 RNF151Q2KHN1 245 aa12.28□□□□□ -0.44
USHBP1-202ENST00000324554 FAM223AQ8IWN6 122 aa12.28□□□□□ -0.44
USHBP1-202ENST00000324554 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.27□□□□□ -0.44
USHBP1-202ENST00000324554 TRAV40A0A0B4J280 105 aa12.27□□□□□ -0.44
USHBP1-202ENST00000324554 FCER1GP30273 86 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms