RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 ZNF833PQ6ZTB9 187 aa12.8□□□□□ -0.36
GPC1-201ENST00000264039 CSPG4Q6UVK1 2322 aa12.8□□□□□ -0.36
GPC1-201ENST00000264039 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.8□□□□□ -0.36
GPC1-201ENST00000264039 TRGV3P03979 118 aa12.79□□□□□ -0.36
GPC1-201ENST00000264039 PLNP26678 52 aa12.79□□□□□ -0.36
GPC1-201ENST00000264039 C1orf210Q8IVY1 113 aa12.79□□□□□ -0.36
GPC1-201ENST00000264039 ZFHX2Q9C0A1 2572 aaPredicted RBP12.79□□□□□ -0.36
GPC1-201ENST00000264039 TIMM23O14925 209 aa12.79□□□□□ -0.36
GPC1-201ENST00000264039 IL17RELQ6ZVW7 336 aa12.79□□□□□ -0.36
GPC1-201ENST00000264039 ZNF256Q9Y2P7 627 aaPredicted RBP12.79□□□□□ -0.36
GPC1-201ENST00000264039 SLC25A15Q9Y619 301 aa12.79□□□□□ -0.36
GPC1-201ENST00000264039 TMEM262E9PQX1 116 aa12.79□□□□□ -0.36
GPC1-201ENST00000264039 TMEM95Q3KNT9 176 aa12.78□□□□□ -0.36
GPC1-201ENST00000264039 C16orf92Q96LL3 132 aa12.78□□□□□ -0.36
GPC1-201ENST00000264039 TRAV12-3A0A0B4J271 114 aa12.78□□□□□ -0.36
GPC1-201ENST00000264039 TCTEX1D4Q5JR98 221 aa12.78□□□□□ -0.36
GPC1-201ENST00000264039 NTN5Q8WTR8 489 aaPredicted RBP12.78□□□□□ -0.36
GPC1-201ENST00000264039 GAGE12JA6NER3 117 aa12.78□□□□□ -0.36
GPC1-201ENST00000264039 GAGE7O76087 117 aa12.78□□□□□ -0.36
GPC1-201ENST00000264039 ZNF688P0C7X2 276 aa12.78□□□□□ -0.36
GPC1-201ENST00000264039 GAGE12FP0CL80 117 aa12.78□□□□□ -0.36
GPC1-201ENST00000264039 GAGE12GP0CL81 117 aa12.78□□□□□ -0.36
GPC1-201ENST00000264039 GAGE12IP0CL82 117 aa12.78□□□□□ -0.36
GPC1-201ENST00000264039 WT1P19544 449 aaPredicted RBP12.78□□□□□ -0.36
GPC1-201ENST00000264039 ZNF80P51504 273 aaPredicted RBP12.78□□□□□ -0.36
GPC1-201ENST00000264039 GAGE4Q13068 117 aa12.78□□□□□ -0.36
GPC1-201ENST00000264039 PSMG4Q5JS54 123 aa12.77□□□□□ -0.36
GPC1-201ENST00000264039 ZNF491Q8N8L2 437 aa12.77□□□□□ -0.36
GPC1-201ENST00000264039 IGLV2-11P01706 119 aa12.77□□□□□ -0.37
GPC1-201ENST00000264039 PIP4P2Q8N4L2 257 aa12.77□□□□□ -0.37
GPC1-201ENST00000264039 MDS2Q8NDY4 140 aa12.77□□□□□ -0.37
GPC1-201ENST00000264039 SPATA25Q9BR10 227 aa12.77□□□□□ -0.37
GPC1-201ENST00000264039 HIGD1BQ9P298 99 aa12.77□□□□□ -0.37
GPC1-201ENST00000264039 TSPAN13O95857 204 aa12.77□□□□□ -0.37
GPC1-201ENST00000264039 KLRD1Q13241 179 aa12.77□□□□□ -0.37
GPC1-201ENST00000264039 IGHV1-3A0A0C4DH29 117 aa12.76□□□□□ -0.37
GPC1-201ENST00000264039 F8VRH5 84 aa12.76□□□□□ -0.37
GPC1-201ENST00000264039 IGHV1-8P0DP01 117 aa12.76□□□□□ -0.37
GPC1-201ENST00000264039 TDHQ8IZJ6 230 aa12.76□□□□□ -0.37
GPC1-201ENST00000264039 TLN1Q9Y490 2541 aaKnown RBP12.76□□□□□ -0.37
GPC1-201ENST00000264039 C17orf100A8MU93 164 aa12.76□□□□□ -0.37
GPC1-201ENST00000264039 Q8N8P6 123 aa12.76□□□□□ -0.37
GPC1-201ENST00000264039 BOD1L1Q8NFC6 3051 aa12.76□□□□□ -0.37
GPC1-201ENST00000264039 PVRIGQ6DKI7 326 aa12.76□□□□□ -0.37
GPC1-201ENST00000264039 ZNF474Q6S9Z5 364 aaPredicted RBP12.76□□□□□ -0.37
GPC1-201ENST00000264039 ANKRD29Q8N6D5 301 aa12.76□□□□□ -0.37
GPC1-201ENST00000264039 OR11H6Q8NGC7 330 aa12.76□□□□□ -0.37
GPC1-201ENST00000264039 CFAP47Q6ZTR5 3102 aa12.75□□□□□ -0.37
GPC1-201ENST00000264039 TRAV8-4A0A0B4J246 113 aa12.75□□□□□ -0.37
GPC1-201ENST00000264039 A0A0U1RRA0 63 aa12.75□□□□□ -0.37
GPC1-201ENST00000264039 CGB3P0DN86 165 aa12.75□□□□□ -0.37
GPC1-201ENST00000264039 CGB7P0DN87 165 aa12.75□□□□□ -0.37
GPC1-201ENST00000264039 C1orf162Q8NEQ5 155 aaPredicted RBP12.75□□□□□ -0.37
GPC1-201ENST00000264039 A0A087WX48 190 aa12.75□□□□□ -0.37
GPC1-201ENST00000264039 SLC25A20O43772 301 aa12.75□□□□□ -0.37
GPC1-201ENST00000264039 NDPQ00604 133 aa12.75□□□□□ -0.37
GPC1-201ENST00000264039 GFRALQ6UXV0 394 aa12.75□□□□□ -0.37
GPC1-201ENST00000264039 TM2D2Q9BX73 214 aa12.75□□□□□ -0.37
GPC1-201ENST00000264039 CITED1Q99966 193 aa12.75□□□□□ -0.37
GPC1-201ENST00000264039 IGKV3-20P01619 116 aa12.74□□□□□ -0.37
GPC1-201ENST00000264039 C2orf66Q6UXQ4 117 aa12.74□□□□□ -0.37
GPC1-201ENST00000264039 ERG28Q9UKR5 140 aa12.74□□□□□ -0.37
GPC1-201ENST00000264039 HHLA3Q9XRX5 114 aa12.74□□□□□ -0.37
GPC1-201ENST00000264039 TEN1Q86WV5 123 aa12.74□□□□□ -0.37
GPC1-201ENST00000264039 TCF15Q12870 199 aa12.74□□□□□ -0.37
GPC1-201ENST00000264039 ADIPOQQ15848 244 aa12.74□□□□□ -0.37
GPC1-201ENST00000264039 RAB1BQ9H0U4 201 aa12.74□□□□□ -0.37
GPC1-201ENST00000264039 ZNF56Q15929 161 aa12.73□□□□□ -0.37
GPC1-201ENST00000264039 TRPT1Q86TN4 253 aaKnown RBP12.73□□□□□ -0.37
GPC1-201ENST00000264039 WI2-2373I1.2A0A1W2PRP0 233 aa12.73□□□□□ -0.37
GPC1-201ENST00000264039 BSPH1Q075Z2 132 aa12.73□□□□□ -0.37
GPC1-201ENST00000264039 DYNAPQ8N1N2 210 aa12.73□□□□□ -0.37
GPC1-201ENST00000264039 CFHR4Q92496 578 aa12.73□□□□□ -0.37
GPC1-201ENST00000264039 CLEC19AQ6UXS0 136 aa12.73□□□□□ -0.37
GPC1-201ENST00000264039 ADARB2-AS1A8MUL3 147 aa12.72□□□□□ -0.37
GPC1-201ENST00000264039 H3BRN7 92 aa12.72□□□□□ -0.37
GPC1-201ENST00000264039 IFITM1P13164 125 aa12.72□□□□□ -0.37
GPC1-201ENST00000264039 MEIG1Q5JSS6 88 aa12.72□□□□□ -0.37
GPC1-201ENST00000264039 PRAC2D3DTV9 90 aa12.72□□□□□ -0.37
GPC1-201ENST00000264039 C16orf97H3BN30 126 aa12.72□□□□□ -0.37
GPC1-201ENST00000264039 LY6HO94772 140 aa12.72□□□□□ -0.37
GPC1-201ENST00000264039 LINC00527Q9UJ94 153 aa12.72□□□□□ -0.37
GPC1-201ENST00000264039 NFE4Q86UQ8 179 aa12.72□□□□□ -0.37
GPC1-201ENST00000264039 PLEKHB2Q96CS7 222 aa12.72□□□□□ -0.37
GPC1-201ENST00000264039 TMEM14CQ9P0S9 112 aa12.72□□□□□ -0.37
GPC1-201ENST00000264039 TCL1BO95988 128 aa12.71□□□□□ -0.37
GPC1-201ENST00000264039 TMEM30BQ3MIR4 351 aa12.71□□□□□ -0.37
GPC1-201ENST00000264039 LYPD1Q8N2G4 141 aa12.71□□□□□ -0.37
GPC1-201ENST00000264039 C15orf53Q8NAA6 179 aa12.71□□□□□ -0.37
GPC1-201ENST00000264039 IGLV2-23P01705 113 aa12.71□□□□□ -0.37
GPC1-201ENST00000264039 ORMDL2Q53FV1 153 aa12.71□□□□□ -0.37
GPC1-201ENST00000264039 C10orf126Q8N4M7 172 aa12.71□□□□□ -0.38
GPC1-201ENST00000264039 RPL39LQ96EH5 51 aaKnown RBP12.71□□□□□ -0.38
GPC1-201ENST00000264039 IGKV3D-20A0A0C4DH25 116 aa12.7□□□□□ -0.38
GPC1-201ENST00000264039 LINC01548A6NM66 108 aa12.7□□□□□ -0.38
GPC1-201ENST00000264039 LHBP01229 141 aa12.7□□□□□ -0.38
GPC1-201ENST00000264039 LGALS1P09382 135 aaKnown RBP12.7□□□□□ -0.38
GPC1-201ENST00000264039 TAL2Q16559 108 aa12.7□□□□□ -0.38
GPC1-201ENST00000264039 ZNF493Q6ZR52 646 aa12.7□□□□□ -0.38
GPC1-201ENST00000264039 PRSS33Q8NF86 280 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms