RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 TNFRSF6BO95407 300 aa11.02□□□□□ -0.65
LDB3-209ENST00000623056 IGLV1-47P01700 117 aa11.02□□□□□ -0.65
LDB3-209ENST00000623056 SRSF1Q07955 248 aaKnown RBP eCLIP11.02□□□□□ -0.65
LDB3-209ENST00000623056 ZNF479Q96JC4 524 aa11.02□□□□□ -0.65
LDB3-209ENST00000623056 SPATA25Q9BR10 227 aa11.02□□□□□ -0.65
LDB3-209ENST00000623056 SPTBN2O15020 2390 aa11.02□□□□□ -0.65
LDB3-209ENST00000623056 MGAQ8IWI9 3026 aa11.01□□□□□ -0.65
LDB3-209ENST00000623056 A0A1B0GV72 72 aa11.01□□□□□ -0.65
LDB3-209ENST00000623056 H3BMG7 143 aa11.01□□□□□ -0.65
LDB3-209ENST00000623056 CNIH1O95406 144 aa11.01□□□□□ -0.65
LDB3-209ENST00000623056 KLF17Q5JT82 389 aaPredicted RBP11.01□□□□□ -0.65
LDB3-209ENST00000623056 CCDC144NLQ6NUI1 221 aa11.01□□□□□ -0.65
LDB3-209ENST00000623056 TMEM108Q6UXF1 575 aa11.01□□□□□ -0.65
LDB3-209ENST00000623056 SH2D6Q7Z4S9 175 aa11.01□□□□□ -0.65
LDB3-209ENST00000623056 TMEM158Q8WZ71 300 aa11.01□□□□□ -0.65
LDB3-209ENST00000623056 ARPC1AQ92747 370 aa11.01□□□□□ -0.65
LDB3-209ENST00000623056 SPAG8Q99932 426 aaPredicted RBP11.01□□□□□ -0.65
LDB3-209ENST00000623056 BUB1B-PAK6H3BSN5 160 aa11.01□□□□□ -0.65
LDB3-209ENST00000623056 HLA-DRB4P13762 266 aa11.01□□□□□ -0.65
LDB3-209ENST00000623056 ETDBQ3ZM63 59 aa11.01□□□□□ -0.65
LDB3-209ENST00000623056 ATP6V0BQ99437 205 aa11.01□□□□□ -0.65
LDB3-209ENST00000623056 HLA-DRB4X5D2U9 266 aa11.01□□□□□ -0.65
LDB3-209ENST00000623056 ATP5LO75964 103 aa11□□□□□ -0.65
LDB3-209ENST00000623056 BMI1P35226 326 aa11□□□□□ -0.65
LDB3-209ENST00000623056 MAPKAPK5-AS1Q8N8E1 139 aa11□□□□□ -0.65
LDB3-209ENST00000623056 SRSF8Q9BRL6 282 aaKnown RBP11□□□□□ -0.65
LDB3-209ENST00000623056 PKDREJQ9NTG1 2253 aa11□□□□□ -0.65
LDB3-209ENST00000623056 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11□□□□□ -0.65
LDB3-209ENST00000623056 GATA1P15976 413 aaPredicted RBP11□□□□□ -0.65
LDB3-209ENST00000623056 C12orf74Q32Q52 190 aa11□□□□□ -0.65
LDB3-209ENST00000623056 LINC01559Q495D7 138 aa11□□□□□ -0.65
LDB3-209ENST00000623056 TMEM160Q9NX00 188 aa11□□□□□ -0.65
LDB3-209ENST00000623056 KAAG1Q9UBP8 84 aa11□□□□□ -0.65
LDB3-209ENST00000623056 PTPRZ1P23471 2315 aaPredicted RBP10.99□□□□□ -0.65
LDB3-209ENST00000623056 ZZEF1O43149 2961 aa10.99□□□□□ -0.65
LDB3-209ENST00000623056 KALRNO60229 2985 aa10.99□□□□□ -0.65
LDB3-209ENST00000623056 TRAV40A0A0B4J280 105 aa10.99□□□□□ -0.65
LDB3-209ENST00000623056 ORM1P02763 201 aa10.99□□□□□ -0.65
LDB3-209ENST00000623056 AMTNQ6UX39 209 aa10.99□□□□□ -0.65
LDB3-209ENST00000623056 S100A7AQ86SG5 101 aa10.99□□□□□ -0.65
LDB3-209ENST00000623056 PSMG3-AS1Q96PY0 264 aa10.99□□□□□ -0.65
LDB3-209ENST00000623056 CNFNQ9BYD5 112 aa10.99□□□□□ -0.65
LDB3-209ENST00000623056 GFRALQ6UXV0 394 aa10.98□□□□□ -0.65
LDB3-209ENST00000623056 CLUHP3Q96NS8 147 aa10.98□□□□□ -0.65
LDB3-209ENST00000623056 RAB1BQ9H0U4 201 aa10.98□□□□□ -0.65
LDB3-209ENST00000623056 MRPL35Q9NZE8 188 aaKnown RBP10.98□□□□□ -0.65
LDB3-209ENST00000623056 COX7A1P24310 79 aa10.98□□□□□ -0.65
LDB3-209ENST00000623056 TAL2Q16559 108 aa10.98□□□□□ -0.65
LDB3-209ENST00000623056 IGFL4Q6B9Z1 124 aa10.98□□□□□ -0.65
LDB3-209ENST00000623056 MTURNQ8N3F0 131 aa10.98□□□□□ -0.65
LDB3-209ENST00000623056 RPEQ96AT9 228 aa10.98□□□□□ -0.65
LDB3-209ENST00000623056 AGRNO00468 2067 aa10.97□□□□□ -0.65
LDB3-209ENST00000623056 SRSF2Q01130 221 aaKnown RBP10.97□□□□□ -0.65
LDB3-209ENST00000623056 IGF2-ASQ6U949 168 aa10.97□□□□□ -0.65
LDB3-209ENST00000623056 Q8N8P6 123 aa10.97□□□□□ -0.65
LDB3-209ENST00000623056 PRO0461Q9UI25 63 aa10.97□□□□□ -0.65
LDB3-209ENST00000623056 IGLV2-18A0A075B6J9 118 aa10.97□□□□□ -0.65
LDB3-209ENST00000623056 BSPH1Q075Z2 132 aa10.97□□□□□ -0.65
LDB3-209ENST00000623056 GAGE13Q4V321 117 aa10.97□□□□□ -0.65
LDB3-209ENST00000623056 ZNF502Q8TBZ5 544 aa10.97□□□□□ -0.65
LDB3-209ENST00000623056 PRRG2O14669 202 aa10.96□□□□□ -0.65
LDB3-209ENST00000623056 HLA-DMBP28068 263 aa10.96□□□□□ -0.65
LDB3-209ENST00000623056 INSL3P51460 131 aa10.96□□□□□ -0.65
LDB3-209ENST00000623056 RRN3P1Q2M238 152 aa10.96□□□□□ -0.65
LDB3-209ENST00000623056 TTC9CQ8N5M4 171 aa10.96□□□□□ -0.65
LDB3-209ENST00000623056 HIST1H4GQ99525 98 aa10.96□□□□□ -0.65
LDB3-209ENST00000623056 IGHG4P01861 327 aa10.96□□□□□ -0.66
LDB3-209ENST00000623056 RPL7P18124 248 aaKnown RBP10.96□□□□□ -0.66
LDB3-209ENST00000623056 PPIFP30405 207 aaKnown RBP10.96□□□□□ -0.66
LDB3-209ENST00000623056 DTX2Q86UW9 622 aa10.96□□□□□ -0.66
LDB3-209ENST00000623056 RNF5Q99942 180 aa10.96□□□□□ -0.66
LDB3-209ENST00000623056 DMXL2Q8TDJ6 3036 aa10.96□□□□□ -0.66
LDB3-209ENST00000623056 ZGRF1Q86YA3 2104 aa10.95□□□□□ -0.66
LDB3-209ENST00000623056 RAB9AP51151 201 aa10.95□□□□□ -0.66
LDB3-209ENST00000623056 FABP5P3A8MUU1 101 aa10.95□□□□□ -0.66
LDB3-209ENST00000623056 F8W735 103 aaPredicted RBP10.95□□□□□ -0.66
LDB3-209ENST00000623056 RALYQ9UKM9 306 aaKnown RBP10.95□□□□□ -0.66
LDB3-209ENST00000623056 SMAD5-AS1Q9Y6J3 95 aa10.95□□□□□ -0.66
LDB3-209ENST00000623056 SPTBN4Q9H254 2564 aa10.95□□□□□ -0.66
LDB3-209ENST00000623056 MFAP4P55083 255 aa10.94□□□□□ -0.66
LDB3-209ENST00000623056 CKS1BP61024 79 aa10.94□□□□□ -0.66
LDB3-209ENST00000623056 ATP5G2Q06055 141 aa10.94□□□□□ -0.66
LDB3-209ENST00000623056 MYOZ3Q8TDC0 251 aa10.94□□□□□ -0.66
LDB3-209ENST00000623056 RNASE6Q93091 150 aaKnown RBP10.94□□□□□ -0.66
LDB3-209ENST00000623056 ATMQ13315 3056 aa10.94□□□□□ -0.66
LDB3-209ENST00000623056 TRBV7-3A0A075B6L6 115 aa10.93□□□□□ -0.66
LDB3-209ENST00000623056 A0A087WX48 190 aa10.93□□□□□ -0.66
LDB3-209ENST00000623056 TIMM23O14925 209 aa10.93□□□□□ -0.66
LDB3-209ENST00000623056 LY6LH3BQJ8 138 aa10.93□□□□□ -0.66
LDB3-209ENST00000623056 NDUFA3O95167 84 aa10.93□□□□□ -0.66
LDB3-209ENST00000623056 ERCC8Q13216 396 aa10.93□□□□□ -0.66
LDB3-209ENST00000623056 LAGE3Q14657 143 aa10.93□□□□□ -0.66
LDB3-209ENST00000623056 SVIPQ8NHG7 77 aa10.93□□□□□ -0.66
LDB3-209ENST00000623056 FANCD2OSQ96PS1 177 aa10.93□□□□□ -0.66
LDB3-209ENST00000623056 DYNLRB1Q9NP97 96 aa10.93□□□□□ -0.66
LDB3-209ENST00000623056 IGLV11-55A0A075B6I3 123 aa10.92□□□□□ -0.66
LDB3-209ENST00000623056 A0A1B0GWB2 263 aa10.92□□□□□ -0.66
LDB3-209ENST00000623056 NCBP2LA6PVI3 153 aaKnown RBP10.92□□□□□ -0.66
LDB3-209ENST00000623056 TRGV3P03979 118 aa10.92□□□□□ -0.66
LDB3-209ENST00000623056 TCTEX1D4Q5JR98 221 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms