RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 ANAPC13Q9BS18 74 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 MAP1LC3CQ9BXW4 147 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 MRPL32Q9BYC8 188 aaKnown RBP1.89□□□□□ -2.11
VPS13C-208ENST00000559119 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.89□□□□□ -2.11
VPS13C-208ENST00000559119 CLCF1Q9UBD9 225 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 LSM7Q9UK45 103 aaKnown RBP1.89□□□□□ -2.11
VPS13C-208ENST00000559119 HLA-DRB4X5D2U9 266 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 PLXND1Q9Y4D7 1925 aa1.89□□□□□ -2.11
VPS13C-208ENST00000559119 CHD3Q12873 2000 aaKnown RBP1.88□□□□□ -2.11
VPS13C-208ENST00000559119 PAPPA2Q9BXP8 1791 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 IGHV3OR16-13A0A075B7E8 117 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 IGHV1OR21-1A0A087WYE8 117 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 IGHV1-24A0A0C4DH33 117 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 KBTBD11-OT1A0A1B0GTJ5 212 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 TEX50A0A1B0GTY4 177 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 A0A1B0GXF2 115 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 FABP5P3A8MUU1 101 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 IGLL5B9A064 214 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 LINC01619G3V211 115 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 PDCD6O75340 191 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 FCN3O75636 299 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 DHRS3O75911 302 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 APOA2P02652 100 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 CT62P0C5K7 136 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 GABRG2P18507 467 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 NTF3P20783 257 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 CD70P32970 193 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 ASIPP42127 132 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 ATP5G3P48201 142 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 FBXW4P57775 412 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 TAS2R45P59539 299 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 FXYD4P59646 89 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 RPS28P62857 69 aaKnown RBP1.88□□□□□ -2.11
VPS13C-208ENST00000559119 GNG3P63215 75 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 SLC35B1P78383 322 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 FAM53BQ14153 422 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 MRPL23Q16540 153 aaKnown RBP1.88□□□□□ -2.11
VPS13C-208ENST00000559119 CEACAM16Q2WEN9 425 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 LGALS9BQ3B8N2 356 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 NSUN5P1Q3KNT7 163 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 CLLU1OSQ5K130 101 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 TMEM215Q68D42 235 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 Q6AWC8 147 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 LGALS9CQ6DKI2 356 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 ZNF818PQ6ZRF7 136 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 Q6ZUT4 128 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 VN1R4Q7Z5H5 301 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 OOSP2Q86WS3 158 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 SBSPONQ8IVN8 264 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 CA13Q8N1Q1 262 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 GAPTQ8N292 157 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 SMIM20Q8N5G0 67 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 C2orf73Q8N5S3 287 aaPredicted RBP1.88□□□□□ -2.11
VPS13C-208ENST00000559119 TEX29Q8N6K0 151 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 GATD1Q8NB37 220 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.88□□□□□ -2.11
VPS13C-208ENST00000559119 VN1R2Q8NFZ6 395 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 RERGQ96A58 199 aaPredicted RBP1.88□□□□□ -2.11
VPS13C-208ENST00000559119 RPEQ96AT9 228 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 CLDN23Q96B33 292 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 DNAJC30Q96LL9 226 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 LINC01600Q96MT4 127 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 OXGR1Q96P68 337 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 TIMM29Q9BSF4 260 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 NPCDR1Q9BY65 106 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 IDI2-AS1Q9NZ38 188 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 MTCH1Q9NZJ7 389 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 VPREB3Q9UKI3 123 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 SIGLEC9Q9Y336 463 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 HEBP2Q9Y5Z4 205 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 HEATR5AQ86XA9 2040 aa1.88□□□□□ -2.11
VPS13C-208ENST00000559119 CABIN1Q9Y6J0 2220 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 COL4A6Q14031 1691 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 TMED7-TICAM2A0A0A6YYA0 188 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 UBE2L5PA0A1B0GUS4 154 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 A0A1B0GX51 115 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 A0A1W2PRE2 83 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 SMIM9A6NGZ8 99 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 FNDC10F2Z333 226 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 UTS2O95399 124 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 CNIH1O95406 144 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 IGKV1-39P01597 117 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 IGKV1-5P01602 117 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 IGLV2-8P01709 118 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 MT-ATP8P03928 68 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 IGKV1D-39P04432 117 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 RBMY1CP0DJD4 496 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 IFITM1P13164 125 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 GCHFRP30047 84 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 G6PCP35575 357 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 MPV17P39210 176 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 VDAC2P45880 294 aaPredicted RBP1.87□□□□□ -2.11
VPS13C-208ENST00000559119 UQCRFS1P47985 274 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 CXCL12P48061 93 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 ATP5J2P56134 94 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 RPL31P62899 125 aaKnown RBP1.87□□□□□ -2.11
VPS13C-208ENST00000559119 ATP5G2Q06055 141 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 WFDC2Q14508 124 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 GUSBP1Q15486 140 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 ZNF77Q15935 545 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 132.9 ms